mRNA_L-digitata_M_contig101699.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101699.1.1
Unique NamemRNA_L-digitata_M_contig101699.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101699.1.1 vs. uniprot
Match: A0A2D7FMI3_9PROT (Sec-independent protein translocase protein TatA n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FMI3_9PROT)

HSP 1 Score: 132 bits (331), Expect = 1.280e-38
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 1
Query:    1 MGTFSIWHWVIVLVVVLVLFGGGGKLSRIMGDAARGINAFKKGLKEDKTDGDAAAAPDKSLKSDSGDAVAEGVKKDEAAK 240
            MGTFSIWHWVIVLVVVLVLFGGGGKLSRIMGDAARGINAFKKGL+E+K +GDAAA PDKSLKSDS DA  + VKKDEAAK
Sbjct:    1 MGTFSIWHWVIVLVVVLVLFGGGGKLSRIMGDAARGINAFKKGLREEKPEGDAAATPDKSLKSDSEDAAIDAVKKDEAAK 80          
BLAST of mRNA_L-digitata_M_contig101699.1.1 vs. uniprot
Match: A0A2D8PQF8_9PROT (Sec-independent protein translocase protein TatA n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PQF8_9PROT)

HSP 1 Score: 127 bits (318), Expect = 1.230e-36
Identity = 65/81 (80.25%), Postives = 72/81 (88.89%), Query Frame = 1
Query:    1 MGTFSIWHWVIVLVVVLVLFGGGGKLSRIMGDAARGINAFKKGLKEDKTDGDAAAAPDKSLKSDSGDAVAEGVKKDEAAKS 243
            MG FSIWHW+IVLVVVLVLFGGGGKLSR+MGDAARGINAFKKGLKEDK+DGD   APDK+L +D+GD  +E  KKDEAAKS
Sbjct:    1 MGAFSIWHWIIVLVVVLVLFGGGGKLSRLMGDAARGINAFKKGLKEDKSDGDPTTAPDKALNADTGDTASEAGKKDEAAKS 81          
BLAST of mRNA_L-digitata_M_contig101699.1.1 vs. uniprot
Match: A0A6N7FCQ3_9PROT (Sec-independent protein translocase protein TatA n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7FCQ3_9PROT)

HSP 1 Score: 101 bits (252), Expect = 1.350e-26
Identity = 54/80 (67.50%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 MGTFSIWHWVIVLVVVLVLFGGGGKLSRIMGDAARGINAFKKGLKEDKTDGDAAAAPDKSLKSDSGDAVAEGVKKDEAAK 240
            MGTFSIWHW++VLVVVL+LFGGGGKLSR+MGD A+G+NAFKKGLK+   DG+ AA P + L SD   A  E  KKDEA K
Sbjct:    1 MGTFSIWHWLVVLVVVLILFGGGGKLSRLMGDMAKGVNAFKKGLKD--KDGEDAADPQQKLDSDRAAATGEAPKKDEAVK 78          
BLAST of mRNA_L-digitata_M_contig101699.1.1 vs. uniprot
Match: A0A2E7QW55_9PROT (Sec-independent protein translocase protein TatA n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7QW55_9PROT)

HSP 1 Score: 92.4 bits (228), Expect = 6.280e-23
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 1
Query:    1 MGTFSIWHWVIVLVVVLVLFGGGGKLSRIMGDAARGINAFKKGLKEDKTD 150
            MGTFSIWHWVIVLVVVLVLFGGGGKLSR+MGDAARGI AFK+GLK+D +D
Sbjct:    1 MGTFSIWHWVIVLVVVLVLFGGGGKLSRLMGDAARGITAFKRGLKDDSSD 50          
BLAST of mRNA_L-digitata_M_contig101699.1.1 vs. uniprot
Match: A0A7Z9VH04_9PROT (Sec-independent protein translocase protein TatA n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A7Z9VH04_9PROT)

HSP 1 Score: 91.7 bits (226), Expect = 1.300e-22
Identity = 48/80 (60.00%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    1 MGTFSIWHWVIVLVVVLVLFGGGGKLSRIMGDAARGINAFKKGLKEDKTDGDAAAAPDKSLKSDSGDAVAEGVKKDEAAK 240
            MGTFSIWHW+IVL VVLVLFGGGGK+SR+MGD  +G+ +FKKG+KE++ +G       K+LKS+  + V    KKDEAAK
Sbjct:    1 MGTFSIWHWLIVLAVVLVLFGGGGKISRLMGDFGKGLKSFKKGMKEEEGEGAVTEDDVKTLKSEQTETVQPEEKKDEAAK 80          
BLAST of mRNA_L-digitata_M_contig101699.1.1 vs. uniprot
Match: A0A2E6GN04_9PROT (Sec-independent protein translocase protein TatA n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6GN04_9PROT)

