mRNA_L-digitata_M_contig101728.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101728.1.1
Unique NamemRNA_L-digitata_M_contig101728.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101728.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101728contigL-digitata_M_contig101728:2..892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog582402.Hbal_2425
Model size891
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.3e-14
EggNOG OGs2BGRE@1|root,32AQH@2|Bacteria,1PW42@1224|Proteobacteria,2V7AH@28211|Alphaproteobacteria,43ZG7@69657|Hyphomonadaceae
Cds size891
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406622.1180277-CDS-L-digitata_M_contig101728:1..8921682406622.1180277-CDS-L-digitata_M_contig101728:1..892Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101728 2..892 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101728.1.1prot_L-digitata_M_contig101728.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101728 2..892 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101728.1.1

>prot_L-digitata_M_contig101728.1.1 ID=prot_L-digitata_M_contig101728.1.1|Name=mRNA_L-digitata_M_contig101728.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=297bp
AAGGFLSVVLVASLVIWSFDLVRGTELDSDIARFEIDPSDRRLEVLIVGS
SHSAESIDDKRLEAALAKAGFPYAVRALTAGGFFAFDQDVMLDEYLSKTD
RIPIAVMIEVGTEYKIAIDPNKQNKAAGVRFIDMKRAGLGIVHLLNADWP
LATKIESIWSIIRHVIFKTVHTGFASQAVAWGEALPEKGFHEIVRPHPRF
TREFADRISAGDVIAQSKIAKIPNETLKWREDQKSNLPRKGVRHSIYFTP
PILNIRRRAFQKAICDRAPVLDCIDSTSADLMKELSFEHWYDDGHVL
back to top

mRNA from alignment at L-digitata_M_contig101728:2..892-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101728.1.1 ID=mRNA_L-digitata_M_contig101728.1.1|Name=mRNA_L-digitata_M_contig101728.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=891bp|location=Sequence derived from alignment at L-digitata_M_contig101728:2..892- (Laminaria digitata LdigPH10_18mv male)
GCAGCAGGCGGCTTTCTGAGCGTAGTGCTGGTGGCCAGTCTCGTGATCTG
GAGTTTTGATCTCGTTCGCGGCACGGAACTGGATTCGGACATTGCACGTT
TTGAGATAGACCCCTCCGACAGACGTCTTGAGGTCCTGATTGTCGGCTCC
AGCCACTCGGCTGAATCAATCGACGACAAACGACTGGAAGCCGCGCTGGC
AAAGGCAGGTTTTCCATACGCAGTTCGGGCTTTAACAGCCGGAGGGTTCT
TTGCCTTTGACCAGGACGTGATGCTCGACGAGTACCTAAGCAAGACAGAC
CGCATTCCGATTGCCGTCATGATCGAAGTGGGAACCGAATATAAAATTGC
GATTGACCCCAACAAACAGAACAAGGCGGCCGGTGTGCGTTTTATCGACA
TGAAACGCGCGGGTCTTGGGATTGTGCATCTGCTGAACGCCGACTGGCCC
CTCGCCACCAAGATAGAGAGTATCTGGAGCATTATCCGGCATGTCATATT
CAAGACAGTGCATACCGGTTTTGCCAGTCAGGCTGTGGCGTGGGGTGAAG
CCTTGCCCGAAAAGGGTTTCCACGAAATCGTTCGTCCCCACCCGCGGTTC
ACGCGCGAATTTGCCGATCGAATTTCGGCCGGAGATGTCATTGCTCAGTC
AAAGATCGCCAAGATTCCCAACGAAACCCTGAAATGGCGCGAAGATCAGA
AAAGCAATCTTCCCCGCAAGGGCGTCCGGCATTCGATCTATTTCACGCCG
CCAATTCTAAATATCCGGCGGCGCGCCTTCCAGAAAGCGATCTGTGACCG
TGCACCGGTACTGGACTGCATTGATTCCACCAGCGCCGATCTGATGAAAG
AACTTTCCTTCGAGCATTGGTATGACGACGGACATGTTCTT
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig101728:2..892-

>mRNA_L-digitata_M_contig101728.1.1 ID=mRNA_L-digitata_M_contig101728.1.1|Name=mRNA_L-digitata_M_contig101728.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=891bp|location=Sequence derived from alignment at L-digitata_M_contig101728:2..892- (Laminaria digitata LdigPH10_18mv male)
GCAGCAGGCGGCTTTCTGAGCGTAGTGCTGGTGGCCAGTCTCGTGATCTG
GAGTTTTGATCTCGTTCGCGGCACGGAACTGGATTCGGACATTGCACGTT
TTGAGATAGACCCCTCCGACAGACGTCTTGAGGTCCTGATTGTCGGCTCC
AGCCACTCGGCTGAATCAATCGACGACAAACGACTGGAAGCCGCGCTGGC
AAAGGCAGGTTTTCCATACGCAGTTCGGGCTTTAACAGCCGGAGGGTTCT
TTGCCTTTGACCAGGACGTGATGCTCGACGAGTACCTAAGCAAGACAGAC
CGCATTCCGATTGCCGTCATGATCGAAGTGGGAACCGAATATAAAATTGC
GATTGACCCCAACAAACAGAACAAGGCGGCCGGTGTGCGTTTTATCGACA
TGAAACGCGCGGGTCTTGGGATTGTGCATCTGCTGAACGCCGACTGGCCC
CTCGCCACCAAGATAGAGAGTATCTGGAGCATTATCCGGCATGTCATATT
CAAGACAGTGCATACCGGTTTTGCCAGTCAGGCTGTGGCGTGGGGTGAAG
CCTTGCCCGAAAAGGGTTTCCACGAAATCGTTCGTCCCCACCCGCGGTTC
ACGCGCGAATTTGCCGATCGAATTTCGGCCGGAGATGTCATTGCTCAGTC
AAAGATCGCCAAGATTCCCAACGAAACCCTGAAATGGCGCGAAGATCAGA
AAAGCAATCTTCCCCGCAAGGGCGTCCGGCATTCGATCTATTTCACGCCG
CCAATTCTAAATATCCGGCGGCGCGCCTTCCAGAAAGCGATCTGTGACCG
TGCACCGGTACTGGACTGCATTGATTCCACCAGCGCCGATCTGATGAAAG
AACTTTCCTTCGAGCATTGGTATGACGACGGACATGTTCTT
back to top