mRNA_L-digitata_M_contig101771.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig101771.1.1 vs. uniprot
Match: A0A2D7FKL3_9PROT (tRNA pseudouridine synthase B n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FKL3_9PROT) HSP 1 Score: 286 bits (733), Expect = 6.030e-95 Identity = 147/165 (89.09%), Postives = 154/165 (93.33%), Query Frame = 1
Query: 1 LIGRPDPDHAVFEVDCGKGTYIRSLARDLGVRLGTVAYVSELRRTVCGPFSEKDAISLDKLAESMLSAPPQDTLLPVTTALDDIPALAMTDTQTGYLRHGRAVRVRSGSTLFVDANQLDALCDGDVLCAMSGDIPVALVRLEGEEIQPVRVLNIEGAPMTGAETE 495
L+ R DPDHAVFEV+CGKGTYIRSLARDLGVRLGTVAYVSELRRT+CGPFSEKDAISLDKLAESMLSA PQDTLLPVTTALDDIPALAMTDTQT +LRHGRAVR R GST+FVDAN+LDAL DGDVLCAMSG+IPVALVRLEGEEIQPVRVLNIEGA AETE
Sbjct: 159 LVDRLDPDHAVFEVECGKGTYIRSLARDLGVRLGTVAYVSELRRTLCGPFSEKDAISLDKLAESMLSATPQDTLLPVTTALDDIPALAMTDTQTDHLRHGRAVRARRGSTIFVDANKLDALRDGDVLCAMSGEIPVALVRLEGEEIQPVRVLNIEGAHRPSAETE 323
BLAST of mRNA_L-digitata_M_contig101771.1.1 vs. uniprot
Match: A0A2S6QA14_9PROT (tRNA pseudouridine synthase B n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6QA14_9PROT) HSP 1 Score: 256 bits (655), Expect = 5.080e-83 Identity = 130/165 (78.79%), Postives = 140/165 (84.85%), Query Frame = 1
Query: 1 LIGRPDPDHAVFEVDCGKGTYIRSLARDLGVRLGTVAYVSELRRTVCGPFSEKDAISLDKLAESMLSAPPQDTLLPVTTALDDIPALAMTDTQTGYLRHGRAVRVRSGSTLFVDANQLDALCDGDVLCAMSGDIPVALVRLEGEEIQPVRVLNIEGAPMTGAETE 495
L+ RPDPDHAVFEVDCGKGTYIRSLARDLG LGTVA+VSELRRT CGPF EKDAISLD LA S+L APPQ++LL V TALDDIPALAMT TQ YLRHGRAVRVRSGS +FVD QLD +CDGDVLCAMSGD PVAL RLEGEEI+P+RV N+EGA AE E
Sbjct: 166 LVDRPDPDHAVFEVDCGKGTYIRSLARDLGKVLGTVAHVSELRRTRCGPFHEKDAISLDTLAGSVLCAPPQESLLDVMTALDDIPALAMTATQARYLRHGRAVRVRSGSAIFVDGTQLDTICDGDVLCAMSGDTPVALARLEGEEIRPLRVFNLEGASKESAEME 330
BLAST of mRNA_L-digitata_M_contig101771.1.1 vs. uniprot
Match: A0A520NVS8_9PROT (tRNA pseudouridine synthase B n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NVS8_9PROT) HSP 1 Score: 253 bits (646), Expect = 9.460e-82 Identity = 131/165 (79.39%), Postives = 142/165 (86.06%), Query Frame = 1
Query: 1 LIGRPDPDHAVFEVDCGKGTYIRSLARDLGVRLGTVAYVSELRRTVCGPFSEKDAISLDKLAESMLSAPPQDTLLPVTTALDDIPALAMTDTQTGYLRHGRAVRVRSGSTLFVDANQLDALCDGDVLCAMSGDIPVALVRLEGEEIQPVRVLNIEGAPMTGAETE 495
L+ R D DHAVFEVDCGKGTYIRSLARDLG LGT A+VS LRRT CGPFSEKDAISLD LAES+L APPQ+ LLPVTTALDDIPALAMT+TQTGYLRHGR VRVRSG T+FVDANQLDAL D +VLCAMSG+ PVAL L+GEEI+P+RVLNIE A AETE
