mRNA_L-digitata_M_contig101781.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-digitata_M_contig101781.1.1
Unique Name	mRNA_L-digitata_M_contig101781.1.1
Type	mRNA
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))

Homology

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BLAST of mRNA_L-digitata_M_contig101781.1.1 vs. uniprot
Match: A0A2E3AW57_9PROT (TIR domain-containing protein n=5 Tax=root TaxID=1 RepID=A0A2E3AW57_9PROT)

HSP 1 Score: 330 bits (847), Expect = 1.740e-112
Identity = 162/175 (92.57%), Postives = 170/175 (97.14%), Query Frame = 1

Query:    1 MAYDVFLVSAIEDRDIAKLVARRLRSLKFKVWFDQKQVDNTFDAKDARNAGNSKHMLVMWSEHAVKSDWVRAAASVGHSRPGMLAQVSVDKTIPYEPFKSDKRFSIEGMTSRKTPEGFYKLIEELGQRDGRSDLREWMGYGSKDEEAREDWLTAHSDEPLAIDAKKKREKAMGIK 525
            MAYDVFLVSAIEDRD+AKLVARRLRSLKFKVWFDQKQ DNTFDAKDARNAGNS+HMLVMWSEHAVKSDWVRAAASVGHSRPGMLAQVS+DKTIPYEPFKSDK FSIEGMTSRKTPEGFYK+IEEL QRDGRSDLREWMG+GSKDEEAREDWL AH ++PLAIDA+KKREKAMGIK
Sbjct:    1 MAYDVFLVSAIEDRDMAKLVARRLRSLKFKVWFDQKQTDNTFDAKDARNAGNSRHMLVMWSEHAVKSDWVRAAASVGHSRPGMLAQVSLDKTIPYEPFKSDKWFSIEGMTSRKTPEGFYKMIEELAQRDGRSDLREWMGFGSKDEEAREDWLAAHPEDPLAIDARKKREKAMGIK 175

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BLAST of mRNA_L-digitata_M_contig101781.1.1 vs. uniprot
Match: A0A2E3AVU5_9PROT (TIR domain-containing protein n=1 Tax=Hyphomonadaceae bacterium TaxID=2026748 RepID=A0A2E3AVU5_9PROT)

HSP 1 Score: 323 bits (828), Expect = 1.350e-109
Identity = 159/175 (90.86%), Postives = 167/175 (95.43%), Query Frame = 1

Query:    1 MAYDVFLVSAIEDRDIAKLVARRLRSLKFKVWFDQKQVDNTFDAKDARNAGNSKHMLVMWSEHAVKSDWVRAAASVGHSRPGMLAQVSVDKTIPYEPFKSDKRFSIEGMTSRKTPEGFYKLIEELGQRDGRSDLREWMGYGSKDEEAREDWLTAHSDEPLAIDAKKKREKAMGIK 525
            MAYDVFLVSAIEDRD+AKLVARRLRSLKFKVWFDQKQ DNTFDAKDARNAGNS+HMLVMWSEHAVKS WVRAAAS GHSR GMLAQVS+DKTIPYEPFKSDKR SIEGMTSRKTPEGFYK+IEEL QRDGRSDLREWMG+GSKDEEAREDWL AH ++PLAIDA+KKREKAMGIK
Sbjct:    1 MAYDVFLVSAIEDRDMAKLVARRLRSLKFKVWFDQKQTDNTFDAKDARNAGNSRHMLVMWSEHAVKSXWVRAAASXGHSRXGMLAQVSLDKTIPYEPFKSDKRXSIEGMTSRKTPEGFYKMIEELAQRDGRSDLREWMGFGSKDEEAREDWLAAHPEDPLAIDARKKREKAMGIK 175

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BLAST of mRNA_L-digitata_M_contig101781.1.1 vs. uniprot
Match: A0A059E4P9_9PROT (TIR domain-containing protein n=3 Tax=Hyphomonas TaxID=85 RepID=A0A059E4P9_9PROT)

