mRNA_L-digitata_M_contig101771.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101771.1.1
Unique NamemRNA_L-digitata_M_contig101771.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101771.1.1 vs. uniprot
Match: A0A2D7FKL3_9PROT (tRNA pseudouridine synthase B n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FKL3_9PROT)

HSP 1 Score: 286 bits (733), Expect = 6.030e-95
Identity = 147/165 (89.09%), Postives = 154/165 (93.33%), Query Frame = 1
Query:    1 LIGRPDPDHAVFEVDCGKGTYIRSLARDLGVRLGTVAYVSELRRTVCGPFSEKDAISLDKLAESMLSAPPQDTLLPVTTALDDIPALAMTDTQTGYLRHGRAVRVRSGSTLFVDANQLDALCDGDVLCAMSGDIPVALVRLEGEEIQPVRVLNIEGAPMTGAETE 495
            L+ R DPDHAVFEV+CGKGTYIRSLARDLGVRLGTVAYVSELRRT+CGPFSEKDAISLDKLAESMLSA PQDTLLPVTTALDDIPALAMTDTQT +LRHGRAVR R GST+FVDAN+LDAL DGDVLCAMSG+IPVALVRLEGEEIQPVRVLNIEGA    AETE
Sbjct:  159 LVDRLDPDHAVFEVECGKGTYIRSLARDLGVRLGTVAYVSELRRTLCGPFSEKDAISLDKLAESMLSATPQDTLLPVTTALDDIPALAMTDTQTDHLRHGRAVRARRGSTIFVDANKLDALRDGDVLCAMSGEIPVALVRLEGEEIQPVRVLNIEGAHRPSAETE 323          
BLAST of mRNA_L-digitata_M_contig101771.1.1 vs. uniprot
Match: A0A2S6QA14_9PROT (tRNA pseudouridine synthase B n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6QA14_9PROT)

HSP 1 Score: 256 bits (655), Expect = 5.080e-83
Identity = 130/165 (78.79%), Postives = 140/165 (84.85%), Query Frame = 1
Query:    1 LIGRPDPDHAVFEVDCGKGTYIRSLARDLGVRLGTVAYVSELRRTVCGPFSEKDAISLDKLAESMLSAPPQDTLLPVTTALDDIPALAMTDTQTGYLRHGRAVRVRSGSTLFVDANQLDALCDGDVLCAMSGDIPVALVRLEGEEIQPVRVLNIEGAPMTGAETE 495
            L+ RPDPDHAVFEVDCGKGTYIRSLARDLG  LGTVA+VSELRRT CGPF EKDAISLD LA S+L APPQ++LL V TALDDIPALAMT TQ  YLRHGRAVRVRSGS +FVD  QLD +CDGDVLCAMSGD PVAL RLEGEEI+P+RV N+EGA    AE E
Sbjct:  166 LVDRPDPDHAVFEVDCGKGTYIRSLARDLGKVLGTVAHVSELRRTRCGPFHEKDAISLDTLAGSVLCAPPQESLLDVMTALDDIPALAMTATQARYLRHGRAVRVRSGSAIFVDGTQLDTICDGDVLCAMSGDTPVALARLEGEEIRPLRVFNLEGASKESAEME 330          
BLAST of mRNA_L-digitata_M_contig101771.1.1 vs. uniprot
Match: A0A520NVS8_9PROT (tRNA pseudouridine synthase B n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NVS8_9PROT)

HSP 1 Score: 253 bits (646), Expect = 9.460e-82
Identity = 131/165 (79.39%), Postives = 142/165 (86.06%), Query Frame = 1
Query:    1 LIGRPDPDHAVFEVDCGKGTYIRSLARDLGVRLGTVAYVSELRRTVCGPFSEKDAISLDKLAESMLSAPPQDTLLPVTTALDDIPALAMTDTQTGYLRHGRAVRVRSGSTLFVDANQLDALCDGDVLCAMSGDIPVALVRLEGEEIQPVRVLNIEGAPMTGAETE 495
            L+ R D DHAVFEVDCGKGTYIRSLARDLG  LGT A+VS LRRT CGPFSEKDAISLD LAES+L APPQ+ LLPVTTALDDIPALAMT+TQTGYLRHGR VRVRSG T+FVDANQLDAL D +VLCAMSG+ PVAL  L+GEEI+P+RVLNIE A    AETE
Sbjct:  159 LVDRLDADHAVFEVDCGKGTYIRSLARDLGKALGTCAHVSALRRTRCGPFSEKDAISLDTLAESVLCAPPQECLLPVTTALDDIPALAMTETQTGYLRHGRPVRVRSGGTIFVDANQLDALRDCEVLCAMSGETPVALACLDGEEIRPLRVLNIESAGENSAETE 323          
BLAST of mRNA_L-digitata_M_contig101771.1.1 vs. uniprot
Match: A0A2D8PRT5_9PROT (tRNA pseudouridine synthase B n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PRT5_9PROT)

