mRNA_L-digitata_M_contig101777.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig101777.1.1 vs. uniprot
Match: A0A2D8G2R3_9PROT (Uncharacterized protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2D8G2R3_9PROT) HSP 1 Score: 352 bits (904), Expect = 4.270e-120 Identity = 174/226 (76.99%), Postives = 201/226 (88.94%), Query Frame = 1
Query: 1 RSELPFYGMRILFAFFAMVFLFYALARMPLADVYALQYTIPLFTILLAVLFLRQKADIHSWAAVFVGFVGTLIVMRPGIIEITLAAMGAITAACLSAGSNTTIKILSRKDNAEAITLWTNIGMLPLALIPTIFVWVTPTAAQWPLIIGVGVVSSIGGYCFTRAVSAADARIMQPFQFSRMVFATAIGWIMFSEFPDLWTWIGAAVIFGASYYIVYREGLARKAARK 678
+S++P Y +R+LFA+ AMV LF+ALARMP+ADVYALQYTIPLFTILLAV L+Q ADIHSW A F+GF+GTLIVMRPGIIEITLA+M A+T A + AGSNTTIKIL+R+DN E ITLWTN GMLPLALIPT+F+WVTPT QWPL+IG G+VSSIGGYCFTR+VSAADARI+QPFQFSRM+FA AIGW MFSE PDLWTWIGAAVIF ASYY+V+REGL R+A +K
Sbjct: 65 KSQIPVYALRVLFAYSAMVLLFFALARMPIADVYALQYTIPLFTILLAVXVLKQHADIHSWGACFIGFLGTLIVMRPGIIEITLASMAALTTAFMHAGSNTTIKILARRDNPEVITLWTNFGMLPLALIPTLFLWVTPTITQWPLVIGXGIVSSIGGYCFTRSVSAADARIVQPFQFSRMIFAAAIGWXMFSELPDLWTWIGAAVIFAASYYLVFREGLTRRAEKK 290
BLAST of mRNA_L-digitata_M_contig101777.1.1 vs. uniprot
Match: A0A2S6Q8V5_9PROT (Riboflavin transporter n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6Q8V5_9PROT) HSP 1 Score: 326 bits (835), Expect = 1.230e-109 Identity = 165/225 (73.33%), Postives = 192/225 (85.33%), Query Frame = 1
Query: 1 RSELPFYGMRILFAFFAMVFLFYALARMPLADVYALQYTIPLFTILLAVLFLRQKADIHSWAAVFVGFVGTLIVMRPGIIEITLAAMGAITAACLSAGSNTTIKILSRKDNAEAITLWTNIGMLPLALIPTIFVWVTPTAAQWPLIIGVGVVSSIGGYCFTRAVSAADARIMQPFQFSRMVFATAIGWIMFSEFPDLWTWIGAAVIFGASYYIVYREGLARKAAR 675
R + Y +R+LFA+ AM LF+AL++MP+ADVYALQYT PLFT++LAVL L+QKAD HSW A VGFVGTLIVMRPGIIEITLA+ A+ A L AG+NTTIK+LS KD+ E ITLWTN+ MLPLALIP + WVTPT QWPL+IG+GVVSS+GGYCFTR+VSAADAR++QPFQFSRM+FATAIGWIMFSE PD+WTW+GA VIF ASYYIVYREGLARKA R
Sbjct: 65 RLQTRIYVLRVLFAYSAMTMLFFALSKMPIADVYALQYTTPLFTMVLAVLILKQKADRHSWIACMVGFVGTLIVMRPGIIEITLASAAALGMAFLYAGTNTTIKLLSGKDSPEVITLWTNLLMLPLALIPALVFWVTPTLEQWPLVIGIGVVSSVGGYCFTRSVSAADARVVQPFQFSRMIFATAIGWIMFSELPDIWTWVGAGVIFCASYYIVYREGLARKARR 289
BLAST of mRNA_L-digitata_M_contig101777.1.1 vs. uniprot