HSP 1 Score: 317 bits (813), Expect = 2.490e-107
Identity = 155/175 (88.57%), Postives = 165/175 (94.29%), Query Frame = 1

Query:    1 MAYDVFLVSAIEDRDIAKLVARRLRSLKFKVWFDQKQVDNTFDAKDARNAGNSKHMLVMWSEHAVKSDWVRAAASVGHSRPGMLAQVSVDKTIPYEPFKSDKRFSIEGMTSRKTPEGFYKLIEELGQRDGRSDLREWMGYGSKDEEAREDWLTAHSDEPLAIDAKKKREKAMGIK 525
            MAYDVFLVSAIEDRD+AKLVARRLRSLKFKVWFDQKQ DNTFDAKDARNAGNS++MLVMWS+ AVKSDWVRAAASVGHSRPGML Q S+DKTIPYEPFKSDKRFSIEGMTSRKTPEGFYK+IEELGQR GRSDLREWMGYG KDE+AR DW+ AH D+P+AID KKKREKAMGIK
Sbjct:    1 MAYDVFLVSAIEDRDMAKLVARRLRSLKFKVWFDQKQTDNTFDAKDARNAGNSEYMLVMWSKDAVKSDWVRAAASVGHSRPGMLVQTSLDKTIPYEPFKSDKRFSIEGMTSRKTPEGFYKMIEELGQRAGRSDLREWMGYGKKDEDARADWIAAHPDDPIAIDDKKKREKAMGIK 175

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BLAST of mRNA_L-digitata_M_contig101781.1.1 vs. uniprot
Match: A0A062TWI5_9PROT (TIR domain-containing protein n=3 Tax=Hyphomonas TaxID=85 RepID=A0A062TWI5_9PROT)

HSP 1 Score: 301 bits (772), Expect = 6.350e-101
Identity = 148/175 (84.57%), Postives = 162/175 (92.57%), Query Frame = 1

Query:    1 MAYDVFLVSAIEDRDIAKLVARRLRSLKFKVWFDQKQVDNTFDAKDARNAGNSKHMLVMWSEHAVKSDWVRAAASVGHSRPGMLAQVSVDKTIPYEPFKSDKRFSIEGMTSRKTPEGFYKLIEELGQRDGRSDLREWMGYGSKDEEAREDWLTAHSDEPLAIDAKKKREKAMGIK 525
            MAYDVFLVSAIEDRD+AKLVARRLRSLKFKVWFDQKQ DNTFDAKDARNAGNS+ MLV+WSE+AVKSDWVRAAASVGHSRPGMLAQ S+DKTIPY+PFK DKR+S+EGMTSRKTPEGFY+LIEELG+R  RS LREWMG GSKDEE R+ WL AH ++PLAID KKKREKA+GIK
Sbjct:    1 MAYDVFLVSAIEDRDMAKLVARRLRSLKFKVWFDQKQTDNTFDAKDARNAGNSESMLVIWSENAVKSDWVRAAASVGHSRPGMLAQASLDKTIPYQPFKQDKRYSLEGMTSRKTPEGFYQLIEELGKRQNRSGLREWMGLGSKDEEERDAWLEAHPEDPLAIDDKKKREKALGIK 175

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BLAST of mRNA_L-digitata_M_contig101781.1.1 vs. uniprot
Match: A0A059G997_9PROT (TIR domain-containing protein n=2 Tax=Hyphomonas TaxID=85 RepID=A0A059G997_9PROT)

HSP 1 Score: 280 bits (716), Expect = 1.670e-92
Identity = 135/175 (77.14%), Postives = 155/175 (88.57%), Query Frame = 1