HSP 1 Score: 229 bits (584), Expect = 2.300e-72
Identity = 115/165 (69.70%), Postives = 131/165 (79.39%), Query Frame = 1
Query:    1 LIGRPDPDHAVFEVDCGKGTYIRSLARDLGVRLGTVAYVSELRRTVCGPFSEKDAISLDKLAESMLSAPPQDTLLPVTTALDDIPALAMTDTQTGYLRHGRAVRVRSGSTLFVDANQLDALCDGDVLCAMSGDIPVALVRLEGEEIQPVRVLNIEGAPMTGAETE 495
            ++ RP  D AVF+V CGKGTYIRSLARDLG  LG+ A+V++LRRT CGPF E  AISLDKL E++L AP QD LLPVTTALDDIPALAMT+TQ G LRHGR VR RS  T FVDANQLDA+ DGDVLCAM G+ PVAL  LEGE+I+P+RV N+E A   G ETE
Sbjct:  159 MVARPGGDRAVFDVTCGKGTYIRSLARDLGRALGSAAHVADLRRTRCGPFDENHAISLDKLGETVLCAPSQDCLLPVTTALDDIPALAMTETQAGNLRHGRTVRARSSGTFFVDANQLDAVRDGDVLCAMKGETPVALACLEGEDIRPIRVFNLESAHFEGVETE 323          
BLAST of mRNA_L-digitata_M_contig101771.1.1 vs. uniprot
Match: A0A2D8G583_9PROT (tRNA pseudouridine synthase B n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G583_9PROT)

HSP 1 Score: 225 bits (573), Expect = 7.630e-71
Identity = 113/154 (73.38%), Postives = 132/154 (85.71%), Query Frame = 1
Query:    1 LIGRPDPDHAVFEVDCGKGTYIRSLARDLGVRLGTVAYVSELRRTVCGPFSEKDAISLDKLAESMLSAPPQDTLLPVTTALDDIPALAMTDTQTGYLRHGRAVRVRSGSTLFVDANQLDALCDGDVLCAMSGDIPVALVRLEGEEIQPVRVLNI 462
            L+GRP+ D A+FEVDCGKGTYIRSLARDLG  LGTVAYVS+LRR  CGPF +KDAISL  L++S+L APPQ+ LL + TALDDIPALA+T+TQTGY RHGR VRVRSG  +FVDANQL A+ +GDVL AMSG+ PVAL RLEGEEI+P+RVLN+
Sbjct:  159 LLGRPNSDSAIFEVDCGKGTYIRSLARDLGKFLGTVAYVSKLRRIRCGPFCQKDAISLATLSKSVLCAPPQEVLLSIATALDDIPALAVTETQTGYXRHGRXVRVRSGGAIFVDANQLGAIQEGDVLFAMSGENPVALARLEGEEIRPMRVLNL 312          
BLAST of mRNA_L-digitata_M_contig101771.1.1 vs. uniprot
Match: A0A2E5L7Z3_9PROT (tRNA pseudouridine synthase B n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5L7Z3_9PROT)