Match: A0A2E6P415_9GAMM (Uncharacterized protein n=1 Tax=Acidiferrobacteraceae bacterium TaxID=2024893 RepID=A0A2E6P415_9GAMM) HSP 1 Score: 310 bits (795), Expect = 1.240e-103 Identity = 152/221 (68.78%), Postives = 186/221 (84.16%), Query Frame = 1
Query: 4 SELPFYGMRILFAFFAMVFLFYALARMPLADVYALQYTIPLFTILLAVLFLRQKADIHSWAAVFVGFVGTLIVMRPGIIEITLAAMGAITAACLSAGSNTTIKILSRKDNAEAITLWTNIGMLPLALIPTIFVWVTPTAAQWPLIIGVGVVSSIGGYCFTRAVSAADARIMQPFQFSRMVFATAIGWIMFSEFPDLWTWIGAAVIFGASYYIVYREGLARK 666
++ Y +R+ A+ MV LF+ALA MP+ADVYALQYT PLFT++LAV L+Q+AD HSWAA +GF+GTLIVMRPGIIEITLA+ A+T A L AG+NTTIK+L+R+D+ E IT WTN+ MLP AL+P +F WVTPT +QWPL+IG+ +VSSIGGYCFTR+VSAA+ARI+QPFQFSRM+FATAIGWIMFSE PD+WTWIGA VIF ASYYIVYREG ++
Sbjct: 66 NQAKLYIIRVALAYTGMVMLFFALAHMPIADVYALQYTTPLFTMILAVTILKQQADKHSWAACLIGFIGTLIVMRPGIIEITLASSAALTMALLYAGTNTTIKLLARQDSPEVITXWTNMIMLPFALLPALFFWVTPTLSQWPLVIGIAIVSSIGGYCFTRSVSAAEARIVQPFQFSRMIFATAIGWIMFSELPDIWTWIGAGVIFAASYYIVYREGFGKR 286
BLAST of mRNA_L-digitata_M_contig101777.1.1 vs. uniprot
Match: A0A2E5PFD8_9PROT (EamA domain-containing protein (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5PFD8_9PROT) HSP 1 Score: 286 bits (733), Expect = 1.100e-95 Identity = 138/182 (75.82%), Postives = 161/182 (88.46%), Query Frame = 1
Query: 121 PLFTILLAVLFLRQKADIHSWAAVFVGFVGTLIVMRPGIIEITLAAMGAITAACLSAGSNTTIKILSRKDNAEAITLWTNIGMLPLALIPTIFVWVTPTAAQWPLIIGVGVVSSIGGYCFTRAVSAADARIMQPFQFSRMVFATAIGWIMFSEFPDLWTWIGAAVIFGASYYIVYREGLARK 666
PLFT++LAV L+Q AD HSW A +GF+GTLIVMRPGIIEITLA+ A+T A L AG+NTTIK+L+RKDNAE ITLWTN+ MLPLAL+P + WVTP+ QWPL+IG+G+VSSIGGYCFTR+VSAADARI+QPFQFSRM+FATAIGWIMFSE PD+WTW+GA VIFGASYYIVYREGLAR+
Sbjct: 1 PLFTMVLAVFILKQHADKHSWLACIIGFIGTLIVMRPGIIEITLASAAALTMAFLYAGTNTTIKLLARKDNAEVITLWTNLMMLPLALVPALIFWVTPSIEQWPLVIGIGIVSSIGGYCFTRSVSAADARIVQPFQFSRMIFATAIGWIMFSELPDIWTWVGAGVIFGASYYIVYREGLARR 182
BLAST of mRNA_L-digitata_M_contig101777.1.1 vs. uniprot
Match: A0A2E7QZ97_9PROT (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A2E7QZ97_9PROT) HSP 1 Score: 275 bits (704), Expect = 1.050e-89 Identity = 137/226 (60.62%), Postives = 179/226 (79.20%), Query Frame = 1