HSP 1 Score: 91.3 bits (225), Expect = 1.750e-22
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    1 MGTFSIWHWVIVLVVVLVLFGGGGKLSRIMGDAARGINAFKKGLKEDKTDGDAAAAPDKSLKSDSGDAVAEGVKKDEAAK 240
            MGTFSIWHW++VLVVVLVLFGGGGKL+R+MGDAARGINAFKKGLK+  T  D  A   K++  ++ +  A    KDE AK
Sbjct:    1 MGTFSIWHWLVVLVVVLVLFGGGGKLTRLMGDAARGINAFKKGLKD--TGSDEKADEPKTIDVEAKEPSANTSSKDETAK 78          
BLAST of mRNA_L-digitata_M_contig101699.1.1 vs. uniprot
Match: UPI00037514A0 (twin-arginine translocase TatA/TatE family subunit n=1 Tax=Kiloniella laminariae TaxID=454162 RepID=UPI00037514A0)

HSP 1 Score: 89.7 bits (221), Expect = 5.580e-22
Identity = 49/70 (70.00%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    1 MGTFSIWHWVIVLVVVLVLFGGGGKLSRIMGDAARGINAFKKGLKEDKTDGDA-AAAPDKSLKSDSGDAV 207
            MGTFSIWHW+IVLVVVLVLFGGGGKLS++MGDA  GI AFKKGLK++K+D  A AAA +K   S+  D V
Sbjct:    1 MGTFSIWHWLIVLVVVLVLFGGGGKLSKLMGDAGSGIKAFKKGLKDEKSDPSADAAAEEKKTISEEKDKV 70          
BLAST of mRNA_L-digitata_M_contig101699.1.1 vs. uniprot
Match: A0A545TQ26_9PROT (Sec-independent protein translocase protein TatA n=1 Tax=Denitrobaculum tricleocarpae TaxID=2591009 RepID=A0A545TQ26_9PROT)

HSP 1 Score: 88.2 bits (217), Expect = 2.970e-21
Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 MGTFSIWHWVIVLVVVLVLFGGGGKLSRIMGDAARGINAFKKGLKED-KTDGDAAAAPDKSLKSDSGDAVAEGVKKDEAA 237
            MG FSIWHW+IVLVVVLVLFGGGGKLS++MGDA  GI AFKKGLKE+ K D D  A  +K+++ +S +A +   +KD+AA
Sbjct:    1 MGAFSIWHWLIVLVVVLVLFGGGGKLSKLMGDAGSGIKAFKKGLKEEGKKDDDTTA--EKAIEGESTEAASTVAEKDKAA 78          
BLAST of mRNA_L-digitata_M_contig101699.1.1 vs. uniprot
Match: A0A2E5V2V6_9PROT (Sec-independent protein translocase protein TatA n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5V2V6_9PROT)

HSP 1 Score: 85.5 bits (210), Expect = 3.280e-20
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 1
Query:    1 MGTFSIWHWVIVLVVVLVLFGGGGKLSRIMGDAARGINAFKKGLKEDKTD 150
            MGTFSIWHW+IVLVVVLVLFGG GKLS +MGDAARGI AFKKGLK++  D
Sbjct:    1 MGTFSIWHWIIVLVVVLVLFGGRGKLSSLMGDAARGITAFKKGLKDEPAD 50          
BLAST of mRNA_L-digitata_M_contig101699.1.1 vs. uniprot
Match: A0A1G3IC04_9PROT (Sec-independent protein translocase protein TatA n=1 Tax=Rhodospirillales bacterium RIFCSPLOWO2_12_FULL_58_28 TaxID=1802022 RepID=A0A1G3IC04_9PROT)