HSP 1 Score: 196 bits (497), Expect = 2.310e-59
Identity = 102/154 (66.23%), Postives = 118/154 (76.62%), Query Frame = 1
Query:    1 LIGRPDPDHAVFEVDCGKGTYIRSLARDLGVRLGTVAYVSELRRTVCGPFSEKDAISLDKLAESMLSAPPQDTLLPVTTALDDIPALAMTDTQTGYLRHGRAVRVRSGSTLFVDANQLDALCDGDVLCAMSGDIPVALVRLEGEEIQPVRVLNI 462
            L  RP+ D AVFEV CGKGTYIRSL RDLG +LGTVAYVSELRRT CGPF+EK AISLDKLA S+L APPQ+ LL V+ ALDDIPALA+T+TQ   LRHGR+V+     T FVD ++   + DGDVLCAM G   VALVR +  EI P+RVLN+
Sbjct:  159 LASRPNKDTAVFEVTCGKGTYIRSLVRDLGAKLGTVAYVSELRRTHCGPFNEKSAISLDKLAISVLCAPPQEYLLSVSAALDDIPALALTETQADLLRHGRSVQQVKDKTTFVDPSETKVIGDGDVLCAMLGQKLVALVRFQDREIWPIRVLNL 312          
BLAST of mRNA_L-digitata_M_contig101771.1.1 vs. uniprot
Match: A0A6N7F2Y6_9PROT (tRNA pseudouridine synthase B n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7F2Y6_9PROT)

HSP 1 Score: 181 bits (458), Expect = 1.640e-53
Identity = 97/155 (62.58%), Postives = 115/155 (74.19%), Query Frame = 1
Query:    1 LIGRPDPDHAVFEVDCGKGTYIRSLARDLGVRLGTVAYVSELRRTVCGPFSEKDAISLDKLAESMLSAPPQDTLLPVTTALDDIPALAMTDTQTGYLRHGRAVRVRSGS-TLFVDANQLDALCDGDVLCAMSGDIPVALVRLEGEEIQPVRVLNI 462
            L+ RPD DHAVFEV CGKGTY+R+LARDL +RLGTV +++ LRRT CGPF+E+ AISLD LA  M SAPP + LL V TALDDIPALA+  TQ  +LRHGR VRVR      FV+   LD   DG VLCAM+    VAL RL G+EI+P+RVLN+
Sbjct:  159 LVARPDADHAVFEVSCGKGTYMRALARDLSLRLGTVGHIAALRRTRCGPFTEEGAISLDSLATLMHSAPPSEYLLAVETALDDIPALALNATQADHLRHGRPVRVRGEEGRRFVETGSLD---DGAVLCAMAEGRAVALARLVGDEIRPMRVLNV 310          
BLAST of mRNA_L-digitata_M_contig101771.1.1 vs. uniprot
Match: A0A1Y6CU02_9HYPH (tRNA pseudouridine synthase B n=1 Tax=Tistlia consotensis USBA 355 TaxID=560819 RepID=A0A1Y6CU02_9HYPH)

HSP 1 Score: 163 bits (412), Expect = 1.300e-46
Identity = 83/154 (53.90%), Postives = 113/154 (73.38%), Query Frame = 1
Query:    1 LIGRPDPDHAVFEVDCGKGTYIRSLARDLGVRLGTVAYVSELRRTVCGPFSEKDAISLDKLAESMLSAPPQDTLLPVTTALDDIPALAMTDTQTGYLRHGRAVRVRSGSTLFVDANQLDALCDGDVLCAMSGDIPVALVRLEGEEIQPVRVLNI 462
            LI  PDPDH VFEVDCGKGTY+RSLARDLG  LG + ++++LRR   GPF+E+DAISLD L  +  SA P++ LLPV TALDDIPALA+T+ +   L+ G+A+ + + S+    A ++  L  GD++CAMSG  PVA+ R E  E++P+RV+N+
Sbjct:  160 LIDLPDPDHGVFEVDCGKGTYMRSLARDLGEALGCLGHIAQLRRLAVGPFTEEDAISLDTLEANADSARPEELLLPVETALDDIPALALTEAEASRLKSGQALSMLARSS----AERIRHLEPGDIVCAMSGGKPVAISRFEAGELRPIRVINL 309          
BLAST of mRNA_L-digitata_M_contig101771.1.1 vs. uniprot
Match: A0A2E7QX80_9PROT (tRNA pseudouridine synthase B n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7QX80_9PROT)