Query: 4 SELPFYGMRILFAFFAMVFLFYALARMPLADVYALQYTIPLFTILLAVLFLRQKADIHSWAAVFVGFVGTLIVMRPGIIEITLAAMGAITAACLSAGSNTTIKILSRKDNAEAITLWTNIGMLPLALIPTIFVWVTPTAAQWPLIIGVGVVSSIGGYCFTRAVSAADARIMQPFQFSRMVFATAIGWIMFSEFPDLWTWIGAAVIFGASYYIVYREGLARKAARKT 681
S LP Y +R+ FA+ AMV LF+A +MP+ADV+ALQ+TIPLFTILLAVL L+Q+ D +WAA +GF G LIVMRPG++E+T+AA AI +A +SAGSNTTIK+L+R ++ IT+++N+ MLPLAL+PT+FVWVTPT + P +IG + S++GG CFT AV AADAR++QPFQF+RM+FA IG+ MF E PD WTW+GAAVIFGASYYIV RE R + +K+
Sbjct: 67 SRLPLYCLRVFFAYTAMVMLFFAWGKMPIADVFALQFTIPLFTILLAVLILKQQTDRQAWAACLIGFCGALIVMRPGVVELTMAAAAAIASALMSAGSNTTIKLLTRTESVGTITVYSNLLMLPLALVPTLFVWVTPTLTEVPWVIGAALFSAVGGLCFTLAVGAADARVVQPFQFTRMIFAAVIGYWMFFELPDFWTWVGAAVIFGASYYIVLREAKERSSYQKS 292
BLAST of mRNA_L-digitata_M_contig101777.1.1 vs. uniprot
Match: A0A2E5V3M3_9PROT (Uncharacterized protein n=3 Tax=Rhodospirillales TaxID=204441 RepID=A0A2E5V3M3_9PROT) HSP 1 Score: 272 bits (695), Expect = 2.340e-88 Identity = 137/217 (63.13%), Postives = 172/217 (79.26%), Query Frame = 1
Query: 4 SELPFYGMRILFAFFAMVFLFYALARMPLADVYALQYTIPLFTILLAVLFLRQKADIHSWAAVFVGFVGTLIVMRPGIIEITLAAMGAITAACLSAGSNTTIKILSRKDNAEAITLWTNIGMLPLALIPTIFVWVTPTAAQWPLIIGVGVVSSIGGYCFTRAVSAADARIMQPFQFSRMVFATAIGWIMFSEFPDLWTWIGAAVIFGASYYIVYREG 654
S +P Y +R+ FA+ AMV LF+A +MP+ADV+ALQ+TIPLFTI+LAVL L+ D HSW A FVG VG LIVMRPG+IE+T AA AI +A +SAGSNTT+KIL++ +NA IT+++N+ MLPLALIPT FVWVTPT Q P ++G S+IGG CFT +V AADAR++QPFQF+RM+FA IG++MF E PD WTWIGAA+IF +SYYIV REG
Sbjct: 66 SRIPLYSLRVTFAYTAMVLLFFAWGKMPIADVFALQFTIPLFTIVLAVLILKXPTDHHSWLACFVGLVGALIVMRPGVIELTAAAAAAIASAMMSAGSNTTLKILTKTENAGTITIYSNLLMLPLALIPTFFVWVTPTTEQLPWVLGAAFFSAIGGLCFTLSVGAADARVVQPFQFTRMIFAALIGYLMFLELPDTWTWIGAAIIFISSYYIVLREG 282
BLAST of mRNA_L-digitata_M_contig101777.1.1 vs. uniprot
Match: A0A2E7QZ94_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7QZ94_9PROT) HSP 1 Score: 196 bits (499), Expect = 9.270e-59 Identity = 102/213 (47.89%), Postives = 145/213 (68.08%), Query Frame = 1
Query: 25 MRILFAFFAMVFLFYALARMPLADVYALQYTIPLFTILLAVLFLRQKADIHSWAAVFVGFVGTLIVMRPGIIEITLAAMGAITAACLSAGSNTTIKILSRKDNAEAITLWTNIGMLPLALIPTIFVWVTPTAAQWPLIIGVGVVSSIGGYCFTRAVSAADARIMQPFQFSRMVFATAIGWIMFSEFPDLWTWIGAAVIFGASYYIVYREGLAR 663