Query:    1 MAYDVFLVSAIEDRDIAKLVARRLRSLKFKVWFDQKQVDNTFDAKDARNAGNSKHMLVMWSEHAVKSDWVRAAASVGHSRPGMLAQVSVDKTIPYEPFKSDKRFSIEGMTSRKTPEGFYKLIEELGQRDGRSDLREWMGYGSKDEEAREDWLTAHSDEPLAIDAKKKREKAMGIK 525
            MAYDVFLVSA EDRD AKL+ARRLR+LKFKVWFDQKQVD TFDAKDARNA NS  MLV+WSE+AVKSDWVRAAASVGHSRPG L Q+++DKTIPYEPF+++KRFSI  MTSRKTPEGFY+ ++ELG RDGR+DLREWMGYGSKDE+ R DWL AH ++PLA+ AK +REK +G K
Sbjct:    1 MAYDVFLVSANEDRDTAKLIARRLRALKFKVWFDQKQVDETFDAKDARNAMNSTSMLVLWSENAVKSDWVRAAASVGHSRPGTLVQMALDKTIPYEPFRTNKRFSIASMTSRKTPEGFYQAVDELGSRDGRTDLREWMGYGSKDEDERADWLAAHPEDPLALHAKAQREKELGKK 175

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BLAST of mRNA_L-digitata_M_contig101781.1.1 vs. uniprot
Match: A0A059FS81_9PROT (TIR domain-containing protein n=1 Tax=Hyphomonas johnsonii MHS-2 TaxID=1280950 RepID=A0A059FS81_9PROT)

HSP 1 Score: 276 bits (705), Expect = 8.090e-91
Identity = 136/175 (77.71%), Postives = 151/175 (86.29%), Query Frame = 1

Query:    1 MAYDVFLVSAIEDRDIAKLVARRLRSLKFKVWFDQKQVDNTFDAKDARNAGNSKHMLVMWSEHAVKSDWVRAAASVGHSRPGMLAQVSVDKTIPYEPFKSDKRFSIEGMTSRKTPEGFYKLIEELGQRDGRSDLREWMGYGSKDEEAREDWLTAHSDEPLAIDAKKKREKAMGIK 525
            MAYDVFLVSAIEDRD+AKLVARRLR+LKFKVWFDQKQ + TFDAKDARNA NS  MLV+WSEHAVKSDWVRAAASVGHSRPG L QV +DKTIPYEPF++ KR SI GMTSRKTPEGFYK I+ L +  GR+DLREWMGYGSKDE+ R DWL AH D+PLA+ AK +REK +G K
Sbjct:    1 MAYDVFLVSAIEDRDLAKLVARRLRALKFKVWFDQKQENETFDAKDARNATNSDMMLVLWSEHAVKSDWVRAAASVGHSRPGTLVQVGLDKTIPYEPFRTQKRHSIVGMTSRKTPEGFYKAIDALAELAGRTDLREWMGYGSKDEDERADWLAAHPDDPLALHAKAQREKDLGKK 175

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BLAST of mRNA_L-digitata_M_contig101781.1.1 vs. uniprot
Match: A0A0F2RCP7_9PROT (TIR domain-containing protein n=1 Tax=Hyphomonas sp. BRH_c22 TaxID=1629710 RepID=A0A0F2RCP7_9PROT)

HSP 1 Score: 271 bits (693), Expect = 5.540e-89
Identity = 130/175 (74.29%), Postives = 151/175 (86.29%), Query Frame = 1

Query:    1 MAYDVFLVSAIEDRDIAKLVARRLRSLKFKVWFDQKQVDNTFDAKDARNAGNSKHMLVMWSEHAVKSDWVRAAASVGHSRPGMLAQVSVDKTIPYEPFKSDKRFSIEGMTSRKTPEGFYKLIEELGQRDGRSDLREWMGYGSKDEEAREDWLTAHSDEPLAIDAKKKREKAMGIK 525
            MAYDVFLVSA EDRD AKL+ARRLR+LKFKVWF+QKQVD TFDAKDARNA NS  MLV+WSE+AVKSDWVRAAASVGHSRPG L Q+ +DKTIPYEPF++ KR S+ GMTSRKTP+GFYK +E LG  DGR+DLREWMG+G+KDE+ R DWL AH  +PLA+ AK +REK +G+K
Sbjct:    1 MAYDVFLVSASEDRDTAKLIARRLRALKFKVWFNQKQVDETFDAKDARNATNSTSMLVLWSENAVKSDWVRAAASVGHSRPGTLVQMGLDKTIPYEPFRTGKRHSVVGMTSRKTPDGFYKAVEALGANDGRTDLREWMGFGAKDEDERADWLAAHPHDPLALHAKAQREKELGMK 175

