mRNA_L-digitata_M_contig101698.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101698.2.1
Unique NamemRNA_L-digitata_M_contig101698.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101698.2.1 vs. uniprot
Match: A0A160U0P6_9ZZZZ (Lipid A biosynthesis lauroyl acyltransferase n=7 Tax=root TaxID=1 RepID=A0A160U0P6_9ZZZZ)

HSP 1 Score: 84.0 bits (206), Expect = 2.530e-18
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:    1 RITDFIEEQVRANPDQWFWQHRRWPKEAWKAAGIT 105
            RITDFIEEQVRANPDQWFWQHRRWPKEAWKAAGIT
Sbjct:  285 RITDFIEEQVRANPDQWFWQHRRWPKEAWKAAGIT 319
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BLAST of mRNA_L-digitata_M_contig101698.2.1 vs. uniprot
Match: A0A2E3AUP8_9PROT (Lipid A biosynthesis acyltransferase n=1 Tax=Hyphomonadaceae bacterium TaxID=2026748 RepID=A0A2E3AUP8_9PROT)

HSP 1 Score: 78.6 bits (192), Expect = 2.560e-16
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 RITDFIEEQVRANPDQWFWQHRRWPKEAWKAAGIT 105
            RITDFIEEQ+RANP QWFWQHRRWPK AWKAAGIT
Sbjct:  285 RITDFIEEQIRANPGQWFWQHRRWPKXAWKAAGIT 319
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BLAST of mRNA_L-digitata_M_contig101698.2.1 vs. uniprot
Match: A0A059E7T5_9PROT (Uncharacterized protein n=4 Tax=Hyphomonas TaxID=85 RepID=A0A059E7T5_9PROT)

HSP 1 Score: 76.6 bits (187), Expect = 1.320e-15
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 RITDFIEEQVRANPDQWFWQHRRWPKEAWKAAGI 102
            RITDFIE QVRANP QWFWQHRRWPKEAWKAAGI
Sbjct:  285 RITDFIEAQVRANPGQWFWQHRRWPKEAWKAAGI 318
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BLAST of mRNA_L-digitata_M_contig101698.2.1 vs. uniprot
Match: A0A258BPT9_9PROT (Lipid A biosynthesis acyltransferase n=1 Tax=Hyphomonas sp. 32-62-5 TaxID=1970391 RepID=A0A258BPT9_9PROT)

HSP 1 Score: 73.2 bits (178), Expect = 2.520e-14
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    1 RITDFIEEQVRANPDQWFWQHRRWPKEAWKAAGIT 105
            RITDFIE QVRA+P QWFWQHRRWPKEAWK AGI 
Sbjct:  286 RITDFIEAQVRAHPGQWFWQHRRWPKEAWKEAGIV 320
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BLAST of mRNA_L-digitata_M_contig101698.2.1 vs. uniprot
Match: UPI000A074E82 (lysophospholipid acyltransferase family protein n=1 Tax=Henriciella litoralis TaxID=568102 RepID=UPI000A074E82)

HSP 1 Score: 72.0 bits (175), Expect = 6.640e-14
Identity = 27/34 (79.41%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 RITDFIEEQVRANPDQWFWQHRRWPKEAWKAAGI 102
            +IT+F+E QVRANP+QWFWQHRRWPK AWKAAG+
Sbjct:  286 KITEFLEAQVRANPEQWFWQHRRWPKSAWKAAGV 319
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BLAST of mRNA_L-digitata_M_contig101698.2.1 vs. uniprot
Match: UPI000A054A1A (lysophospholipid acyltransferase family protein n=1 Tax=Henriciella pelagia TaxID=1977912 RepID=UPI000A054A1A)

HSP 1 Score: 71.6 bits (174), Expect = 9.070e-14
Identity = 27/34 (79.41%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 RITDFIEEQVRANPDQWFWQHRRWPKEAWKAAGI 102
            +IT+FIE +VRANP+QWFWQHRRWPK AWKAAG+
Sbjct:  284 KITEFIEAEVRANPEQWFWQHRRWPKSAWKAAGV 317
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BLAST of mRNA_L-digitata_M_contig101698.2.1 vs. uniprot
Match: UPI0008DB11D1 (lysophospholipid acyltransferase family protein n=1 Tax=Hyphomonas sp. Mor2 TaxID=1906738 RepID=UPI0008DB11D1)

HSP 1 Score: 70.9 bits (172), Expect = 1.760e-13
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 RITDFIEEQVRANPDQWFWQHRRWPKEAWKAAGIT 105
            RI+ F+EE+VR NP QWFWQHRRWPK+AWK+AGIT
Sbjct:  285 RISAFVEEEVRRNPGQWFWQHRRWPKDAWKSAGIT 319
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BLAST of mRNA_L-digitata_M_contig101698.2.1 vs. uniprot
Match: A0A059G108_9PROT (Lipid A biosynthesis acyltransferase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A059G108_9PROT)