+R LF + AM ++ALA MP+ADVYALQ+T+PLF IL A+LFL +KA + SW A +GFVGTLI++RPG IT+AA+ A+ +A L + +N IK LSR ++ IT++ N+ M+ +ALIP +F W P +I +GV ++ G + RA++ ADARI+ PF F RM F +G++MF + P LWTW+GA VIFGA+YY++ E R
Sbjct: 83 LRGLFTYLAMGATYFALANMPIADVYALQFTLPLFMILAAILFLGEKARMGSWVACIIGFVGTLIILRPGFETITIAALAALASAVLYSCTNVFIKKLSRTESTTTITVFGNLVMVVIALIPLLFSWRLPPTQTIGWVIALGVFTTAGQWALARAIATADARIVWPFDFLRMPFTVGVGYVMFGQLPGLWTWVGAVVIFGAAYYVIREEAAVR 295
BLAST of mRNA_L-digitata_M_contig101777.1.1 vs. uniprot
Match: A0A2E6GQ10_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6GQ10_9PROT) HSP 1 Score: 196 bits (497), Expect = 1.850e-58 Identity = 102/209 (48.80%), Postives = 146/209 (69.86%), Query Frame = 1
Query: 37 FAFFAMVFLFYALARMPLADVYALQYTIPLFTILLAVLFLRQKADIHSWAAVFVGFVGTLIVMRPGIIEITLAAMGAITAACLSAGSNTTIKILSRKDNAEAITLWTNIGMLPLALIPTIFVWVTPTAAQWPLIIGVGVVSSIGGYCFTRAVSAADARIMQPFQFSRMVFATAIGWIMFSEFPDLWTWIGAAVIFGASYYIVYREGLAR 663
F + AM +YALA MP+ADVYALQ+T+PLF I++AVLFL +KA SW A VGF GTLI++RPG EI++AA+ A+ +A L + +N IKILSR ++ IT++ N+ ML +ALIP +F W P II +GV ++ G + R+++ ADARI+ PF F R+ F AIG++MF++ P +WTW+G+ VIFGA+YY++ E A+
Sbjct: 87 FTYLAMGATYYALANMPIADVYALQFTLPLFMIIVAVLFLGEKASFGSWVACLVGFGGTLIILRPGFEEISIAAIAALASAVLYSTTNVFIKILSRTESTTTITVFGNLVMLVIALIPLLFDWRWPPVETVGWIIALGVFTTGGQWALARSIATADARIVWPFDFLRLPFTAAIGFVMFAQLPGIWTWVGSVVIFGAAYYVIRMEAAAK 295
BLAST of mRNA_L-digitata_M_contig101777.1.1 vs. uniprot
Match: A0A2E6GRA7_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6GRA7_9PROT) HSP 1 Score: 193 bits (491), Expect = 1.920e-57 Identity = 99/231 (42.86%), Postives = 148/231 (64.07%), Query Frame = 1
Query: 4 SELPFYGMRILFAFFAMVFLFYALARMPLADVYALQYTIPLFTILLAVLFLRQKADIHSWAAVFVGFVGTLIVMRPGIIEITLAAMGAITAACLSAGSNTTIKILSRKDNAEAITLWTNIGMLPLALIPTIFVWVTPTAAQWPLIIGVGVVSSIGGYCFTRAVSAADARIMQPFQFSRMVFATAIGWIMFSEFPDLWTWIGAAVIFGASYYIVYREGLARKAARKTQHADG 696
+ LP Y +R F++ MV +F+ LA MP+ +VYAL + +P+ TI++AV L+++A I +W A V F+G L+++RPGII ITLAA + A A +N IK LSR D+ IT + + LPLAL+P +FVW TP+ + PLI +G + + G +V AADAR++QPF F R+ + I +I+FSE P WTW+GA +IF +SYY++Y+EG ++A + G