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BLAST of mRNA_L-digitata_M_contig101781.1.1 vs. uniprot
Match: A0A350ZVE0_9PROT (TIR domain-containing protein (Fragment) n=1 Tax=Hyphomonas sp. TaxID=87 RepID=A0A350ZVE0_9PROT)

HSP 1 Score: 262 bits (670), Expect = 2.010e-87
Identity = 125/170 (73.53%), Postives = 151/170 (88.82%), Query Frame = 1

Query:    1 MAYDVFLVSAIEDRDIAKLVARRLRSLKFKVWFDQKQVDNTFDAKDARNAGNSKHMLVMWSEHAVKSDWVRAAASVGHSRPGMLAQVSVDKTIPYEPFKSDKRFSIEGMTSRKTPEGFYKLIEELGQRDGRSDLREWMGYGSKDEEAREDWLTAHSDEPLAIDAKKKREK 510
            M+YD+FLVSA+EDRD AKLVARRLR+LKFKVWFDQKQVD TFDAKDAR+A NS+ MLV+WS  AVK+DWVRAAASVGHSR  +LA+V +DKTIPYEPF+  KRFS++GMTSRKTPEGF +L+EELG+R GR+DLR+WMG+ +++E+ R DWL AH  +PLA+DAKKKREK
Sbjct:    1 MSYDIFLVSAVEDRDTAKLVARRLRALKFKVWFDQKQVDETFDAKDARDAMNSQSMLVLWSAAAVKNDWVRAAASVGHSRGDVLAEVGLDKTIPYEPFRQHKRFSLDGMTSRKTPEGFVQLVEELGRRQGRTDLRQWMGFTAQEEDERLDWLAAHPQDPLALDAKKKREK 170

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BLAST of mRNA_L-digitata_M_contig101781.1.1 vs. uniprot
Match: UPI001C812BCC (hypothetical protein n=1 Tax=Hyphomonas sp. WL0036 TaxID=2866160 RepID=UPI001C812BCC)

HSP 1 Score: 267 bits (682), Expect = 2.850e-87
Identity = 126/175 (72.00%), Postives = 155/175 (88.57%), Query Frame = 1

Query:    1 MAYDVFLVSAIEDRDIAKLVARRLRSLKFKVWFDQKQVDNTFDAKDARNAGNSKHMLVMWSEHAVKSDWVRAAASVGHSRPGMLAQVSVDKTIPYEPFKSDKRFSIEGMTSRKTPEGFYKLIEELGQRDGRSDLREWMGYGSKDEEAREDWLTAHSDEPLAIDAKKKREKAMGIK 525
            M+YDVFLVS + DRDIAKLV RRLRSLKFKV F+Q Q D TFD KDAR+A NS+ +LV+WSE+AVKSDWVRAAASVG+SRPG L Q ++DKTIPYEPF+ +KR+SIEGMTSRKTPEGFY+L+EELG+R+GR++LREW+ +GSKD++ R DWL AH ++PLA+DA+KKREK +GIK
Sbjct:    1 MSYDVFLVSGVADRDIAKLVVRRLRSLKFKVAFNQNQTDETFDPKDARDATNSQSVLVLWSENAVKSDWVRAAASVGNSRPGTLVQAAIDKTIPYEPFRQEKRYSIEGMTSRKTPEGFYQLVEELGRREGRTNLREWLNFGSKDDDLRADWLAAHPNDPLAVDARKKREKDLGIK 175

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BLAST of mRNA_L-digitata_M_contig101781.1.1 vs. uniprot
Match: A0A259M233_9PROT (TIR domain-containing protein n=3 Tax=Hyphomonas TaxID=85 RepID=A0A259M233_9PROT)

