mRNA_L-digitata_M_contig101679.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101679.1.1
Unique NamemRNA_L-digitata_M_contig101679.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101679.1.1 vs. uniprot
Match: A0A6H5JLY0_9PHAE (Aminotran_5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLY0_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 3.630e-22
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 1
Query:    4 IGSFSAASNVTGGLEDVDKVTATLHRAGALALWDYATAAPYVRMDMNPVASGTDD 168
            IG+FSAASNVTG LEDVDKVTATLHRAGALALWDYATAAPYV +DMNP ASG +D
Sbjct:  275 IGAFSAASNVTGLLEDVDKVTATLHRAGALALWDYATAAPYVHVDMNPSASGLED 329          
BLAST of mRNA_L-digitata_M_contig101679.1.1 vs. uniprot
Match: D7FR81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR81_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 3.640e-22
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 1
Query:    4 IGSFSAASNVTGGLEDVDKVTATLHRAGALALWDYATAAPYVRMDMNPVASGTDD 168
            IG+FSAASNVTG LEDVDKVTATLHRAGALALWDYATAAPYV +DMNP ASG +D
Sbjct:  264 IGAFSAASNVTGLLEDVDKVTATLHRAGALALWDYATAAPYVHVDMNPSASGLED 318          
BLAST of mRNA_L-digitata_M_contig101679.1.1 vs. uniprot
Match: UPI001B887636 (uncharacterized protein LOC121375484 n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B887636)

HSP 1 Score: 84.3 bits (207), Expect = 1.450e-17
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    4 IGSFSAASNVTGGLEDVDKVTATLHRAGALALWDYATAAPYVRMDMNPVASGTDDQ 171
            IGSFSAASN+TG L DVD +TA LHR GALA WDYATAAPYV++DMNPV  G +++
Sbjct:  201 IGSFSAASNITGILVDVDAITACLHRYGALAFWDYATAAPYVKIDMNPVVLGENEK 256          
BLAST of mRNA_L-digitata_M_contig101679.1.1 vs. uniprot
Match: A0A7S0WKI6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0WKI6_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 2.710e-17
Identity = 39/54 (72.22%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    4 IGSFSAASNVTGGLEDVDKVTATLHRAGALALWDYATAAPYVRMDMNPVASGTD 165
            IGSFSAASNVTG   DVD +T TLHR GALA WDYA AAPYV +DMNPV    D
Sbjct:   12 IGSFSAASNVTGVRADVDLITETLHRGGALAFWDYAAAAPYVGIDMNPVVFDAD 65          
BLAST of mRNA_L-digitata_M_contig101679.1.1 vs. uniprot
Match: UPI001B889F72 (uncharacterized protein LOC121374723 n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B889F72)

HSP 1 Score: 83.2 bits (204), Expect = 3.690e-17
Identity = 41/61 (67.21%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    4 IGSFSAASNVTGGLEDVDKVTATLHRAGALALWDYATAAPYVRMDMNPVASGTDDQVRPYK 186
            IGSFSAASN+TG L DVD +TA LHR GALA WDYATAAPYV++DMNP   G  +    YK
Sbjct:  204 IGSFSAASNITGILVDVDAITACLHRYGALAFWDYATAAPYVKIDMNPFVPGLVEMKLAYK 264          
BLAST of mRNA_L-digitata_M_contig101679.1.1 vs. uniprot
Match: UPI00201F23BA (uncharacterized protein LOC124147566 n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F23BA)

HSP 1 Score: 81.6 bits (200), Expect = 1.280e-16
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 1
Query:    4 IGSFSAASNVTGGLEDVDKVTATLHRAGALALWDYATAAPYVRMDMNPVASGTD 165
            IG FSAASN+TG L DV+++T  LH+ GALA WDYATAAPYVR+DMNP+  G+D
Sbjct:  200 IGCFSAASNITGILTDVNRITICLHKHGALAFWDYATAAPYVRIDMNPIVPGSD 253          
BLAST of mRNA_L-digitata_M_contig101679.1.1 vs. uniprot
Match: C1MK02_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MK02_MICPC)

HSP 1 Score: 81.3 bits (199), Expect = 1.700e-16
Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:    4 IGSFSAASNVTGGLEDVDKVTATLHRAGALALWDYATAAPYVRMDMNPVASGTDDQVRPY 183
            IGSFSAASNVTG + DVD +T  LHRAGALA WDYATAA Y+++DMNPV    D  + PY
Sbjct:  188 IGSFSAASNVTGVVADVDGITEDLHRAGALAFWDYATAASYLQVDMNPVRFFPDGTLNPY 247          
BLAST of mRNA_L-digitata_M_contig101679.1.1 vs. uniprot
Match: A0A225V7N4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V7N4_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.750e-16
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 1
Query:    4 IGSFSAASNVTGGLEDVDKVTATLHRAGALALWDYATAAPYVRMDMNPVASGTDDQVRPY 183
            IG+FSAASN+TG L DVD V+A LH+ GALA WDYAT APYV +DMNPV   TD+Q RP+
Sbjct:  212 IGAFSAASNLTGVLTDVDAVSALLHQHGALACWDYATCAPYVNIDMNPVV--TDEQRRPF 269          
BLAST of mRNA_L-digitata_M_contig101679.1.1 vs. uniprot
Match: A0A8B8D6V6_CRAVI (LOW QUALITY PROTEIN: uncharacterized protein LOC111124021 n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8D6V6_CRAVI)

