mRNA_L-digitata_M_contig101731.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101731.1.1
Unique NamemRNA_L-digitata_M_contig101731.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101731.1.1 vs. uniprot
Match: A0A6H5KYK6_9PHAE (Aldo_ket_red domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYK6_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.960e-18
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 1
Query:    1 LRYRQLGKSDLVVSKVCLGTMTWGEQNSDEEAFEQLDMAFDEFGVNFV 144
            + Y +LGKSDLVVSK CLGTMTWGEQNSDEEAFEQ +MAF EFGVNF+
Sbjct:   77 MEYSRLGKSDLVVSKACLGTMTWGEQNSDEEAFEQCNMAFHEFGVNFI 124          
BLAST of mRNA_L-digitata_M_contig101731.1.1 vs. uniprot
Match: A0A7S0HHP2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HHP2_9CRYP)

HSP 1 Score: 80.1 bits (196), Expect = 3.020e-18
Identity = 35/48 (72.92%), Postives = 44/48 (91.67%), Query Frame = 1
Query:    1 LRYRQLGKSDLVVSKVCLGTMTWGEQNSDEEAFEQLDMAFDEFGVNFV 144
            +RY +LG SDLVVS+VCLGTMTWG+QN++EEA +QL+ AFDEFGVNF+
Sbjct:   26 MRYNKLGDSDLVVSEVCLGTMTWGKQNTEEEAIKQLNTAFDEFGVNFI 73          
BLAST of mRNA_L-digitata_M_contig101731.1.1 vs. uniprot
Match: A0A836CJ26_9STRA (NADP-dependent oxidoreductase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ26_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 6.870e-18
Identity = 36/48 (75.00%), Postives = 45/48 (93.75%), Query Frame = 1
Query:    1 LRYRQLGKSDLVVSKVCLGTMTWGEQNSDEEAFEQLDMAFDEFGVNFV 144
            ++Y +LG SDLVVS+VCLGTMTWGEQN+DEEA+EQL +AFDEFG+NF+
Sbjct:   18 MKYVKLGSSDLVVSEVCLGTMTWGEQNTDEEAYEQLSVAFDEFGINFI 65          
BLAST of mRNA_L-digitata_M_contig101731.1.1 vs. uniprot
Match: A0A835Z0T2_9STRA (NADP-dependent oxidoreductase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0T2_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 7.740e-17
Identity = 35/48 (72.92%), Postives = 44/48 (91.67%), Query Frame = 1
Query:    1 LRYRQLGKSDLVVSKVCLGTMTWGEQNSDEEAFEQLDMAFDEFGVNFV 144
            ++Y +LG SDLVVS+VCLGTMTWGEQNSDEEA++QL +A DEFG+NF+
Sbjct:   53 MKYVKLGSSDLVVSEVCLGTMTWGEQNSDEEAYQQLKLAVDEFGINFI 100          
BLAST of mRNA_L-digitata_M_contig101731.1.1 vs. uniprot
Match: L1JG80_GUITC (Aldo_ket_red domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JG80_GUITC)

HSP 1 Score: 79.0 bits (193), Expect = 4.130e-16
Identity = 33/48 (68.75%), Postives = 44/48 (91.67%), Query Frame = 1
Query:    1 LRYRQLGKSDLVVSKVCLGTMTWGEQNSDEEAFEQLDMAFDEFGVNFV 144
            +RY +LG SDL+VS+VCLGTMTWG+QN++EEA +QL+ AFD+FGVNF+
Sbjct:    1 MRYNKLGDSDLIVSEVCLGTMTWGKQNTEEEAIQQLNTAFDDFGVNFI 48          
BLAST of mRNA_L-digitata_M_contig101731.1.1 vs. uniprot
Match: A0A7S1DYG4_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DYG4_HEMAN)

HSP 1 Score: 78.6 bits (192), Expect = 7.990e-16
Identity = 33/48 (68.75%), Postives = 44/48 (91.67%), Query Frame = 1
Query:    1 LRYRQLGKSDLVVSKVCLGTMTWGEQNSDEEAFEQLDMAFDEFGVNFV 144
            +RY +LG SDL+VS+VCLGTMTWG+QNS+E+A +QLD AFD++GVNF+
Sbjct:   80 MRYNKLGDSDLLVSEVCLGTMTWGKQNSEEQAMKQLDCAFDDYGVNFI 127          
BLAST of mRNA_L-digitata_M_contig101731.1.1 vs. uniprot
Match: A0A7S1TTW4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTW4_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.830e-15
Identity = 33/48 (68.75%), Postives = 42/48 (87.50%), Query Frame = 1
Query:    1 LRYRQLGKSDLVVSKVCLGTMTWGEQNSDEEAFEQLDMAFDEFGVNFV 144
            + YR+LG SDLVVS+VCLGTMTWGEQN++ EA  QL+ AF++FGVNF+
Sbjct:    1 MEYRRLGDSDLVVSEVCLGTMTWGEQNTEAEAHAQLNSAFNDFGVNFL 48          
BLAST of mRNA_L-digitata_M_contig101731.1.1 vs. uniprot
Match: A0PCZ1_GUITH (Aldo/keto reductase (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0PCZ1_GUITH)