Sbjct: 159 LVDRLDADHAVFEVDCGKGTYIRSLARDLGKALGTCAHVSALRRTRCGPFSEKDAISLDTLAESVLCAPPQECLLPVTTALDDIPALAMTETQTGYLRHGRPVRVRSGGTIFVDANQLDALRDCEVLCAMSGETPVALACLDGEEIRPLRVLNIESAGENSAETE 323
BLAST of mRNA_L-digitata_M_contig101771.1.1 vs. uniprot
Match: A0A2D8PRT5_9PROT (tRNA pseudouridine synthase B n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PRT5_9PROT) HSP 1 Score: 229 bits (584), Expect = 2.300e-72 Identity = 115/165 (69.70%), Postives = 131/165 (79.39%), Query Frame = 1
Query: 1 LIGRPDPDHAVFEVDCGKGTYIRSLARDLGVRLGTVAYVSELRRTVCGPFSEKDAISLDKLAESMLSAPPQDTLLPVTTALDDIPALAMTDTQTGYLRHGRAVRVRSGSTLFVDANQLDALCDGDVLCAMSGDIPVALVRLEGEEIQPVRVLNIEGAPMTGAETE 495
++ RP D AVF+V CGKGTYIRSLARDLG LG+ A+V++LRRT CGPF E AISLDKL E++L AP QD LLPVTTALDDIPALAMT+TQ G LRHGR VR RS T FVDANQLDA+ DGDVLCAM G+ PVAL LEGE+I+P+RV N+E A G ETE
Sbjct: 159 MVARPGGDRAVFDVTCGKGTYIRSLARDLGRALGSAAHVADLRRTRCGPFDENHAISLDKLGETVLCAPSQDCLLPVTTALDDIPALAMTETQAGNLRHGRTVRARSSGTFFVDANQLDAVRDGDVLCAMKGETPVALACLEGEDIRPIRVFNLESAHFEGVETE 323
BLAST of mRNA_L-digitata_M_contig101771.1.1 vs. uniprot
Match: A0A2D8G583_9PROT (tRNA pseudouridine synthase B n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G583_9PROT) HSP 1 Score: 225 bits (573), Expect = 7.630e-71 Identity = 113/154 (73.38%), Postives = 132/154 (85.71%), Query Frame = 1
Query: 1 LIGRPDPDHAVFEVDCGKGTYIRSLARDLGVRLGTVAYVSELRRTVCGPFSEKDAISLDKLAESMLSAPPQDTLLPVTTALDDIPALAMTDTQTGYLRHGRAVRVRSGSTLFVDANQLDALCDGDVLCAMSGDIPVALVRLEGEEIQPVRVLNI 462
L+GRP+ D A+FEVDCGKGTYIRSLARDLG LGTVAYVS+LRR CGPF +KDAISL L++S+L APPQ+ LL + TALDDIPALA+T+TQTGY RHGR VRVRSG +FVDANQL A+ +GDVL AMSG+ PVAL RLEGEEI+P+RVLN+
Sbjct: 159 LLGRPNSDSAIFEVDCGKGTYIRSLARDLGKFLGTVAYVSKLRRIRCGPFCQKDAISLATLSKSVLCAPPQEVLLSIATALDDIPALAVTETQTGYXRHGRXVRVRSGGAIFVDANQLGAIQEGDVLFAMSGENPVALARLEGEEIRPMRVLNL 312
BLAST of mRNA_L-digitata_M_contig101771.1.1 vs. uniprot
Match: A0A2E5L7Z3_9PROT (tRNA pseudouridine synthase B n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5L7Z3_9PROT) HSP 1 Score: 196 bits (497), Expect = 2.310e-59 Identity = 102/154 (66.23%), Postives = 118/154 (76.62%), Query Frame = 1
Query: 1 LIGRPDPDHAVFEVDCGKGTYIRSLARDLGVRLGTVAYVSELRRTVCGPFSEKDAISLDKLAESMLSAPPQDTLLPVTTALDDIPALAMTDTQTGYLRHGRAVRVRSGSTLFVDANQLDALCDGDVLCAMSGDIPVALVRLEGEEIQPVRVLNI 462
