mRNA_L-digitata_M_contig101672.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101672.2.1
Unique NamemRNA_L-digitata_M_contig101672.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101672.2.1 vs. uniprot
Match: A0A2D9CB40_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2D9CB40_9BACT)

HSP 1 Score: 224 bits (571), Expect = 9.010e-71
Identity = 106/128 (82.81%), Postives = 118/128 (92.19%), Query Frame = 1
Query:    1 HVAATPDTRELCGPGFFAAMQDGAYFINTSRGEIVDEKELIKAIKTKGIRAGLDVYQDQPSSKDIDWMPEIAKVPGISLTHHVGASTDQAQLAVGEVVVRIVGNLMETGDALHVVNRTELSGAVPQGA 384
            HVAATPDT+ELCGPGFFAAM+DGAYF+NTSRGEIVDEKELIKAIKTKGIRAGLDVYQDQPSSKD DW PEIA +PG+SLTHHVGAST+QAQLAVGE  VRIVG  ME+G+ALH+VN  +L+G+VPQ A
Sbjct:  213 HVAATPDTKELCGPGFFAAMKDGAYFVNTSRGEIVDEKELIKAIKTKGIRAGLDVYQDQPSSKDTDWQPEIATIPGVSLTHHVGASTEQAQLAVGEETVRIVGQFMESGEALHIVNAKDLNGSVPQTA 340          
BLAST of mRNA_L-digitata_M_contig101672.2.1 vs. uniprot
Match: A0A2A4RPK4_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A2A4RPK4_9BACT)

HSP 1 Score: 188 bits (477), Expect = 1.430e-56
Identity = 91/130 (70.00%), Postives = 106/130 (81.54%), Query Frame = 1
Query:    1 HVAATPDTRELCGPGFFAAMQDGAYFINTSRGEIVDEKELIKAIKTKGIRAGLDVYQDQPSSKDIDWMPEIAKVPGISLTHHVGASTDQAQLAVGEVVVRIVGNLMETGDALHVVNRTELSGAVPQGAGA 390
            HVA   DTR+LCGP FF AM+DGAYFINTSRGEIV+E+ELI A+KTKGIR GLDVYQDQPSSKDIDW PE+A +PG+SLTHHVGASTDQAQ+AV + +VRIV    ETG   H+VN+ +LS +V   A A
Sbjct:  213 HVACNDDTRDLCGPLFFGAMKDGAYFINTSRGEIVNEQELINAVKTKGIRVGLDVYQDQPSSKDIDWCPELASLPGVSLTHHVGASTDQAQVAVAQEMVRIVEAYKETGTPKHIVNKAQLSESVSDMANA 342          
BLAST of mRNA_L-digitata_M_contig101672.2.1 vs. uniprot
Match: A0A812XRK8_9DINO (PGDH2 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812XRK8_9DINO)

HSP 1 Score: 173 bits (439), Expect = 8.920e-48
Identity = 84/120 (70.00%), Postives = 97/120 (80.83%), Query Frame = 1
Query:    1 HVAATPDTRELCGPGFFAAMQDGAYFINTSRGEIVDEKELIKAIKTKGIRAGLDVYQDQPSSKDIDWMPEIAKVPGISLTHHVGASTDQAQLAVGEVVVRIVGNLMETGDALHVVNRTEL 360
            HVA  PDT +LCGPGFF AM+ GA FINTSRGEIVDE ELIKA+K KGIR GLDVYQ+QPSSKDIDW PE+A++ G+SLTHHVGASTDQAQ AV   V+RI+  ++E    LHVVN+  L
Sbjct:  737 HVALCPDTDKLCGPGFFGAMKPGAMFINTSRGEIVDEAELIKAVKGKGIRVGLDVYQNQPSSKDIDWKPELAELEGVSLTHHVGASTDQAQEAVALEVIRIMHTVIEEARTLHVVNKDSL 856          
BLAST of mRNA_L-digitata_M_contig101672.2.1 vs. uniprot
Match: A0A3M2CMS1_9BACT (Phosphoglycerate dehydrogenase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2CMS1_9BACT)