HSP 1 Score: 85.5 bits (210), Expect = 3.750e-20
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 MGTFSIWHWVIVLVVVLVLFGGGGKLSRIMGDAARGINAFKKGLKEDKTDGDAAAAPDKSLKSDSGDA 204
            MG+FSIWHWVIVLVVVLVLFGGGGK+SRIMGD  +G+ +FKKG+KED+ D        KSL+++S  A
Sbjct:    1 MGSFSIWHWVIVLVVVLVLFGGGGKISRIMGDFGKGLKSFKKGMKEDEEDVTEPLRERKSLEAESSSA 68          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101699.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7FMI3_9PROT1.280e-3887.50Sec-independent protein translocase protein TatA n... [more]
A0A2D8PQF8_9PROT1.230e-3680.25Sec-independent protein translocase protein TatA n... [more]
A0A6N7FCQ3_9PROT1.350e-2667.50Sec-independent protein translocase protein TatA n... [more]
A0A2E7QW55_9PROT6.280e-2388.00Sec-independent protein translocase protein TatA n... [more]
A0A7Z9VH04_9PROT1.300e-2260.00Sec-independent protein translocase protein TatA n... [more]
A0A2E6GN04_9PROT1.750e-2263.75Sec-independent protein translocase protein TatA n... [more]
UPI00037514A05.580e-2270.00twin-arginine translocase TatA/TatE family subunit... [more]
A0A545TQ26_9PROT2.970e-2162.50Sec-independent protein translocase protein TatA n... [more]
A0A2E5V2V6_9PROT3.280e-2082.00Sec-independent protein translocase protein TatA n... [more]
A0A1G3IC04_9PROT3.750e-2064.71Sec-independent protein translocase protein TatA n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101699contigL-digitata_M_contig101699:76..321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1122135.KB893136_gene493
Preferred nametatA
PFAMsMttA_Hcf106
Model size246
Max annot lvl2|Bacteria
KEGG koko:K03116,ko:K03425
KEGG TC2.A.64
KEGG Pathwayko03060,ko03070,map03060,map03070
KEGG ModuleM00336
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005215
Exons1
Evalue9.15e-23
EggNOG OGsCOG1826@1|root,COG1826@2|Bacteria
Descriptionprotein secretion
Cds size246
COG categoryU
BRITEko00000,ko00001,ko00002,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406621.8447485-CDS-L-digitata_M_contig101699:75..3211682406621.8447485-CDS-L-digitata_M_contig101699:75..321Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101699 76..321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101699.1.1prot_L-digitata_M_contig101699.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101699 76..321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101699.1.1

>prot_L-digitata_M_contig101699.1.1 ID=prot_L-digitata_M_contig101699.1.1|Name=mRNA_L-digitata_M_contig101699.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=82bp
MGTFSIWHWVIVLVVVLVLFGGGGKLSRIMGDAARGINAFKKGLKEDKTD
GDAAAAPDKSLKSDSGDAVAEGVKKDEAAKS*
back to top

mRNA from alignment at L-digitata_M_contig101699:76..321+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101699.1.1 ID=mRNA_L-digitata_M_contig101699.1.1|Name=mRNA_L-digitata_M_contig101699.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=246bp|location=Sequence derived from alignment at L-digitata_M_contig101699:76..321+ (Laminaria digitata LdigPH10_18mv male)
ATGGGGACCTTCAGTATTTGGCACTGGGTTATCGTTTTGGTCGTCGTGCT CGTACTTTTCGGCGGTGGCGGCAAACTCTCCCGTATCATGGGTGACGCCG CCCGGGGCATAAACGCCTTCAAAAAAGGCCTGAAAGAAGACAAGACGGAC GGCGATGCTGCGGCGGCGCCGGACAAGTCGCTGAAATCGGATAGCGGCGA TGCCGTTGCCGAGGGTGTCAAGAAAGACGAAGCCGCGAAAAGCTAG
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig101699:76..321+

>mRNA_L-digitata_M_contig101699.1.1 ID=mRNA_L-digitata_M_contig101699.1.1|Name=mRNA_L-digitata_M_contig101699.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=246bp|location=Sequence derived from alignment at L-digitata_M_contig101699:76..321+ (Laminaria digitata LdigPH10_18mv male)
ATGGGGACCTTCAGTATTTGGCACTGGGTTATCGTTTTGGTCGTCGTGCT
CGTACTTTTCGGCGGTGGCGGCAAACTCTCCCGTATCATGGGTGACGCCG
CCCGGGGCATAAACGCCTTCAAAAAAGGCCTGAAAGAAGACAAGACGGAC
GGCGATGCTGCGGCGGCGCCGGACAAGTCGCTGAAATCGGATAGCGGCGA
TGCCGTTGCCGAGGGTGTCAAGAAAGACGAAGCCGCGAAAAGCTAG
back to top