L RP+ D AVFEV CGKGTYIRSL RDLG +LGTVAYVSELRRT CGPF+EK AISLDKLA S+L APPQ+ LL V+ ALDDIPALA+T+TQ LRHGR+V+ T FVD ++ + DGDVLCAM G VALVR + EI P+RVLN+
Sbjct: 159 LASRPNKDTAVFEVTCGKGTYIRSLVRDLGAKLGTVAYVSELRRTHCGPFNEKSAISLDKLAISVLCAPPQEYLLSVSAALDDIPALALTETQADLLRHGRSVQQVKDKTTFVDPSETKVIGDGDVLCAMLGQKLVALVRFQDREIWPIRVLNL 312
BLAST of mRNA_L-digitata_M_contig101771.1.1 vs. uniprot
Match: A0A6N7F2Y6_9PROT (tRNA pseudouridine synthase B n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7F2Y6_9PROT) HSP 1 Score: 181 bits (458), Expect = 1.640e-53 Identity = 97/155 (62.58%), Postives = 115/155 (74.19%), Query Frame = 1
Query: 1 LIGRPDPDHAVFEVDCGKGTYIRSLARDLGVRLGTVAYVSELRRTVCGPFSEKDAISLDKLAESMLSAPPQDTLLPVTTALDDIPALAMTDTQTGYLRHGRAVRVRSGS-TLFVDANQLDALCDGDVLCAMSGDIPVALVRLEGEEIQPVRVLNI 462
L+ RPD DHAVFEV CGKGTY+R+LARDL +RLGTV +++ LRRT CGPF+E+ AISLD LA M SAPP + LL V TALDDIPALA+ TQ +LRHGR VRVR FV+ LD DG VLCAM+ VAL RL G+EI+P+RVLN+
Sbjct: 159 LVARPDADHAVFEVSCGKGTYMRALARDLSLRLGTVGHIAALRRTRCGPFTEEGAISLDSLATLMHSAPPSEYLLAVETALDDIPALALNATQADHLRHGRPVRVRGEEGRRFVETGSLD---DGAVLCAMAEGRAVALARLVGDEIRPMRVLNV 310
BLAST of mRNA_L-digitata_M_contig101771.1.1 vs. uniprot
Match: A0A1Y6CU02_9HYPH (tRNA pseudouridine synthase B n=1 Tax=Tistlia consotensis USBA 355 TaxID=560819 RepID=A0A1Y6CU02_9HYPH) HSP 1 Score: 163 bits (412), Expect = 1.300e-46 Identity = 83/154 (53.90%), Postives = 113/154 (73.38%), Query Frame = 1
Query: 1 LIGRPDPDHAVFEVDCGKGTYIRSLARDLGVRLGTVAYVSELRRTVCGPFSEKDAISLDKLAESMLSAPPQDTLLPVTTALDDIPALAMTDTQTGYLRHGRAVRVRSGSTLFVDANQLDALCDGDVLCAMSGDIPVALVRLEGEEIQPVRVLNI 462
LI PDPDH VFEVDCGKGTY+RSLARDLG LG + ++++LRR GPF+E+DAISLD L + SA P++ LLPV TALDDIPALA+T+ + L+ G+A+ + + S+ A ++ L GD++CAMSG PVA+ R E E++P+RV+N+
Sbjct: 160 LIDLPDPDHGVFEVDCGKGTYMRSLARDLGEALGCLGHIAQLRRLAVGPFTEEDAISLDTLEANADSARPEELLLPVETALDDIPALALTEAEASRLKSGQALSMLARSS----AERIRHLEPGDIVCAMSGGKPVAISRFEAGELRPIRVINL 309
BLAST of mRNA_L-digitata_M_contig101771.1.1 vs. uniprot
Match: A0A2E7QX80_9PROT (tRNA pseudouridine synthase B n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7QX80_9PROT) HSP 1 Score: 162 bits (411), Expect = 1.980e-46 Identity = 90/155 (58.06%), Postives = 108/155 (69.68%), Query Frame = 1