HSP 1 Score: 80.9 bits (198), Expect = 2.400e-16
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    4 IGSFSAASNVTGGLEDVDKVTATLHRAGALALWDYATAAPYVRMDMNPVASGTDDQVRPYK 186
            IG F AASN+TG L DV+ +T  LH+ GALA WDYATAAPYV++DMNPV + +++Q   YK
Sbjct:  206 IGCFCAASNITGNLVDVNSITICLHKHGALAFWDYATAAPYVKIDMNPVVTSSEEQPYVYK 266          
BLAST of mRNA_L-digitata_M_contig101679.1.1 vs. uniprot
Match: K1QLC0_CRAGI (tRNA 2-thiocytidine biosynthesis protein ttcA n=3 Tax=Crassostrea gigas TaxID=29159 RepID=K1QLC0_CRAGI)

HSP 1 Score: 80.9 bits (198), Expect = 2.400e-16
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    4 IGSFSAASNVTGGLEDVDKVTATLHRAGALALWDYATAAPYVRMDMNPVASGTDDQVRPYK 186
            IG F AASNVTG + DV+ +T  LH+ GAL+ WDYATAAPYV++DMNPV + ++DQ   YK
Sbjct:  206 IGCFCAASNVTGSIVDVNSITVCLHKHGALSFWDYATAAPYVKIDMNPVLTSSEDQPYVYK 266          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101679.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLY0_9PHAE3.630e-2287.27Aminotran_5 domain-containing protein n=1 Tax=Ecto... [more]
D7FR81_ECTSI3.640e-2287.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001B8876361.450e-1771.43uncharacterized protein LOC121375484 n=1 Tax=Gigan... [more]
A0A7S0WKI6_9CHLO2.710e-1772.22Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
UPI001B889F723.690e-1767.21uncharacterized protein LOC121374723 n=1 Tax=Gigan... [more]
UPI00201F23BA1.280e-1668.52uncharacterized protein LOC124147566 n=2 Tax=Halio... [more]
C1MK02_MICPC1.700e-1666.67Predicted protein (Fragment) n=1 Tax=Micromonas pu... [more]
A0A225V7N4_9STRA1.750e-1668.33Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A8B8D6V6_CRAVI2.400e-1660.66LOW QUALITY PROTEIN: uncharacterized protein LOC11... [more]
K1QLC0_CRAGI2.400e-1660.66tRNA 2-thiocytidine biosynthesis protein ttcA n=3 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101679contigL-digitata_M_contig101679:258..443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FR81
PFAMsATP_bind_3,Aminotran_5
Model size186
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.97e-23
EggNOG OGsCOG0037@1|root,KOG2840@2759|Eukaryota
DescriptiontRNA thio-modification
Cds size186
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406621.6711962-CDS-L-digitata_M_contig101679:257..4431682406621.6711962-CDS-L-digitata_M_contig101679:257..443Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101679 258..443 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101679.1.1prot_L-digitata_M_contig101679.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101679 258..443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101679.1.1

>prot_L-digitata_M_contig101679.1.1 ID=prot_L-digitata_M_contig101679.1.1|Name=mRNA_L-digitata_M_contig101679.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=62bp
CIGSFSAASNVTGGLEDVDKVTATLHRAGALALWDYATAAPYVRMDMNPV
ASGTDDQVRPYK
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mRNA from alignment at L-digitata_M_contig101679:258..443-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101679.1.1 ID=mRNA_L-digitata_M_contig101679.1.1|Name=mRNA_L-digitata_M_contig101679.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=186bp|location=Sequence derived from alignment at L-digitata_M_contig101679:258..443- (Laminaria digitata LdigPH10_18mv male)
TGTATAGGGTCGTTTTCGGCGGCGTCCAACGTTACCGGCGGGCTGGAGGA CGTGGACAAGGTGACTGCTACGCTTCACCGGGCCGGCGCTTTGGCTTTGT GGGACTACGCCACCGCCGCGCCGTACGTGCGCATGGACATGAACCCGGTG GCTTCGGGCACCGACGACCAGGTTAGACCATATAAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig101679:258..443-

>mRNA_L-digitata_M_contig101679.1.1 ID=mRNA_L-digitata_M_contig101679.1.1|Name=mRNA_L-digitata_M_contig101679.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=186bp|location=Sequence derived from alignment at L-digitata_M_contig101679:258..443- (Laminaria digitata LdigPH10_18mv male)
TGTATAGGGTCGTTTTCGGCGGCGTCCAACGTTACCGGCGGGCTGGAGGA
CGTGGACAAGGTGACTGCTACGCTTCACCGGGCCGGCGCTTTGGCTTTGT
GGGACTACGCCACCGCCGCGCCGTACGTGCGCATGGACATGAACCCGGTG
GCTTCGGGCACCGACGACCAGGTTAGACCATATAAG
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