HSP 1 Score: 72.4 bits (176), Expect = 7.960e-15
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 1
Query:    1 LRYRQLGKSDLVVSKVCLGTMTWGEQNSDEEAFEQLDMAFDEFGVNFV 144
            + Y +LG SDL VS+ CLGTMTWG+QN+ EE  EQL++AFDEFGVNF+
Sbjct:   51 MEYVKLGNSDLKVSRCCLGTMTWGQQNTMEEGVEQLNVAFDEFGVNFI 98          
BLAST of mRNA_L-digitata_M_contig101731.1.1 vs. uniprot
Match: A0A7S4EDL0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDL0_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.210e-14
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1
Query:    1 LRYRQLGKSDLVVSKVCLGTMTWGEQNSDEEAFEQLDMAFDEFGVNFV 144
            +R RQLG SDLVVS VCLGTMTWG+QN+ EE  +QLD AFDE+G+NF+
Sbjct:   28 IRRRQLGTSDLVVSDVCLGTMTWGKQNTLEEGVQQLDCAFDEYGLNFL 75          
BLAST of mRNA_L-digitata_M_contig101731.1.1 vs. uniprot
Match: A0A7S1GPK5_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GPK5_HEMAN)

HSP 1 Score: 74.3 bits (181), Expect = 2.410e-14
Identity = 31/48 (64.58%), Postives = 43/48 (89.58%), Query Frame = 1
Query:    1 LRYRQLGKSDLVVSKVCLGTMTWGEQNSDEEAFEQLDMAFDEFGVNFV 144
            +++ +LG SDLVVS+ CLGTMTWG+QN++EE  EQL++AFDE+GVNF+
Sbjct:   60 MKFSKLGDSDLVVSRCCLGTMTWGQQNTEEEGVEQLNVAFDEYGVNFL 107          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101731.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYK6_9PHAE1.960e-1881.25Aldo_ket_red domain-containing protein n=2 Tax=Ect... [more]
A0A7S0HHP2_9CRYP3.020e-1872.92Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A836CJ26_9STRA6.870e-1875.00NADP-dependent oxidoreductase domain-containing pr... [more]
A0A835Z0T2_9STRA7.740e-1772.92NADP-dependent oxidoreductase domain-containing pr... [more]
L1JG80_GUITC4.130e-1668.75Aldo_ket_red domain-containing protein n=1 Tax=Gui... [more]
A0A7S1DYG4_HEMAN7.990e-1668.75Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S1TTW4_9STRA1.830e-1568.75Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0PCZ1_GUITH7.960e-1566.67Aldo/keto reductase (Fragment) n=1 Tax=Guillardia ... [more]
A0A7S4EDL0_9STRA2.210e-1470.83Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1GPK5_HEMAN2.410e-1464.58Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101731contigL-digitata_M_contig101731:208..351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LAT8
PFAMsAldo_ket_red
Model size144
Max annot lvl2759|Eukaryota
KEGG koko:K09338,ko:K14521
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue6.7e-19
EggNOG OGsCOG0667@1|root,KOG1575@2759|Eukaryota
Descriptionoxidoreductase activity
Cds size144
COG categoryC
BRITEko00000,ko00001,ko01000,ko03000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406622.141529-CDS-L-digitata_M_contig101731:207..3511682406622.141529-CDS-L-digitata_M_contig101731:207..351Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101731 208..351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101731.1.1prot_L-digitata_M_contig101731.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101731 208..351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101731.1.1

>prot_L-digitata_M_contig101731.1.1 ID=prot_L-digitata_M_contig101731.1.1|Name=mRNA_L-digitata_M_contig101731.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=48bp
LRYRQLGKSDLVVSKVCLGTMTWGEQNSDEEAFEQLDMAFDEFGVNFV
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mRNA from alignment at L-digitata_M_contig101731:208..351+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101731.1.1 ID=mRNA_L-digitata_M_contig101731.1.1|Name=mRNA_L-digitata_M_contig101731.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=144bp|location=Sequence derived from alignment at L-digitata_M_contig101731:208..351+ (Laminaria digitata LdigPH10_18mv male)
TTAAGATACCGGCAATTGGGGAAGAGCGACTTGGTCGTTAGTAAGGTGTG CCTGGGGACGATGACGTGGGGGGAACAGAACTCGGACGAGGAGGCGTTCG AGCAGCTCGATATGGCGTTCGACGAGTTCGGCGTTAACTTCGTG
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Coding sequence (CDS) from alignment at L-digitata_M_contig101731:208..351+

>mRNA_L-digitata_M_contig101731.1.1 ID=mRNA_L-digitata_M_contig101731.1.1|Name=mRNA_L-digitata_M_contig101731.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=144bp|location=Sequence derived from alignment at L-digitata_M_contig101731:208..351+ (Laminaria digitata LdigPH10_18mv male)
TTAAGATACCGGCAATTGGGGAAGAGCGACTTGGTCGTTAGTAAGGTGTG
CCTGGGGACGATGACGTGGGGGGAACAGAACTCGGACGAGGAGGCGTTCG
AGCAGCTCGATATGGCGTTCGACGAGTTCGGCGTTAACTTCGTG
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