HSP 1 Score: 264 bits (675), Expect = 3.730e-86
Identity = 123/175 (70.29%), Postives = 156/175 (89.14%), Query Frame = 1

Query:    1 MAYDVFLVSAIEDRDIAKLVARRLRSLKFKVWFDQKQVDNTFDAKDARNAGNSKHMLVMWSEHAVKSDWVRAAASVGHSRPGMLAQVSVDKTIPYEPFKSDKRFSIEGMTSRKTPEGFYKLIEELGQRDGRSDLREWMGYGSKDEEAREDWLTAHSDEPLAIDAKKKREKAMGIK 525
            M+YDVFLVSA+ DRDIAKLV RRLRSLKF+V F+Q Q+D TFD KDAR+A NS+ +LV+WSE+AVKSDWVRAAASVG+SRPG L Q ++DKTIPYEPF+ +KR+SI+GMTSRKTPEGFY+L++ELG+RDGR+DLR+W+ +GSKD++ R DW+ AH ++P+A DA+KKREK +GIK
Sbjct:    1 MSYDVFLVSAVADRDIAKLVVRRLRSLKFRVAFNQNQIDETFDPKDARDATNSQSVLVLWSENAVKSDWVRAAASVGNSRPGTLIQAAIDKTIPYEPFRQEKRYSIDGMTSRKTPEGFYQLVDELGRRDGRADLRQWLSFGSKDDDKRADWIAAHPNDPIAEDARKKREKDLGIK 175

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig101781.1.1 vs. uniprot

BLAST of mRNA_L-digitata_M_contig101781.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2E3AW57_9PROT	1.740e-112	92.57	TIR domain-containing protein n=5 Tax=root TaxID=1...	[more]
A0A2E3AVU5_9PROT	1.350e-109	90.86	TIR domain-containing protein n=1 Tax=Hyphomonadac...	[more]
A0A059E4P9_9PROT	2.490e-107	88.57	TIR domain-containing protein n=3 Tax=Hyphomonas T...	[more]
A0A062TWI5_9PROT	6.350e-101	84.57	TIR domain-containing protein n=3 Tax=Hyphomonas T...	[more]
A0A059G997_9PROT	1.670e-92	77.14	TIR domain-containing protein n=2 Tax=Hyphomonas T...	[more]
A0A059FS81_9PROT	8.090e-91	77.71	TIR domain-containing protein n=1 Tax=Hyphomonas j...	[more]
A0A0F2RCP7_9PROT	5.540e-89	74.29	TIR domain-containing protein n=1 Tax=Hyphomonas s...	[more]
A0A350ZVE0_9PROT	2.010e-87	73.53	TIR domain-containing protein (Fragment) n=1 Tax=H...	[more]
UPI001C812BCC	2.850e-87	72.00	hypothetical protein n=1 Tax=Hyphomonas sp. WL0036...	[more]
A0A259M233_9PROT	3.730e-86	70.29	TIR domain-containing protein n=3 Tax=Hyphomonas T...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig101781	contig	L-digitata_M_contig101781:3..527 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	1207058.L53_05035
PFAMs	TIR_2
Model size	525
Max annot lvl	28211\|Alphaproteobacteria
Hectar predicted targeting category	other localisation
Exons	1
Evalue	1.16e-119
EggNOG OGs	2BNYQ@1\|root,32HNT@2\|Bacteria,1Q80W@1224\|Proteobacteria,2V75T@28211\|Alphaproteobacteria,43ZRR@69657\|Hyphomonadaceae
Description	TIR domain
Cds size	525
COG category	S