HSP 1 Score: 161 bits (408), Expect = 3.210e-46
Identity = 77/130 (59.23%), Postives = 98/130 (75.38%), Query Frame = 1
Query:    1 HVAATPDTRELCGPGFFAAMQDGAYFINTSRGEIVDEKELIKAIKTKGIRAGLDVYQDQPSSKDIDWMPEIAKVPGISLTHHVGASTDQAQLAVGEVVVRIVGNLMETGDALHVVNRTELSGAVPQGAGA 390
            HVA+TPDT+ LC   FFAAM+ G++FINTSRG+IVDE  ++ A K K IR G+DVYQDQP++K + W  +IA++PG +LTHH GASTDQAQ AV E VVR+V  L+ETG  LH+VN   L+G   Q AG+
Sbjct:  212 HVASTPDTKGLCDARFFAAMKPGSFFINTSRGDIVDEAAMVAAAKEKDIRVGVDVYQDQPTAKAVGWTTKIAEIPGAALTHHCGASTDQAQAAVAEEVVRVVRTLIETGTPLHIVNGASLTGTPGQPAGS 341          
BLAST of mRNA_L-digitata_M_contig101672.2.1 vs. uniprot
Match: A0A2G2A481_9BACT (Uncharacterized protein n=1 Tax=Phycisphaera sp. TaxID=2030824 RepID=A0A2G2A481_9BACT)

HSP 1 Score: 140 bits (353), Expect = 7.210e-38
Identity = 71/121 (58.68%), Postives = 81/121 (66.94%), Query Frame = 1
Query:    1 HVAATPDTRELCGPGFFAAMQDGAYFINTSRGEIVDEKELIKAIKTKGIRAGLDVYQDQPSSKDIDWMPEIAKVPGISLTHHVGASTDQAQLAVGEVVVRIVGNLMETGDALHVVNRTELS 363
            HV  T +T+  C   FF AM+ GAYFINTSRG +VDE  L  A KT GIRAGLDVY  QP  KD DW P IA VPG+  +HH GASTDQAQLAV + VVR+V    ETG   +V+N   LS
Sbjct:  233 HVPVTAETKGSCDAAFFGAMKPGAYFINTSRGAVVDEAALAAACKTXGIRAGLDVYCXQPGFKDGDWCPGIANVPGVYCSHHCGASTDQAQLAVADEVVRLVXKYKETGXYENVINXDHLS 353          
BLAST of mRNA_L-digitata_M_contig101672.2.1 vs. uniprot
Match: A0A3M8FTQ6_9BACT (Uncharacterized protein n=1 Tax=Phycisphaera sp. TaxID=2030824 RepID=A0A3M8FTQ6_9BACT)

HSP 1 Score: 139 bits (349), Expect = 2.250e-37
Identity = 70/120 (58.33%), Postives = 83/120 (69.17%), Query Frame = 1
Query:    1 HVAATPDTRELCGPGFFAAMQDGAYFINTSRGEIVDEKELIKAIKTKGIRAGLDVYQDQPSSKDIDWMPEIAKVPGISLTHHVGASTDQAQLAVGEVVVRIVGNLMETGDALHVVNRTEL 360
            HV  T +T+  C   FF+AM+ GAYFINTSRG +VDE  L +A ++KGIRA LDVY +QP  KD DW P IA  PG+  THH GASTDQAQLAV + VV +V    ETG A  VVNR +L
Sbjct:  222 HVPVTDETKGSCDKEFFSAMKPGAYFINTSRGPVVDEAALAEACQSKGIRAALDVYCEQPGFKDGDWCPSIANTPGVYCTHHCGASTDQAQLAVSDKVVELVKVFKETGAAECVVNRAKL 341          
BLAST of mRNA_L-digitata_M_contig101672.2.1 vs. uniprot
Match: A0A7V1M1B8_9BACT (Phosphoglycerate dehydrogenase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7V1M1B8_9BACT)

HSP 1 Score: 136 bits (343), Expect = 1.220e-36
Identity = 67/116 (57.76%), Postives = 86/116 (74.14%), Query Frame = 1
Query:    1 HVAATPDTRELCGPGFFAAMQDGAYFINTSRGEIVDEKELIKAIKTKGIRAGLDVYQDQPSSKDIDWMPEIAKVPGISLTHHVGASTDQAQLAVGEVVVRIVGNLMETGDALHVVN 348
            HV A   T+ +C   FF+AM+ G+YFINTSRG +VDE  LI+A+K +GIRAGLDVYQ+QP+ K+ DW  E+AKV G+  +HHVGASTDQAQ AV + VVR+V    +TG   +VVN
Sbjct:  207 HVPANDQTKGMCDSEFFSAMKPGSYFINTSRGALVDEPALIEAVKNRGIRAGLDVYQNQPAFKEGDWDCEVAKVDGVVCSHHVGASTDQAQQAVADEVVRLVRVFQDTGRFENVVN 322          
BLAST of mRNA_L-digitata_M_contig101672.2.1 vs. uniprot
Match: A0A3M2BCL1_9BACT (Phosphoglycerate dehydrogenase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2BCL1_9BACT)