HSP 1 Score: 70.5 bits (171), Expect = 2.520e-13
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 RITDFIEEQVRANPDQWFWQHRRWPKEAWKAAGIT 105
            RIT FIE+QVRA+P QWFWQHRRWPKEAW+ AGI+
Sbjct:  291 RITAFIEDQVRAHPGQWFWQHRRWPKEAWREAGIS 325
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BLAST of mRNA_L-digitata_M_contig101698.2.1 vs. uniprot
Match: UPI00035DEBE2 (lysophospholipid acyltransferase family protein n=1 Tax=Henriciella marina TaxID=453851 RepID=UPI00035DEBE2)

HSP 1 Score: 69.7 bits (169), Expect = 4.650e-13
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 RITDFIEEQVRANPDQWFWQHRRWPKEAWKAAGI 102
            +IT FIE QVRANP+QWFWQHRRWPK AWK AG+
Sbjct:  286 KITRFIEHQVRANPEQWFWQHRRWPKSAWKKAGV 319
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BLAST of mRNA_L-digitata_M_contig101698.2.1 vs. uniprot
Match: A0A062VP42_9PROT (Lipid A biosynthesis acyltransferase n=3 Tax=Hyphomonas TaxID=85 RepID=A0A062VP42_9PROT)

HSP 1 Score: 69.3 bits (168), Expect = 6.470e-13
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 RITDFIEEQVRANPDQWFWQHRRWPKEAWKAAGI 102
            RIT FIE QVRA+P QWFWQHRRWPKEAWK AG+
Sbjct:  286 RITAFIEAQVRAHPGQWFWQHRRWPKEAWKEAGV 319
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101698.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A160U0P6_9ZZZZ2.530e-18100.00Lipid A biosynthesis lauroyl acyltransferase n=7 T... [more]
A0A2E3AUP8_9PROT2.560e-1691.43Lipid A biosynthesis acyltransferase n=1 Tax=Hypho... [more]
A0A059E7T5_9PROT1.320e-1594.12Uncharacterized protein n=4 Tax=Hyphomonas TaxID=8... [more]
A0A258BPT9_9PROT2.520e-1485.71Lipid A biosynthesis acyltransferase n=1 Tax=Hypho... [more]
UPI000A074E826.640e-1479.41lysophospholipid acyltransferase family protein n=... [more]
UPI000A054A1A9.070e-1479.41lysophospholipid acyltransferase family protein n=... [more]
UPI0008DB11D11.760e-1377.14lysophospholipid acyltransferase family protein n=... [more]
A0A059G108_9PROT2.520e-1380.00Lipid A biosynthesis acyltransferase n=3 Tax=Alpha... [more]
UPI00035DEBE24.650e-1379.41lysophospholipid acyltransferase family protein n=... [more]
A0A062VP42_9PROT6.470e-1382.35Lipid A biosynthesis acyltransferase n=3 Tax=Hypho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101698contigL-digitata_M_contig101698:815..922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1207058.L53_05805
Preferred namemsbB
PFAMsLip_A_acyltrans
Model size108
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00037,RC00039
KEGG koko:K02517
KEGG ReactionR05146
KEGG Pathwayko00540,ko01100,map00540,map01100
KEGG ModuleM00060
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue3.02e-17
EggNOG OGsCOG1560@1|root,COG1560@2|Bacteria,1MVNI@1224|Proteobacteria,2TS2H@28211|Alphaproteobacteria,43WBC@69657|Hyphomonadaceae
EC2.3.1.241
DescriptionCOG1560 Lauroyl myristoyl acyltransferase
Cds size108
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000,ko01005
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406621.8072758-CDS-L-digitata_M_contig101698:814..9221682406621.8072758-CDS-L-digitata_M_contig101698:814..922Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101698 815..922 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101698.2.1prot_L-digitata_M_contig101698.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101698 815..922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101698.2.1

>prot_L-digitata_M_contig101698.2.1 ID=prot_L-digitata_M_contig101698.2.1|Name=mRNA_L-digitata_M_contig101698.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=36bp
RITDFIEEQVRANPDQWFWQHRRWPKEAWKAAGIT*
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mRNA from alignment at L-digitata_M_contig101698:815..922-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101698.2.1 ID=mRNA_L-digitata_M_contig101698.2.1|Name=mRNA_L-digitata_M_contig101698.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=108bp|location=Sequence derived from alignment at L-digitata_M_contig101698:815..922- (Laminaria digitata LdigPH10_18mv male)
CGTATTACGGATTTCATTGAAGAACAGGTCCGCGCAAATCCGGACCAATG
GTTCTGGCAGCATCGCCGCTGGCCCAAGGAGGCCTGGAAGGCCGCCGGCA
TCACCTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig101698:815..922-

>mRNA_L-digitata_M_contig101698.2.1 ID=mRNA_L-digitata_M_contig101698.2.1|Name=mRNA_L-digitata_M_contig101698.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=108bp|location=Sequence derived from alignment at L-digitata_M_contig101698:815..922- (Laminaria digitata LdigPH10_18mv male)
CGTATTACGGATTTCATTGAAGAACAGGTCCGCGCAAATCCGGACCAATG
GTTCTGGCAGCATCGCCGCTGGCCCAAGGAGGCCTGGAAGGCCGCCGGCA
TCACCTGA
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