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682406622.5651762-CDS-L-digitata_M_contig101781:2..527	1682406622.5651762-CDS-L-digitata_M_contig101781:2..527	Laminaria digitata LdigPH10_18mv male	CDS	L-digitata_M_contig101781 3..527 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig101781.1.1	prot_L-digitata_M_contig101781.1.1	Laminaria digitata LdigPH10_18mv male	polypeptide	L-digitata_M_contig101781 3..527 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-digitata_M_contig101781:3..527-
coding sequence from alignment at L-digitata_M_contig101781:3..527-

protein sequence of mRNA_L-digitata_M_contig101781.1.1

>prot_L-digitata_M_contig101781.1.1 ID=prot_L-digitata_M_contig101781.1.1|Name=mRNA_L-digitata_M_contig101781.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=175bp
MAYDVFLVSAIEDRDIAKLVARRLRSLKFKVWFDQKQVDNTFDAKDARNA
GNSKHMLVMWSEHAVKSDWVRAAASVGHSRPGMLAQVSVDKTIPYEPFKS
DKRFSIEGMTSRKTPEGFYKLIEELGQRDGRSDLREWMGYGSKDEEARED
WLTAHSDEPLAIDAKKKREKAMGIK

mRNA from alignment at L-digitata_M_contig101781:3..527-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-digitata_M_contig101781.1.1 ID=mRNA_L-digitata_M_contig101781.1.1|Name=mRNA_L-digitata_M_contig101781.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=525bp|location=Sequence derived from alignment at L-digitata_M_contig101781:3..527- (Laminaria digitata LdigPH10_18mv male)
ATGGCGTACGATGTTTTCCTGGTATCGGCGATCGAAGATCGCGACATAGC
GAAGTTGGTCGCACGTCGGCTGCGTTCGCTGAAGTTCAAGGTCTGGTTCG
ATCAAAAGCAGGTGGACAATACGTTCGATGCCAAGGATGCACGCAATGCG
GGCAATTCCAAGCATATGCTTGTCATGTGGTCCGAACATGCAGTGAAGAG
CGACTGGGTGCGTGCGGCGGCTTCTGTCGGGCATTCGCGGCCTGGCATGT
TGGCCCAGGTCAGCGTCGACAAGACGATCCCTTACGAGCCGTTCAAAAGC
GACAAACGTTTCTCGATTGAGGGCATGACGTCGCGCAAGACTCCTGAAGG
CTTTTACAAACTGATCGAAGAGCTCGGCCAGCGCGATGGGCGCTCCGACC
TTCGAGAGTGGATGGGGTATGGCTCGAAGGATGAAGAAGCGCGGGAAGAC
TGGCTCACGGCTCATTCGGACGAACCGCTTGCTATTGATGCAAAGAAGAA
GCGTGAGAAGGCGATGGGTATCAAG

Coding sequence (CDS) from alignment at L-digitata_M_contig101781:3..527-

>mRNA_L-digitata_M_contig101781.1.1 ID=mRNA_L-digitata_M_contig101781.1.1|Name=mRNA_L-digitata_M_contig101781.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=525bp|location=Sequence derived from alignment at L-digitata_M_contig101781:3..527- (Laminaria digitata LdigPH10_18mv male)
ATGGCGTACGATGTTTTCCTGGTATCGGCGATCGAAGATCGCGACATAGC
GAAGTTGGTCGCACGTCGGCTGCGTTCGCTGAAGTTCAAGGTCTGGTTCG
ATCAAAAGCAGGTGGACAATACGTTCGATGCCAAGGATGCACGCAATGCG
GGCAATTCCAAGCATATGCTTGTCATGTGGTCCGAACATGCAGTGAAGAG
CGACTGGGTGCGTGCGGCGGCTTCTGTCGGGCATTCGCGGCCTGGCATGT
TGGCCCAGGTCAGCGTCGACAAGACGATCCCTTACGAGCCGTTCAAAAGC
GACAAACGTTTCTCGATTGAGGGCATGACGTCGCGCAAGACTCCTGAAGG
CTTTTACAAACTGATCGAAGAGCTCGGCCAGCGCGATGGGCGCTCCGACC
TTCGAGAGTGGATGGGGTATGGCTCGAAGGATGAAGAAGCGCGGGAAGAC
TGGCTCACGGCTCATTCGGACGAACCGCTTGCTATTGATGCAAAGAAGAA
GCGTGAGAAGGCGATGGGTATCAAG