HSP 1 Score: 135 bits (339), Expect = 6.560e-36
Identity = 64/117 (54.70%), Postives = 83/117 (70.94%), Query Frame = 1
Query:    1 HVAATPDTRELCGPGFFAAMQDGAYFINTSRGEIVDEKELIKAIKTKGIRAGLDVYQDQPSSKDIDWMPEIAKVPGISLTHHVGASTDQAQLAVGEVVVRIVGNLMETGDALHVVNR 351
            HV  T +TR +C   FF+ M+ G  F+NT+RG IVDEK L++A++ K ++ GLDVY DQP  K+ DWMP IA+ P +  THH+GAST+QAQLAVGE VVRIV    ETG   + VN+
Sbjct:  227 HVPLTDETRGMCDAEFFSRMRRGTIFVNTARGAIVDEKALLEAVEAKDLKVGLDVYCDQPEEKECDWMPAIARHPNVITTHHIGASTEQAQLAVGEEVVRIVRVYRETGQFENQVNK 343          
BLAST of mRNA_L-digitata_M_contig101672.2.1 vs. uniprot
Match: A0A0B6WYT5_9BACT (D-3-phosphoglycerate dehydrogenase n=1 Tax=Pyrinomonas methylaliphatogenes TaxID=454194 RepID=A0A0B6WYT5_9BACT)

HSP 1 Score: 135 bits (341), Expect = 9.470e-36
Identity = 68/123 (55.28%), Postives = 88/123 (71.54%), Query Frame = 1
Query:    1 HVAATPDTRELCGPGFFAAMQDGAYFINTSRGEIVDEKELIKAIKTKGIRAGLDVYQDQPSSKDIDWMPEIAKVPGISLTHHVGASTDQAQLAVGEVVVRIVGNLMETGDALHVVNRTELSGA 369
            H+A TP+TR + G  FFAAM++GAYFINTSRGEIVD+  LIKA++ +GIRAGLDVY  +P++   D+  EIA+ P +  THH+GASTDQAQ A+    VRI+    ETG   +VVN  E + A
Sbjct:  202 HLALTPETRGMIGAEFFAAMREGAYFINTSRGEIVDQAALIKAMRERGIRAGLDVYASEPTAGTDDFNDEIAREPNLYGTHHIGASTDQAQEAIAAETVRIIKTFKETGKVPNVVNLAERTPA 324          
BLAST of mRNA_L-digitata_M_contig101672.2.1 vs. uniprot
Match: A0A660TU50_9SPIR (D-3-phosphoglycerate dehydrogenase n=1 Tax=Spirochaetes bacterium TaxID=2202144 RepID=A0A660TU50_9SPIR)

HSP 1 Score: 135 bits (341), Expect = 9.630e-36
Identity = 68/119 (57.14%), Postives = 87/119 (73.11%), Query Frame = 1
Query:    1 HVAATPDTRELCGPGFFAAMQDGAYFINTSRGEIVDEKELIKAIKTKGIRAGLDVYQDQPSSKDIDWMPEIAKVPGISLTHHVGASTDQAQLAVGEVVVRIVGNLMETGDALHVVNRTE 357
            H+A TP+T+ + G  FF A++DGAYFINTSR EIVDEK LIKAI+ KGIRAGLDV+  +PS K+     ++A  PG+  THH+GAST+QAQ AV +  VRIV N ++TG  L+ VN  E
Sbjct:  203 HLALTPETKGIIGKNFFNALKDGAYFINTSRAEIVDEKALIKAIEEKGIRAGLDVFSGEPSYKEGSIQDQLALNPGVYGTHHIGASTEQAQEAVADETVRIVENYLKTGKVLNCVNIME 321          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101672.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D9CB40_9BACT9.010e-7182.81Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
A0A2A4RPK4_9BACT1.430e-5670.00Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
A0A812XRK8_9DINO8.920e-4870.00PGDH2 protein n=1 Tax=Symbiodinium sp. CCMP2592 Ta... [more]
A0A3M2CMS1_9BACT3.210e-4659.23Phosphoglycerate dehydrogenase n=1 Tax=Planctomyce... [more]
A0A2G2A481_9BACT7.210e-3858.68Uncharacterized protein n=1 Tax=Phycisphaera sp. T... [more]
A0A3M8FTQ6_9BACT2.250e-3758.33Uncharacterized protein n=1 Tax=Phycisphaera sp. T... [more]
A0A7V1M1B8_9BACT1.220e-3657.76Phosphoglycerate dehydrogenase n=1 Tax=Phycisphaer... [more]
A0A3M2BCL1_9BACT6.560e-3654.70Phosphoglycerate dehydrogenase n=1 Tax=Planctomyce... [more]
A0A0B6WYT5_9BACT9.470e-3655.28D-3-phosphoglycerate dehydrogenase n=1 Tax=Pyrinom... [more]
A0A660TU50_9SPIR9.630e-3657.14D-3-phosphoglycerate dehydrogenase n=1 Tax=Spiroch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101672contigL-digitata_M_contig101672:527..922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1035308.AQYY01000001_gene2783
Preferred nameserA
PFAMs2-Hacid_dh,2-Hacid_dh_C,ACT
Model size396
Max annot lvl186801|Clostridia
KEGG rclassRC00031
KEGG koko:K00058
KEGG ReactionR01513
KEGG Pathwayko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230
KEGG ModuleM00020
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.24e-33
EggNOG OGsCOG0111@1|root,COG0111@2|Bacteria,1V410@1239|Firmicutes,248H9@186801|Clostridia,260G0@186807|Peptococcaceae
EC1.1.1.399,1.1.1.95
DescriptionD-isomer specific 2-hydroxyacid dehydrogenase catalytic
Cds size396
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406621.6404023-CDS-L-digitata_M_contig101672:526..9221682406621.6404023-CDS-L-digitata_M_contig101672:526..922Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101672 527..922 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101672.2.1prot_L-digitata_M_contig101672.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101672 527..922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101672.2.1