HSP 1 Score: 162 bits (411), Expect = 1.980e-46
Identity = 90/155 (58.06%), Postives = 108/155 (69.68%), Query Frame = 1
Query:    1 LIGRPDPDHAVFEVDCGKGTYIRSLARDLGVRLGTVAYVSELRRTVCGPFSEKDAISLDKLAESMLSAPPQDTLLPVTTALDDIPALAMTDTQTGYLRHGRAVRVR-SGSTLFVDANQLDALCDGDVLCAMSGDIPVALVRLEGEEIQPVRVLNI 462
            L+  PD +HA+FEV CGKGTYIRSLARD+  RL TV YVS+LRRT CGPFSEK +ISL+ L   + SAPP   LL V  ALDDIPA  +  TQ  +LRHGR VRV+ SG   F++ +   +L +GDV CAM+   PVAL R    EI+ VRVLNI
Sbjct:  159 LLETPDKNHAIFEVLCGKGTYIRSLARDIARRLDTVGYVSQLRRTQCGPFSEKHSISLETLQTLVHSAPPSAYLLDVEAALDDIPAFTLNQTQADHLRHGRPVRVQNSGGRSFLETS---SLVEGDVFCAMADGKPVALARFADGEIRAVRVLNI 310          
BLAST of mRNA_L-digitata_M_contig101771.1.1 vs. uniprot
Match: A0A7C1UGN6_9PROT (tRNA pseudouridine synthase B n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A7C1UGN6_9PROT)

HSP 1 Score: 155 bits (392), Expect = 1.250e-43
Identity = 86/154 (55.84%), Postives = 105/154 (68.18%), Query Frame = 1
Query:    1 LIGRPDPDHAVFEVDCGKGTYIRSLARDLGVRLGTVAYVSELRRTVCGPFSEKDAISLDKLAESMLSAPPQDTLLPVTTALDDIPALAMTDTQTGYLRHGRAVRVRSGSTLFVDANQLDALCDGDVLCAMSGDIPVALVRLEGEEIQPVRVLNI 462
            L+ RPD DHAVFEV CGKGTY+RS+ARDL  +LGT  +VS LRRT  GPF E  AISLDKL     SAP  D LLPV T LDDIPALA+T+ +   LRHG+ V     +   V  + L+ +  G V+CAM+   PVAL R+EG EI+P+RV N+
Sbjct:  159 LLDRPDKDHAVFEVACGKGTYVRSIARDLARKLGTFGHVSALRRTRVGPFGEDRAISLDKLDGLGHSAPLADLLLPVETVLDDIPALALTEEEARRLRHGQGV----SALHVVSRSPLENISQGVVVCAMAEGKPVALARIEGGEIRPLRVFNM 308          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101771.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7FKL3_9PROT6.030e-9589.09tRNA pseudouridine synthase B n=1 Tax=Rhodospirill... [more]
A0A2S6QA14_9PROT5.080e-8378.79tRNA pseudouridine synthase B n=1 Tax=Alphaproteob... [more]
A0A520NVS8_9PROT9.460e-8279.39tRNA pseudouridine synthase B n=1 Tax=Rhodospirill... [more]
A0A2D8PRT5_9PROT2.300e-7269.70tRNA pseudouridine synthase B n=1 Tax=Rhodospirill... [more]
A0A2D8G583_9PROT7.630e-7173.38tRNA pseudouridine synthase B n=1 Tax=Alphaproteob... [more]
A0A2E5L7Z3_9PROT2.310e-5966.23tRNA pseudouridine synthase B n=1 Tax=Rhodospirill... [more]
A0A6N7F2Y6_9PROT1.640e-5362.58tRNA pseudouridine synthase B n=1 Tax=Alphaproteob... [more]
A0A1Y6CU02_9HYPH1.300e-4653.90tRNA pseudouridine synthase B n=1 Tax=Tistlia cons... [more]
A0A2E7QX80_9PROT1.980e-4658.06tRNA pseudouridine synthase B n=1 Tax=Rhodospirill... [more]
A0A7C1UGN6_9PROT1.250e-4355.84tRNA pseudouridine synthase B n=1 Tax=Rhodospirill... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101771contigL-digitata_M_contig101771:2..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1121033.AUCF01000003_gene3292
Preferred nametruB
PFAMsTruB-C_2,TruB_C_2,TruB_N
Model size498
Max annot lvl204441|Rhodospirillales
KEGG koko:K03177
Hectar predicted targeting categoryother localisation
Exons1
Evalue1e-42
EggNOG OGsCOG0130@1|root,COG0130@2|Bacteria,1MV0N@1224|Proteobacteria,2TSJK@28211|Alphaproteobacteria,2JQHY@204441|Rhodospirillales
EC5.4.99.25
DescriptionResponsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
Cds size498
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406622.4067361-CDS-L-digitata_M_contig101771:1..4991682406622.4067361-CDS-L-digitata_M_contig101771:1..499Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101771 2..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101771.1.1prot_L-digitata_M_contig101771.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101771 2..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101771.1.1

