mRNA_L-digitata_M_contig101781.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101781.2.1
Unique NamemRNA_L-digitata_M_contig101781.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101781.2.1 vs. uniprot
Match: A0A059E8P3_9PROT (Ribosome-binding ATPase YchF n=10 Tax=root TaxID=1 RepID=A0A059E8P3_9PROT)

HSP 1 Score: 174 bits (440), Expect = 1.460e-51
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 
Query:    1 MGFKCGIVGLPNVGKSTLFNALTQTATAQAANYPFCTIEPNVGEVAVPEPRLEKLAEVGGSKEIIPARMNFVDIAGLVEGASQGEGL 261
            MGFKCGIVGLPNVGKSTLFNALTQTATAQAANYPFCTIEPNVGEVAVPEPRLEKLAEVGGSKEIIPARMNFVDIAGLVEGASQGEGL
Sbjct:    1 MGFKCGIVGLPNVGKSTLFNALTQTATAQAANYPFCTIEPNVGEVAVPEPRLEKLAEVGGSKEIIPARMNFVDIAGLVEGASQGEGL 87
[Close]
BLAST of mRNA_L-digitata_M_contig101781.2.1 vs. uniprot
Match: A0A259M0V0_9PROT (Ribosome-binding ATPase YchF n=7 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A259M0V0_9PROT)

HSP 1 Score: 166 bits (420), Expect = 1.440e-48
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 1 
Query:    1 MGFKCGIVGLPNVGKSTLFNALTQTATAQAANYPFCTIEPNVGEVAVPEPRLEKLAEVGGSKEIIPARMNFVDIAGLVEGASQGEGL 261
            MGFKCGIVGLPNVGKSTLFNALTQTA AQAANYPFCTIEPNVGEVAVPEPRL KLA+V GSKEIIPARMNFVDIAGLVEGASQGEGL
Sbjct:    1 MGFKCGIVGLPNVGKSTLFNALTQTAAAQAANYPFCTIEPNVGEVAVPEPRLTKLAQVAGSKEIIPARMNFVDIAGLVEGASQGEGL 87
[Close]
BLAST of mRNA_L-digitata_M_contig101781.2.1 vs. uniprot
Match: UPI00036B6E34 (redox-regulated ATPase YchF n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI00036B6E34)

HSP 1 Score: 164 bits (416), Expect = 5.850e-48
Identity = 83/87 (95.40%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:    1 MGFKCGIVGLPNVGKSTLFNALTQTATAQAANYPFCTIEPNVGEVAVPEPRLEKLAEVGGSKEIIPARMNFVDIAGLVEGASQGEGL 261
            MGFKCGIVGLPNVGKSTLFNALTQTA AQAANYPFCTIEPNVGEVAVPEPRL KLAEV GSKEIIPARMNFVDIAGLV GASQGEGL
Sbjct:    1 MGFKCGIVGLPNVGKSTLFNALTQTANAQAANYPFCTIEPNVGEVAVPEPRLFKLAEVAGSKEIIPARMNFVDIAGLVRGASQGEGL 87
[Close]
BLAST of mRNA_L-digitata_M_contig101781.2.1 vs. uniprot
Match: Q0ARN9_MARMM (Ribosome-binding ATPase YchF n=8 Tax=Maricaulaceae TaxID=2800061 RepID=Q0ARN9_MARMM)

HSP 1 Score: 163 bits (413), Expect = 1.600e-47
Identity = 80/87 (91.95%), Postives = 84/87 (96.55%), Query Frame = 1 
Query:    1 MGFKCGIVGLPNVGKSTLFNALTQTATAQAANYPFCTIEPNVGEVAVPEPRLEKLAEVGGSKEIIPARMNFVDIAGLVEGASQGEGL 261
            MGFKCGIVGLPNVGKSTLFNALTQTA AQAANYPFCTIEPNVG+VAVPEPRL KLAE+ GSKEI+PARMNFVDIAGLVEGAS+GEGL
Sbjct:    1 MGFKCGIVGLPNVGKSTLFNALTQTAAAQAANYPFCTIEPNVGDVAVPEPRLAKLAEIAGSKEILPARMNFVDIAGLVEGASKGEGL 87
[Close]
BLAST of mRNA_L-digitata_M_contig101781.2.1 vs. uniprot
Match: A0A069E2B6_9PROT (Ribosome-binding ATPase YchF n=7 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A069E2B6_9PROT)

HSP 1 Score: 163 bits (413), Expect = 1.600e-47
Identity = 82/87 (94.25%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:    1 MGFKCGIVGLPNVGKSTLFNALTQTATAQAANYPFCTIEPNVGEVAVPEPRLEKLAEVGGSKEIIPARMNFVDIAGLVEGASQGEGL 261
            MGFKCGIVGLPNVGKSTLFNALTQTA AQAANYPFCTIEPNVGEVAVPEPRL  LA+V GSKEIIPARMNFVDIAGLVEGASQGEGL
Sbjct:    1 MGFKCGIVGLPNVGKSTLFNALTQTAAAQAANYPFCTIEPNVGEVAVPEPRLADLAKVAGSKEIIPARMNFVDIAGLVEGASQGEGL 87
[Close]
BLAST of mRNA_L-digitata_M_contig101781.2.1 vs. uniprot
Match: A0A8J6IJ51_9PROT (Ribosome-binding ATPase YchF n=2 Tax=Euryhalocaulis TaxID=1712422 RepID=A0A8J6IJ51_9PROT)

