mRNA_L-digitata_M_contig10174.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10174.1.1
Unique NamemRNA_L-digitata_M_contig10174.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig10174.1.1 vs. uniprot
Match: A0A6H5LEG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEG1_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.460e-11
Identity = 70/163 (42.94%), Postives = 82/163 (50.31%), Query Frame = 1 
Query:  157 VSTASHGAGCSCSSCAPRGAXXXXXXXXXXSSSAAVSGLXXXXXXXXXXXXVRMQAXXXXXXXXXXXTATAAGAFHGASXXXPACVSSAXXXXXXXXXXXXSGGRGKRAASSLTVMGMGAGQQEELGEAATAFRQRLVEEPQSVVFEDTMAAVTQGFDYSPKR 645
            +S+ +HGA CSC+SCA     XXXXXXXXX SS  VS              VRM+A             T +   H AS   P C                S  R +R ASS+TVM MG       GE   A RQRLV+EP+SV FEDTMAA+ +GFDY PKR
Sbjct:   46 MSSIAHGARCSCASCA---GVXXXXXXXXXXSSTGVSRRSCSAGCRCAGCSVRMKAHRDGED-------TTSPGGHRASCECPDC------------GVLKSLSRSRRGASSVTVMSMGG------GEGDRALRQRLVDEPESVQFEDTMAAIAEGFDYVPKR 180
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BLAST of mRNA_L-digitata_M_contig10174.1.1 vs. uniprot
Match: D8LKV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKV3_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 3.850e-8
Identity = 64/165 (38.79%), Postives = 80/165 (48.48%), Query Frame = 1 
Query:  157 VSTAS--HGAGCSCSSCAPRGAXXXXXXXXXXSSSAAVSGLXXXXXXXXXXXXVRMQAXXXXXXXXXXXTATAAGAFHGASXXXPACVSSAXXXXXXXXXXXXSGGRGKRAASSLTVMGMGAGQQEELGEAATAFRQRLVEEPQSVVFEDTMAAVTQGFDYSPKR 645
            VST+S  HGA CSC+SCA        XXXXXX SSA +SG             +RM+A             T +     A+   P C                S  R + AASS+ +M MG G+ E +       RQRL +EP+SV FEDTMAA+ +GFDY PKR
Sbjct:   44 VSTSSIAHGARCSCASCA---GVHGRXXXXXXXSSAGISGRSCSAGCRCTGCSMRMKAQRDRED-------TTSPVGQRATCQCPDC------------GVLKSRPRSRGAASSVMMMSMGGGEGEGV------LRQRLADEPESVQFEDTMAAIAEGFDYVPKR 180
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10174.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LEG1_9PHAE1.460e-1142.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKV3_ECTSI3.850e-838.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10174contigL-digitata_M_contig10174:798..1445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size648
Hectar predicted targeting categorychloroplast
Exons1
Cds size648
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406622.1648574-CDS-L-digitata_M_contig10174:797..14451682406622.1648574-CDS-L-digitata_M_contig10174:797..1445Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10174 798..1445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10174.1.1prot_L-digitata_M_contig10174.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10174 798..1445 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10174.1.1

>prot_L-digitata_M_contig10174.1.1 ID=prot_L-digitata_M_contig10174.1.1|Name=mRNA_L-digitata_M_contig10174.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=216bp
MKPTVVIGAAAIALVASGAEAFFMPAGAISGGAFSTSLSSSTSSLSMNGR
QRVSTASHGAGCSCSSCAPRGAHGRSCTCSSCSSSAAVSGLSHRSGCRCG
ACSVRMQAHPEGCGCGDCSTATAAGAFHGASCKCPACVSSAHSASCTCGA
CMASGGRGKRAASSLTVMGMGAGQQEELGEAATAFRQRLVEEPQSVVFED
TMAAVTQGFDYSPKR*
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mRNA from alignment at L-digitata_M_contig10174:798..1445-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10174.1.1 ID=mRNA_L-digitata_M_contig10174.1.1|Name=mRNA_L-digitata_M_contig10174.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=648bp|location=Sequence derived from alignment at L-digitata_M_contig10174:798..1445- (Laminaria digitata LdigPH10_18mv male)
ATGAAGCCCACGGTCGTGATCGGTGCCGCTGCGATCGCTCTCGTGGCGAG
CGGTGCCGAAGCGTTCTTCATGCCAGCCGGCGCGATCTCAGGTGGAGCGT
TTTCGACCTCTCTCTCGTCTTCCACCTCCTCTCTCTCGATGAACGGACGG
CAACGCGTAAGCACGGCCTCTCACGGGGCCGGGTGCTCCTGCTCCTCGTG
CGCACCGAGGGGTGCCCACGGGAGGTCGTGCACGTGCTCCTCTTGCTCCT
CCTCGGCGGCCGTCTCCGGGCTGTCCCACCGCTCCGGATGCCGCTGCGGC
GCCTGCTCCGTGCGCATGCAGGCGCACCCAGAGGGCTGCGGCTGCGGAGA
TTGCTCCACCGCAACCGCAGCGGGCGCGTTCCACGGGGCCTCGTGCAAGT
GCCCCGCGTGTGTCAGTTCCGCGCACAGCGCGTCCTGCACGTGCGGTGCC
TGCATGGCGAGCGGAGGGAGGGGGAAGCGGGCTGCCTCCTCGCTGACGGT
GATGGGCATGGGAGCCGGCCAGCAGGAGGAGCTCGGAGAGGCTGCCACCG
CATTCAGGCAACGGCTTGTGGAGGAGCCGCAGTCTGTGGTGTTTGAGGAC
ACCATGGCTGCTGTGACCCAAGGCTTCGACTACTCCCCGAAGAGGTAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig10174:798..1445-

>mRNA_L-digitata_M_contig10174.1.1 ID=mRNA_L-digitata_M_contig10174.1.1|Name=mRNA_L-digitata_M_contig10174.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=648bp|location=Sequence derived from alignment at L-digitata_M_contig10174:798..1445- (Laminaria digitata LdigPH10_18mv male)
ATGAAGCCCACGGTCGTGATCGGTGCCGCTGCGATCGCTCTCGTGGCGAG
CGGTGCCGAAGCGTTCTTCATGCCAGCCGGCGCGATCTCAGGTGGAGCGT
TTTCGACCTCTCTCTCGTCTTCCACCTCCTCTCTCTCGATGAACGGACGG
CAACGCGTAAGCACGGCCTCTCACGGGGCCGGGTGCTCCTGCTCCTCGTG
CGCACCGAGGGGTGCCCACGGGAGGTCGTGCACGTGCTCCTCTTGCTCCT
CCTCGGCGGCCGTCTCCGGGCTGTCCCACCGCTCCGGATGCCGCTGCGGC
GCCTGCTCCGTGCGCATGCAGGCGCACCCAGAGGGCTGCGGCTGCGGAGA
TTGCTCCACCGCAACCGCAGCGGGCGCGTTCCACGGGGCCTCGTGCAAGT
GCCCCGCGTGTGTCAGTTCCGCGCACAGCGCGTCCTGCACGTGCGGTGCC
TGCATGGCGAGCGGAGGGAGGGGGAAGCGGGCTGCCTCCTCGCTGACGGT
GATGGGCATGGGAGCCGGCCAGCAGGAGGAGCTCGGAGAGGCTGCCACCG
CATTCAGGCAACGGCTTGTGGAGGAGCCGCAGTCTGTGGTGTTTGAGGAC
ACCATGGCTGCTGTGACCCAAGGCTTCGACTACTCCCCGAAGAGGTAA
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