mRNA_L-digitata_M_contig101701.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101701.1.1
Unique NamemRNA_L-digitata_M_contig101701.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101701.1.1 vs. uniprot
Match: A0A3D4UNF6_9BACT (Uncharacterized protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A3D4UNF6_9BACT)

HSP 1 Score: 233 bits (595), Expect = 2.020e-67
Identity = 142/328 (43.29%), Postives = 187/328 (57.01%), Query Frame = 1 
Query:    1 HNVLFDWLATIGLGGLALISFVVRPLAGIRSGNTKPNMEEDAPARSVIDRETKMALVLIMFPVLISMRMQSAVMDPSQFGPFFACLGLWIVCAMVFIRAGLSASLIH--------------------PXXXXAPLWALMLGLACSGRAEPHRNRIQLLAPVL-MLVVAALLMLQWGSINAWERSLHRAADDAVGVAQVRSALDAMEFSADPAGDLAFSQERLSSMLGRPVGMDLDSIIPALNQAEVDARMRSIERLGQALQARPSHTPTRVALSQQMLWIGSVARSSGQVQMADAMWDDAYGLIADDNLQDAGGHRWAGNILWGRAMA 921
            H+VL  W+AT+GLGG+A+   ++R L G+ +       +E        DR  K AL+L+  P L++M+MQ+ V+             LW   ++  IR+G+  + I                          APL AL +G+AC+   +  R     L   L +L VA +L+ +WG INAWER+LH AA  A G+AQVRSA+D +EFS+ P  +L      L  ++GRPV   LDSII  LNQAEVDAR  SIERL  AL ARPSHTPTR++LSQQ+LW+ SVA+SSGQ   + A WD A GL    +L DA GHRWAGNI  GR  A
Sbjct:  359 HSVLISWIATLGLGGIAISGLLLRSLLGL-TDQRDAQADEGGHGSQARDRNMKFALLLVALPTLMAMQMQTGVLTLQGMLALLGGAVLWGGLSITIIRSGIPDASIRRGLLVAAVVFTLHAMLEVTGTLIVSAPLSALSIGIACNLPGQSGRKPRAALPGFLGILAVAMVLLARWGPINAWERALHGAAAQATGIAQVRSAVDELEFSSAPQRELYTISSMLQDLVGRPVSASLDSIITTLNQAEVDARFTSIERLQMALDARPSHTPTRISLSQQLLWLASVAQSSGQNDRSVAFWDQAAGLFEGIDL-DAQGHRWAGNIWSGRVSA 684
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BLAST of mRNA_L-digitata_M_contig101701.1.1 vs. uniprot
Match: A0A3M2BBT0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2BBT0_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 1.640e-5
Identity = 76/278 (27.34%), Postives = 121/278 (43.53%), Query Frame = 1 
Query:    1 HNVLFDWLATIGLGG---LALISFVVRPLAG-IRSGNTKPNMEEDAPARSVIDRETKMALVLIMFPVLISMRMQSAVMDPSQ--FGPFFACLGLWIVCAMV--------FIR----AGLSASLIHPXXXXA-------PLWALMLGLACS--GRAEPHRNRIQLLAPVLMLVVAALLMLQWGSINAWERSLHRAADDAVGVAQVRSALDAMEFSADPAGDLAFSQERLSSMLGRPVGMDLDSIIPALNQAEVDARMRSIERLGQALQARPSHTPTRVA 753
            H++ FD L+T+GL G   + L +   R +AG +R+  T     E++PAR        +A   I F + +S   + +++ P           LGL I   ++         +R    AG    L H             P+ A ++ LAC+   RA   R+     A    L VAA  +L   + + W  +L RA D    V +  S LD  E   + A  LA + +R++ + G     +   +  A+  A   A + ++  L +AL+ARPSH PTR A
Sbjct:  344 HSIFFDLLSTLGLVGGAWILLFACACRSIAGRVRTAETS----EESPARPFDRPAMLLAAASIGFAIGLSAYFERSLLTPEMGIVRALGLVLGLAIAAGVIQAPRQSAHIVRLAAVAGALVILAHTQIEVTLVSAGAGPMAATIIALACAPPARARCTRSNSGGAALFAGLAVAAGSLLLPSTFH-WSAALTRATDAVRPVGEAISTLD--EAPPNSAKMLA-ALDRIARLAGTATPRNASELEAAIAHARTRAALAALPELERALEARPSHLPTRQA 613
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101701.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A3D4UNF6_9BACT2.020e-6743.29Uncharacterized protein n=2 Tax=Phycisphaerae TaxI... [more]
A0A3M2BBT0_9BACT1.640e-527.34Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101701contigL-digitata_M_contig101701:3..923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size921
Exons1
Cds size921
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406622.0438087-CDS-L-digitata_M_contig101701:2..9231682406622.0438087-CDS-L-digitata_M_contig101701:2..923Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101701 3..923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101701.1.1prot_L-digitata_M_contig101701.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101701 3..923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101701.1.1

