mRNA_L-digitata_M_contig101672.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101672.1.1
Unique NamemRNA_L-digitata_M_contig101672.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101672.1.1 vs. uniprot
Match: A0A2D9CB36_9BACT (Phosphoserine aminotransferase n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A2D9CB36_9BACT)

HSP 1 Score: 312 bits (799), Expect = 1.480e-104
Identity = 144/155 (92.90%), Postives = 150/155 (96.77%), Query Frame = 1
Query:    1 MSDRVYNFSAGPACLPESVIKQAQKDLWNHMESGIGILEHSHRNQYFDKVTHDTEANCREVGNIPEDMAIFWMQGGATSQCYMVPANFLASDRTADYFQTGKWANDSINEVHHYGTVHICGSSKDKNYSYIPKGDQVHYSDNPAYVQYTSNNTIM 465
            MS+RVYNFSAGPACLPESVIKQAQKDLWNHM+SGIGILEHSHRN+YFDKVT  TEA+CREVGNIP+DMAIFWMQGGATSQCYMVPANFL SDRTADYFQTGKWANDSINEVHHYGTVHICGSSKDKNYSYIPKGDQV YSDNP YVQ+TSNNTIM
Sbjct:    1 MSERVYNFSAGPACLPESVIKQAQKDLWNHMDSGIGILEHSHRNKYFDKVTEQTEASCREVGNIPDDMAIFWMQGGATSQCYMVPANFLPSDRTADYFQTGKWANDSINEVHHYGTVHICGSSKDKNYSYIPKGDQVQYSDNPVYVQFTSNNTIM 155          
BLAST of mRNA_L-digitata_M_contig101672.1.1 vs. uniprot
Match: A0A2A4RQ09_9BACT (Phosphoserine aminotransferase n=1 Tax=bacterium TaxID=1869227 RepID=A0A2A4RQ09_9BACT)

HSP 1 Score: 286 bits (731), Expect = 3.040e-94
Identity = 131/155 (84.52%), Postives = 143/155 (92.26%), Query Frame = 1
Query:    1 MSDRVYNFSAGPACLPESVIKQAQKDLWNHMESGIGILEHSHRNQYFDKVTHDTEANCREVGNIPEDMAIFWMQGGATSQCYMVPANFLASDRTADYFQTGKWANDSINEVHHYGTVHICGSSKDKNYSYIPKGDQVHYSDNPAYVQYTSNNTIM 465
            MSDRVYNFSAGPACLPESV+KQAQKD+WN  +SGIGILEHSHRN++FD+VTH+TEA+CR VGNIP+DMAIFWMQGGATSQCYMVPANFL   RTADYFQTGKWANDSI EVHHYG VHICGSSKD  Y++IPKGDQV  SDNPAYVQ+TSNNTIM
Sbjct:    1 MSDRVYNFSAGPACLPESVLKQAQKDIWNIFDSGIGILEHSHRNKFFDRVTHETEADCRTVGNIPDDMAIFWMQGGATSQCYMVPANFLPEGRTADYFQTGKWANDSIEEVHHYGKVHICGSSKDTTYNHIPKGDQVKNSDNPAYVQFTSNNTIM 155          
BLAST of mRNA_L-digitata_M_contig101672.1.1 vs. uniprot
Match: A0A7C5SJL9_9BACT (Phosphoserine aminotransferase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7C5SJL9_9BACT)