>prot_L-digitata_M_contig101771.1.1 ID=prot_L-digitata_M_contig101771.1.1|Name=mRNA_L-digitata_M_contig101771.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=166bp
LIGRPDPDHAVFEVDCGKGTYIRSLARDLGVRLGTVAYVSELRRTVCGPF
SEKDAISLDKLAESMLSAPPQDTLLPVTTALDDIPALAMTDTQTGYLRHG
RAVRVRSGSTLFVDANQLDALCDGDVLCAMSGDIPVALVRLEGEEIQPVR
VLNIEGAPMTGAETE*
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mRNA from alignment at L-digitata_M_contig101771:2..499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101771.1.1 ID=mRNA_L-digitata_M_contig101771.1.1|Name=mRNA_L-digitata_M_contig101771.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=498bp|location=Sequence derived from alignment at L-digitata_M_contig101771:2..499+ (Laminaria digitata LdigPH10_18mv male)
CTCATCGGCCGGCCCGATCCGGATCATGCGGTGTTTGAAGTCGACTGCGG CAAAGGCACTTATATCCGCAGCCTTGCCCGCGATTTGGGGGTTCGTCTCG GTACCGTCGCCTATGTGTCCGAACTGCGCCGCACAGTGTGTGGGCCGTTT TCCGAAAAAGATGCGATTTCGCTGGATAAACTGGCTGAATCCATGCTATC TGCCCCCCCGCAAGATACCTTGCTGCCCGTTACGACCGCGCTGGACGACA TCCCGGCGCTGGCCATGACGGATACCCAAACCGGCTACCTGCGTCATGGA CGCGCGGTTCGGGTGCGAAGCGGCAGTACACTTTTCGTCGATGCGAACCA GTTGGACGCGCTATGCGATGGAGATGTTCTGTGTGCCATGTCGGGTGACA TCCCGGTCGCGCTCGTCCGTCTCGAAGGAGAGGAAATCCAGCCGGTTCGG GTGCTTAACATCGAAGGCGCCCCCATGACGGGCGCGGAAACGGAGTAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig101771:2..499+

>mRNA_L-digitata_M_contig101771.1.1 ID=mRNA_L-digitata_M_contig101771.1.1|Name=mRNA_L-digitata_M_contig101771.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=498bp|location=Sequence derived from alignment at L-digitata_M_contig101771:2..499+ (Laminaria digitata LdigPH10_18mv male)
CTCATCGGCCGGCCCGATCCGGATCATGCGGTGTTTGAAGTCGACTGCGG
CAAAGGCACTTATATCCGCAGCCTTGCCCGCGATTTGGGGGTTCGTCTCG
GTACCGTCGCCTATGTGTCCGAACTGCGCCGCACAGTGTGTGGGCCGTTT
TCCGAAAAAGATGCGATTTCGCTGGATAAACTGGCTGAATCCATGCTATC
TGCCCCCCCGCAAGATACCTTGCTGCCCGTTACGACCGCGCTGGACGACA
TCCCGGCGCTGGCCATGACGGATACCCAAACCGGCTACCTGCGTCATGGA
CGCGCGGTTCGGGTGCGAAGCGGCAGTACACTTTTCGTCGATGCGAACCA
GTTGGACGCGCTATGCGATGGAGATGTTCTGTGTGCCATGTCGGGTGACA
TCCCGGTCGCGCTCGTCCGTCTCGAAGGAGAGGAAATCCAGCCGGTTCGG
GTGCTTAACATCGAAGGCGCCCCCATGACGGGCGCGGAAACGGAGTAA
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