>prot_L-digitata_M_contig101672.2.1 ID=prot_L-digitata_M_contig101672.2.1|Name=mRNA_L-digitata_M_contig101672.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=132bp
HVAATPDTRELCGPGFFAAMQDGAYFINTSRGEIVDEKELIKAIKTKGIR
AGLDVYQDQPSSKDIDWMPEIAKVPGISLTHHVGASTDQAQLAVGEVVVR
IVGNLMETGDALHVVNRTELSGAVPQGAGAE*
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mRNA from alignment at L-digitata_M_contig101672:527..922-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101672.2.1 ID=mRNA_L-digitata_M_contig101672.2.1|Name=mRNA_L-digitata_M_contig101672.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=396bp|location=Sequence derived from alignment at L-digitata_M_contig101672:527..922- (Laminaria digitata LdigPH10_18mv male)
CATGTTGCGGCGACGCCCGACACCCGCGAACTGTGCGGCCCAGGCTTCTT CGCCGCCATGCAGGACGGGGCGTATTTCATCAACACCTCCCGCGGCGAGA TCGTGGACGAGAAGGAACTCATCAAGGCCATCAAGACCAAGGGCATCCGT GCCGGGCTCGATGTTTATCAGGACCAGCCCAGCAGCAAGGACATCGACTG GATGCCCGAGATCGCCAAAGTGCCCGGGATCTCGCTGACGCACCATGTCG GCGCCTCGACCGATCAGGCCCAGCTCGCGGTCGGCGAGGTGGTCGTCCGC ATCGTGGGCAACCTGATGGAGACCGGTGATGCCCTGCATGTGGTCAACCG CACCGAACTCAGCGGCGCGGTCCCTCAGGGCGCCGGGGCGGAATAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig101672:527..922-

>mRNA_L-digitata_M_contig101672.2.1 ID=mRNA_L-digitata_M_contig101672.2.1|Name=mRNA_L-digitata_M_contig101672.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=396bp|location=Sequence derived from alignment at L-digitata_M_contig101672:527..922- (Laminaria digitata LdigPH10_18mv male)
CATGTTGCGGCGACGCCCGACACCCGCGAACTGTGCGGCCCAGGCTTCTT
CGCCGCCATGCAGGACGGGGCGTATTTCATCAACACCTCCCGCGGCGAGA
TCGTGGACGAGAAGGAACTCATCAAGGCCATCAAGACCAAGGGCATCCGT
GCCGGGCTCGATGTTTATCAGGACCAGCCCAGCAGCAAGGACATCGACTG
GATGCCCGAGATCGCCAAAGTGCCCGGGATCTCGCTGACGCACCATGTCG
GCGCCTCGACCGATCAGGCCCAGCTCGCGGTCGGCGAGGTGGTCGTCCGC
ATCGTGGGCAACCTGATGGAGACCGGTGATGCCCTGCATGTGGTCAACCG
CACCGAACTCAGCGGCGCGGTCCCTCAGGGCGCCGGGGCGGAATAA
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