HSP 1 Score: 257 bits (656), Expect = 6.700e-83
Identity = 119/155 (76.77%), Postives = 133/155 (85.81%), Query Frame = 1
Query:    1 MSDRVYNFSAGPACLPESVIKQAQKDLWNHMESGIGILEHSHRNQYFDKVTHDTEANCREVGNIPEDMAIFWMQGGATSQCYMVPANFLASDRTADYFQTGKWANDSINEVHHYGTVHICGSSKDKNYSYIPKGDQVHYSDNPAYVQYTSNNTIM 465
            MSDRVYNFSAGPA LPESV+KQAQKD+W+  ++GIGILEHSHR+  FD+VTH+TEA CR VGNIP+D A+ WMQGGATSQCY VPANFL  DRTADYFQTGKWANDSI EV  YG +HICGSSKD  Y +IP GD+V YSDNP YVQ+TSNNTIM
Sbjct:    1 MSDRVYNFSAGPATLPESVLKQAQKDIWDLFDTGIGILEHSHRDAAFDRVTHETEAACRAVGNIPDDYAVTWMQGGATSQCYFVPANFLPEDRTADYFQTGKWANDSIKEVPLYGNLHICGSSKDTGYDHIPVGDEVKYSDNPVYVQFTSNNTIM 155          
BLAST of mRNA_L-digitata_M_contig101672.1.1 vs. uniprot
Match: A0A3M2CXI0_9BACT (Phosphoserine aminotransferase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2CXI0_9BACT)

HSP 1 Score: 236 bits (603), Expect = 7.500e-75
Identity = 110/155 (70.97%), Postives = 129/155 (83.23%), Query Frame = 1
Query:    1 MSDRVYNFSAGPACLPESVIKQAQKDLWNHMESGIGILEHSHRNQYFDKVTHDTEANCREVGNIPEDMAIFWMQGGATSQCYMVPANFLASDRTADYFQTGKWANDSINEVHHYGTVHICGSSKDKNYSYIPKGDQVHYSDNPAYVQYTSNNTIM 465
            MS+RV+NFSAGPACLPESV+KQAQKD+++   SGIGILEHSHR + FD++TH+TEA CREVGNIP+D ++FWMQGGATSQCYMVPANFL   +TADYF+TGKWA DSI EV  YG  HICGSSK  N+  IP  D + YS NP YVQ+TSNNTI+
Sbjct:    1 MSNRVFNFSAGPACLPESVLKQAQKDIYDIDGSGIGILEHSHRGKVFDRITHETEALCREVGNIPDDYSVFWMQGGATSQCYMVPANFLGEGQTADYFETGKWACDSIREVPLYGECHICGSSKATNFDRIPAKDDIKYSANPVYVQFTSNNTIV 155          
BLAST of mRNA_L-digitata_M_contig101672.1.1 vs. uniprot
Match: A0A5M4D1F4_9CYAN (Phosphoserine aminotransferase n=1 Tax=Cyanobacteria bacterium CYA TaxID=2484221 RepID=A0A5M4D1F4_9CYAN)

HSP 1 Score: 234 bits (596), Expect = 8.300e-74
Identity = 107/152 (70.39%), Postives = 124/152 (81.58%), Query Frame = 1
Query:   10 RVYNFSAGPACLPESVIKQAQKDLWNHMESGIGILEHSHRNQYFDKVTHDTEANCREVGNIPEDMAIFWMQGGATSQCYMVPANFLASDRTADYFQTGKWANDSINEVHHYGTVHICGSSKDKNYSYIPKGDQVHYSDNPAYVQYTSNNTIM 465
            + YNFSAGP  LPE V+KQAQ+D+W+   SG+GILE SHR + FDK+T +TEA CR+V  IP+D A+FWMQGGATSQCY VPANFL +DRTADYFQTGKWANDSI EV HYGT HICGSSKD NY  IP G +V YS+NP YV +T+NNTIM
Sbjct:    3 KTYNFSAGPGVLPEPVLKQAQQDIWDIYGSGMGILELSHRGKEFDKITAETEAACRQVAGIPDDYAVFWMQGGATSQCYFVPANFLPADRTADYFQTGKWANDSIKEVPHYGTCHICGSSKDTNYDRIPAGGEVKYSENPVYVHFTANNTIM 154          
BLAST of mRNA_L-digitata_M_contig101672.1.1 vs. uniprot
Match: A0A3M2BJK3_9BACT (Phosphoserine aminotransferase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2BJK3_9BACT)