HSP 1 Score: 163 bits (412), Expect = 2.260e-47
Identity = 81/87 (93.10%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:    1 MGFKCGIVGLPNVGKSTLFNALTQTATAQAANYPFCTIEPNVGEVAVPEPRLEKLAEVGGSKEIIPARMNFVDIAGLVEGASQGEGL 261
            MGFKCGIVGLPNVGKSTLFNALTQTA AQAANYPFCTIEPNVGEVAVPEPRL KLAE+ GSKEIIPARMNFVDIAGLV GAS+GEGL
Sbjct:    1 MGFKCGIVGLPNVGKSTLFNALTQTAAAQAANYPFCTIEPNVGEVAVPEPRLMKLAEIAGSKEIIPARMNFVDIAGLVRGASKGEGL 87
[Close]
BLAST of mRNA_L-digitata_M_contig101781.2.1 vs. uniprot
Match: A0A399R5V3_9PROT (Ribosome-binding ATPase YchF n=10 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A399R5V3_9PROT)

HSP 1 Score: 162 bits (410), Expect = 4.500e-47
Identity = 80/87 (91.95%), Postives = 84/87 (96.55%), Query Frame = 1 
Query:    1 MGFKCGIVGLPNVGKSTLFNALTQTATAQAANYPFCTIEPNVGEVAVPEPRLEKLAEVGGSKEIIPARMNFVDIAGLVEGASQGEGL 261
            MGFKCGIVGLPNVGKSTLFNALTQTA AQAANYPFCTIEPNVGEVAVPEPRL +LA++ GSKEIIPARMNFVDIAGLVEGAS+GEGL
Sbjct:    1 MGFKCGIVGLPNVGKSTLFNALTQTAAAQAANYPFCTIEPNVGEVAVPEPRLAELAKIAGSKEIIPARMNFVDIAGLVEGASKGEGL 87
[Close]
BLAST of mRNA_L-digitata_M_contig101781.2.1 vs. uniprot
Match: A0A059G8K6_9PROT (Ribosome-binding ATPase YchF n=4 Tax=Hyphomonas TaxID=85 RepID=A0A059G8K6_9PROT)

HSP 1 Score: 162 bits (410), Expect = 4.500e-47
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:    1 MGFKCGIVGLPNVGKSTLFNALTQTATAQAANYPFCTIEPNVGEVAVPEPRLEKLAEVGGSKEIIPARMNFVDIAGLVEGASQGEGL 261
            MGFKCGIVGLPNVGKSTLFNALTQTA AQAANYPFCTIEPNVGEVAVPEPRL +LA + GSKEIIPARMNFVDIAGLVEGAS+GEGL
Sbjct:    1 MGFKCGIVGLPNVGKSTLFNALTQTAAAQAANYPFCTIEPNVGEVAVPEPRLNELARIAGSKEIIPARMNFVDIAGLVEGASKGEGL 87
[Close]
BLAST of mRNA_L-digitata_M_contig101781.2.1 vs. uniprot
Match: A0A2G2GKA5_9PROT (Ribosome-binding ATPase YchF n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GKA5_9PROT)

HSP 1 Score: 162 bits (409), Expect = 6.350e-47
Identity = 80/87 (91.95%), Postives = 84/87 (96.55%), Query Frame = 1 
Query:    1 MGFKCGIVGLPNVGKSTLFNALTQTATAQAANYPFCTIEPNVGEVAVPEPRLEKLAEVGGSKEIIPARMNFVDIAGLVEGASQGEGL 261
            MGFKCGIVGLPNVGKSTLFNALTQTA AQAANYPFCTIEPNVGEVAVPEPRL KLA++ GSKEIIPA+MNFVDIAGLVEGAS+GEGL
Sbjct:    1 MGFKCGIVGLPNVGKSTLFNALTQTANAQAANYPFCTIEPNVGEVAVPEPRLFKLAKIAGSKEIIPAKMNFVDIAGLVEGASKGEGL 87
[Close]
BLAST of mRNA_L-digitata_M_contig101781.2.1 vs. uniprot
Match: A0A3B0RUS9_9ZZZZ (GTP-binding and nucleic acid-binding protein YchF n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0RUS9_9ZZZZ)