>prot_L-digitata_M_contig101701.1.1 ID=prot_L-digitata_M_contig101701.1.1|Name=mRNA_L-digitata_M_contig101701.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=307bp
HNVLFDWLATIGLGGLALISFVVRPLAGIRSGNTKPNMEEDAPARSVIDR
ETKMALVLIMFPVLISMRMQSAVMDPSQFGPFFACLGLWIVCAMVFIRAG
LSASLIHPXXXXAPLWALMLGLACSGRAEPHRNRIQLLAPVLMLVVAALL
MLQWGSINAWERSLHRAADDAVGVAQVRSALDAMEFSADPAGDLAFSQER
LSSMLGRPVGMDLDSIIPALNQAEVDARMRSIERLGQALQARPSHTPTRV
ALSQQMLWIGSVARSSGQVQMADAMWDDAYGLIADDNLQDAGGHRWAGNI
LWGRAMA
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mRNA from alignment at L-digitata_M_contig101701:3..923+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101701.1.1 ID=mRNA_L-digitata_M_contig101701.1.1|Name=mRNA_L-digitata_M_contig101701.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=921bp|location=Sequence derived from alignment at L-digitata_M_contig101701:3..923+ (Laminaria digitata LdigPH10_18mv male)
CACAATGTGCTGTTTGACTGGCTGGCCACGATTGGCCTTGGCGGGCTTGC
CCTGATCAGCTTTGTCGTTCGTCCGCTGGCTGGGATTCGCTCCGGGAATA
CGAAGCCCAACATGGAGGAGGATGCCCCCGCTCGATCGGTGATCGATCGA
GAAACCAAAATGGCTTTGGTGCTGATCATGTTCCCGGTACTGATCTCGAT
GCGGATGCAATCGGCGGTGATGGATCCATCGCAGTTCGGGCCGTTCTTTG
CGTGCTTGGGGTTATGGATTGTGTGCGCCATGGTGTTCATCCGAGCAGGG
CTCAGCGCATCGCTGATCCACCCTNNNNNNNNNNCGGCACCGCTGTGGGC
GTTGATGCTGGGCTTGGCGTGCAGTGGGCGAGCCGAGCCACACCGCAATC
GGATCCAGTTGCTTGCGCCGGTGCTCATGCTGGTCGTGGCGGCGCTGCTG
ATGCTCCAGTGGGGCTCGATCAATGCATGGGAGCGTTCGCTGCACCGGGC
AGCGGACGACGCAGTGGGCGTAGCCCAGGTCCGCAGCGCCCTCGATGCGA
TGGAGTTCAGCGCCGACCCGGCGGGTGACCTTGCGTTTTCCCAGGAACGC
CTGAGCAGCATGCTGGGACGTCCGGTCGGTATGGATCTAGATTCGATCAT
CCCAGCGTTGAATCAGGCGGAGGTCGATGCCCGCATGAGGAGCATCGAGC
GGCTTGGACAGGCGCTGCAGGCACGCCCCTCGCACACCCCGACTCGAGTT
GCCTTGTCGCAGCAGATGCTTTGGATCGGCTCTGTGGCCCGGAGTTCCGG
GCAGGTTCAGATGGCCGATGCGATGTGGGATGACGCCTATGGGCTCATTG
CGGATGACAATCTGCAGGATGCGGGCGGGCATCGCTGGGCGGGGAACATC
CTCTGGGGGCGAGCGATGGCA
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Coding sequence (CDS) from alignment at L-digitata_M_contig101701:3..923+

>mRNA_L-digitata_M_contig101701.1.1 ID=mRNA_L-digitata_M_contig101701.1.1|Name=mRNA_L-digitata_M_contig101701.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=921bp|location=Sequence derived from alignment at L-digitata_M_contig101701:3..923+ (Laminaria digitata LdigPH10_18mv male)
CACAATGTGCTGTTTGACTGGCTGGCCACGATTGGCCTTGGCGGGCTTGC
CCTGATCAGCTTTGTCGTTCGTCCGCTGGCTGGGATTCGCTCCGGGAATA
CGAAGCCCAACATGGAGGAGGATGCCCCCGCTCGATCGGTGATCGATCGA
GAAACCAAAATGGCTTTGGTGCTGATCATGTTCCCGGTACTGATCTCGAT
GCGGATGCAATCGGCGGTGATGGATCCATCGCAGTTCGGGCCGTTCTTTG
CGTGCTTGGGGTTATGGATTGTGTGCGCCATGGTGTTCATCCGAGCAGGG
CTCAGCGCATCGCTGATCCACCCTNNNNNNNNNNCGGCACCGCTGTGGGC
GTTGATGCTGGGCTTGGCGTGCAGTGGGCGAGCCGAGCCACACCGCAATC
GGATCCAGTTGCTTGCGCCGGTGCTCATGCTGGTCGTGGCGGCGCTGCTG
ATGCTCCAGTGGGGCTCGATCAATGCATGGGAGCGTTCGCTGCACCGGGC
AGCGGACGACGCAGTGGGCGTAGCCCAGGTCCGCAGCGCCCTCGATGCGA
TGGAGTTCAGCGCCGACCCGGCGGGTGACCTTGCGTTTTCCCAGGAACGC
CTGAGCAGCATGCTGGGACGTCCGGTCGGTATGGATCTAGATTCGATCAT
CCCAGCGTTGAATCAGGCGGAGGTCGATGCCCGCATGAGGAGCATCGAGC
GGCTTGGACAGGCGCTGCAGGCACGCCCCTCGCACACCCCGACTCGAGTT
GCCTTGTCGCAGCAGATGCTTTGGATCGGCTCTGTGGCCCGGAGTTCCGG
GCAGGTTCAGATGGCCGATGCGATGTGGGATGACGCCTATGGGCTCATTG
CGGATGACAATCTGCAGGATGCGGGCGGGCATCGCTGGGCGGGGAACATC
CTCTGGGGGCGAGCGATGGCA
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