Sbjct: 72 TRLPLYMVRTAFSYTGMVCVFFGLANMPIGEVYALLFLVPMITIVMAVFILKERAGIEAWLACGVAFIGALVILRPGIIAITLAAAAVLVTAITYAATNICIKSLSRTDSPAQITFYGQLLALPLALVPALFVWKTPSWSDLPLIFALGTLQLLAGLFHAYSVRAADARVVQPFNFVRLPASVLIAFILFSELPSPWTWLGATLIFASSYYVLYKEGAKKEAVSDGEGTHG 302
BLAST of mRNA_L-digitata_M_contig101777.1.1 vs. uniprot
Match: A0A2E5V3H8_9PROT (Uncharacterized protein n=3 Tax=Rhodospirillales TaxID=204441 RepID=A0A2E5V3H8_9PROT) HSP 1 Score: 190 bits (482), Expect = 2.660e-56 Identity = 93/210 (44.29%), Postives = 140/210 (66.67%), Query Frame = 1
Query: 13 PFYGMRILFAFFAMVFLFYALARMPLADVYALQYTIPLFTILLAVLFLRQKADIHSWAAVFVGFVGTLIVMRPGIIEITLAAMGAITAACLSAGSNTTIKILSRKDNAEAITLWTNIGMLPLALIPTIFVWVTPTAAQWPLIIGVGVVSSIGGYCFTRAVSAADARIMQPFQFSRMVFATAIGWIMFSEFPDLWTWIGAAVIFGASYYIV 642
P + +R L +FA++ FYA +P+ D +A+Q+ PLFTI +A L LR+K + SW A VGF+G L+++RPG I I+L + A+ A A NT IK+LSR D+ +T + N+ +LPL+ IP W TP + WP++IGV + +++ +C ++S ADAR++QP F RM A A+G+++F EFPDLWTW+GA +IFGA++Y V
Sbjct: 72 PLHCVRTLITYFAILLWFYATEHVPVGDFFAIQFVSPLFTIAVAALLLREKVGLKSWLAAIVGFLGVLVIIRPGYIPISLGIIAALGTAGAYAFVNTCIKVLSRYDSPAVMTFYVNVLILPLSAIPAYLTWKTPQSEDWPILIGVALSATMAQFCVASSISLADARVVQPMNFLRMPIAAAMGFMVFGEFPDLWTWVGAIIIFGAAWYAV 281 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101777.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig101777.1.1 >prot_L-digitata_M_contig101777.1.1 ID=prot_L-digitata_M_contig101777.1.1|Name=mRNA_L-digitata_M_contig101777.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=228bp MRILFAFFAMVFLFYALARMPLADVYALQYTIPLFTILLAVLFLRQKADIback to top mRNA from alignment at L-digitata_M_contig101777:214..921- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig101777.1.1 ID=mRNA_L-digitata_M_contig101777.1.1|Name=mRNA_L-digitata_M_contig101777.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=708bp|location=Sequence derived from alignment at L-digitata_M_contig101777:214..921- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig101777:214..921- >mRNA_L-digitata_M_contig101777.1.1 ID=mRNA_L-digitata_M_contig101777.1.1|Name=mRNA_L-digitata_M_contig101777.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=684bp|location=Sequence derived from alignment at L-digitata_M_contig101777:214..921- (Laminaria digitata LdigPH10_18mv male)back to top |