Query: 1 LIGRPDPDHAVFEVDCGKGTYIRSLARDLGVRLGTVAYVSELRRTVCGPFSEKDAISLDKLAESMLSAPPQDTLLPVTTALDDIPALAMTDTQTGYLRHGRAVRVR-SGSTLFVDANQLDALCDGDVLCAMSGDIPVALVRLEGEEIQPVRVLNI 462
L+ PD +HA+FEV CGKGTYIRSLARD+ RL TV YVS+LRRT CGPFSEK +ISL+ L + SAPP LL V ALDDIPA + TQ +LRHGR VRV+ SG F++ + +L +GDV CAM+ PVAL R EI+ VRVLNI
Sbjct: 159 LLETPDKNHAIFEVLCGKGTYIRSLARDIARRLDTVGYVSQLRRTQCGPFSEKHSISLETLQTLVHSAPPSAYLLDVEAALDDIPAFTLNQTQADHLRHGRPVRVQNSGGRSFLETS---SLVEGDVFCAMADGKPVALARFADGEIRAVRVLNI 310
BLAST of mRNA_L-digitata_M_contig101771.1.1 vs. uniprot
Match: A0A7C1UGN6_9PROT (tRNA pseudouridine synthase B n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A7C1UGN6_9PROT) HSP 1 Score: 155 bits (392), Expect = 1.250e-43 Identity = 86/154 (55.84%), Postives = 105/154 (68.18%), Query Frame = 1
Query: 1 LIGRPDPDHAVFEVDCGKGTYIRSLARDLGVRLGTVAYVSELRRTVCGPFSEKDAISLDKLAESMLSAPPQDTLLPVTTALDDIPALAMTDTQTGYLRHGRAVRVRSGSTLFVDANQLDALCDGDVLCAMSGDIPVALVRLEGEEIQPVRVLNI 462
L+ RPD DHAVFEV CGKGTY+RS+ARDL +LGT +VS LRRT GPF E AISLDKL SAP D LLPV T LDDIPALA+T+ + LRHG+ V + V + L+ + G V+CAM+ PVAL R+EG EI+P+RV N+
Sbjct: 159 LLDRPDKDHAVFEVACGKGTYVRSIARDLARKLGTFGHVSALRRTRVGPFGEDRAISLDKLDGLGHSAPLADLLLPVETVLDDIPALALTEEEARRLRHGQGV----SALHVVSRSPLENISQGVVVCAMAEGKPVALARIEGGEIRPLRVFNM 308 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101771.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig101771.1.1 >prot_L-digitata_M_contig101771.1.1 ID=prot_L-digitata_M_contig101771.1.1|Name=mRNA_L-digitata_M_contig101771.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=166bp LIGRPDPDHAVFEVDCGKGTYIRSLARDLGVRLGTVAYVSELRRTVCGPFback to top mRNA from alignment at L-digitata_M_contig101771:2..499+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig101771.1.1 ID=mRNA_L-digitata_M_contig101771.1.1|Name=mRNA_L-digitata_M_contig101771.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=498bp|location=Sequence derived from alignment at L-digitata_M_contig101771:2..499+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig101771:2..499+ >mRNA_L-digitata_M_contig101771.1.1 ID=mRNA_L-digitata_M_contig101771.1.1|Name=mRNA_L-digitata_M_contig101771.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=498bp|location=Sequence derived from alignment at L-digitata_M_contig101771:2..499+ (Laminaria digitata LdigPH10_18mv male)back to top |