HSP 1 Score: 162 bits (409), Expect = 6.350e-47
Identity = 80/87 (91.95%), Postives = 84/87 (96.55%), Query Frame = 1 
Query:    1 MGFKCGIVGLPNVGKSTLFNALTQTATAQAANYPFCTIEPNVGEVAVPEPRLEKLAEVGGSKEIIPARMNFVDIAGLVEGASQGEGL 261
            MGFKCGIVGLPNVGKSTLFNALTQTA AQAANYPFCTIEPNVGEVAVPEPRL KLA++ GSKEIIPA+MNFVDIAGLVEGAS+GEGL
Sbjct:    1 MGFKCGIVGLPNVGKSTLFNALTQTANAQAANYPFCTIEPNVGEVAVPEPRLFKLAKIAGSKEIIPAKMNFVDIAGLVEGASKGEGL 87
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101781.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A059E8P3_9PROT1.460e-51100.00Ribosome-binding ATPase YchF n=10 Tax=root TaxID=1... [more]
A0A259M0V0_9PROT1.440e-4895.40Ribosome-binding ATPase YchF n=7 Tax=Alphaproteoba... [more]
UPI00036B6E345.850e-4895.40redox-regulated ATPase YchF n=1 Tax=Robiginitomacu... [more]
Q0ARN9_MARMM1.600e-4791.95Ribosome-binding ATPase YchF n=8 Tax=Maricaulaceae... [more]
A0A069E2B6_9PROT1.600e-4794.25Ribosome-binding ATPase YchF n=7 Tax=Hyphomonadace... [more]
A0A8J6IJ51_9PROT2.260e-4793.10Ribosome-binding ATPase YchF n=2 Tax=Euryhalocauli... [more]
A0A399R5V3_9PROT4.500e-4791.95Ribosome-binding ATPase YchF n=10 Tax=Hyphomonadac... [more]
A0A059G8K6_9PROT4.500e-4791.95Ribosome-binding ATPase YchF n=4 Tax=Hyphomonas Ta... [more]
A0A2G2GKA5_9PROT6.350e-4791.95Ribosome-binding ATPase YchF n=1 Tax=Robiginitomac... [more]
A0A3B0RUS9_9ZZZZ6.350e-4791.95GTP-binding and nucleic acid-binding protein YchF ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101781contigL-digitata_M_contig101781:662..922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1207058.L53_05040
Preferred nameychF
PFAMsMMR_HSR1,YchF-GTPase_C
Model size261
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K06942
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0044424,GO:0044464
Exons1
Evalue2.4e-52
EggNOG OGsCOG0012@1|root,COG0012@2|Bacteria,1MVM4@1224|Proteobacteria,2TRAD@28211|Alphaproteobacteria,43WK2@69657|Hyphomonadaceae
DescriptionATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner
Cds size261
COG categoryJ
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406622.5947518-CDS-L-digitata_M_contig101781:661..9221682406622.5947518-CDS-L-digitata_M_contig101781:661..922Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101781 662..922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101781.2.1prot_L-digitata_M_contig101781.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101781 662..922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101781.2.1

>prot_L-digitata_M_contig101781.2.1 ID=prot_L-digitata_M_contig101781.2.1|Name=mRNA_L-digitata_M_contig101781.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=87bp
MGFKCGIVGLPNVGKSTLFNALTQTATAQAANYPFCTIEPNVGEVAVPEP
RLEKLAEVGGSKEIIPARMNFVDIAGLVEGASQGEGL
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mRNA from alignment at L-digitata_M_contig101781:662..922+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101781.2.1 ID=mRNA_L-digitata_M_contig101781.2.1|Name=mRNA_L-digitata_M_contig101781.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=261bp|location=Sequence derived from alignment at L-digitata_M_contig101781:662..922+ (Laminaria digitata LdigPH10_18mv male)
ATGGGCTTCAAATGCGGCATCGTAGGCCTTCCCAATGTGGGCAAGTCCAC
ACTCTTCAATGCGCTCACTCAGACGGCCACAGCGCAAGCGGCCAACTATC
CATTCTGCACGATTGAGCCAAATGTTGGCGAAGTCGCCGTACCAGAGCCC
AGGCTGGAGAAGCTCGCCGAAGTCGGTGGCTCGAAGGAGATCATCCCGGC
GCGCATGAACTTCGTGGACATTGCGGGTCTCGTAGAGGGCGCCTCCCAAG
GTGAAGGCCTT
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Coding sequence (CDS) from alignment at L-digitata_M_contig101781:662..922+

>mRNA_L-digitata_M_contig101781.2.1 ID=mRNA_L-digitata_M_contig101781.2.1|Name=mRNA_L-digitata_M_contig101781.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=261bp|location=Sequence derived from alignment at L-digitata_M_contig101781:662..922+ (Laminaria digitata LdigPH10_18mv male)
ATGGGCTTCAAATGCGGCATCGTAGGCCTTCCCAATGTGGGCAAGTCCAC
ACTCTTCAATGCGCTCACTCAGACGGCCACAGCGCAAGCGGCCAACTATC
CATTCTGCACGATTGAGCCAAATGTTGGCGAAGTCGCCGTACCAGAGCCC
AGGCTGGAGAAGCTCGCCGAAGTCGGTGGCTCGAAGGAGATCATCCCGGC
GCGCATGAACTTCGTGGACATTGCGGGTCTCGTAGAGGGCGCCTCCCAAG
GTGAAGGCCTT
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