HSP 1 Score: 228 bits (581), Expect = 1.610e-71
Identity = 106/155 (68.39%), Postives = 126/155 (81.29%), Query Frame = 1
Query:    1 MSDRVYNFSAGPACLPESVIKQAQKDLWNHMESGIGILEHSHRNQYFDKVTHDTEANCREVGNIPEDMAIFWMQGGATSQCYMVPANFLASDRTADYFQTGKWANDSINEVHHYGTVHICGSSKDKNYSYIPKGDQVHYSDNPAYVQYTSNNTIM 465
            M +RVYNFSAGPA LP+ V+K+AQ+DL +   SG+G++E SHR + FD++T++TEA CREV +IP+D A+FWMQGGATSQCY VPANFL  DRTADYFQTGKWANDSI EV  YGT HIC SSKD  Y++IP GD V YS NP YV +TSNNTIM
Sbjct:    1 MGNRVYNFSAGPATLPKPVLKKAQQDLVDIFGSGMGVVEISHRGKEFDRITYETEAACREVADIPDDYAVFWMQGGATSQCYFVPANFLPPDRTADYFQTGKWANDSIKEVPLYGTCHICASSKDAGYNHIPTGDDVKYSSNPVYVHFTSNNTIM 155          
BLAST of mRNA_L-digitata_M_contig101672.1.1 vs. uniprot
Match: A0A2E2N924_9BACT (Phosphoserine aminotransferase n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E2N924_9BACT)

HSP 1 Score: 227 bits (579), Expect = 3.140e-71
Identity = 106/156 (67.95%), Postives = 126/156 (80.77%), Query Frame = 1
Query:    1 MSDR-VYNFSAGPACLPESVIKQAQKDLWNHMESGIGILEHSHRNQYFDKVTHDTEANCREVGNIPEDMAIFWMQGGATSQCYMVPANFLASDRTADYFQTGKWANDSINEVHHYGTVHICGSSKDKNYSYIPKGDQVHYSDNPAYVQYTSNNTIM 465
            MS+R  +NFSAGP  LPESVI++AQ+D+W+   +GIGILEHSHR + FD++T + EA+ R++  + +D AIFWMQGGATSQCY VPAN L    TADYFQTGKWANDSI EV HYGT+HICGSSKDKNYSYIP GD+V YS  P YV +TSNNTIM
Sbjct:    1 MSERKTFNFSAGPGTLPESVIRKAQQDIWDIDGTGIGILEHSHRGKTFDRITEECEASARQLAGVGDDYAIFWMQGGATSQCYFVPANLLPEGETADYFQTGKWANDSIKEVPHYGTLHICGSSKDKNYSYIPMGDEVTYSPKPRYVHFTSNNTIM 156          
BLAST of mRNA_L-digitata_M_contig101672.1.1 vs. uniprot
Match: A0A2G2A454_9BACT (Phosphoserine aminotransferase n=1 Tax=Phycisphaera sp. TaxID=2030824 RepID=A0A2G2A454_9BACT)

HSP 1 Score: 195 bits (496), Expect = 1.080e-58
Identity = 90/152 (59.21%), Postives = 110/152 (72.37%), Query Frame = 1
Query:   10 RVYNFSAGPACLPESVIKQAQKDLWNHMESGIGILEHSHRNQYFDKVTHDTEANCREVGNIPEDMAIFWMQGGATSQCYMVPANFLASDRTADYFQTGKWANDSINEVHHYGTVHICGSSKDKNYSYIPKGDQVHYSDNPAYVQYTSNNTIM 465
            R YNFSAGP  +PE VI+ AQ+DLW+   SGIGILEHSHR + FD+V  + EA+CR VGNIP++  + ++QGGAT+QCY VP  FLA  +TADYF TGKWA DS+ E   YGTVH+ GSS+   +  IP      YSD+P YV YTSNNTIM
Sbjct:   14 RAYNFSAGPGVIPEDVIRAAQEDLWSIFGSGIGILEHSHRGKEFDRVIEEAEADCRRVGNIPDNYRVLFLQGGATTQCYQVPMAFLADGKTADYFSTGKWATDSMKEAGRYGTVHVAGSSEATAFDRIPDDADTKYSDSPTYVHYTSNNTIM 165          
BLAST of mRNA_L-digitata_M_contig101672.1.1 vs. uniprot
Match: UPI001996EC37 (3-phosphoserine/phosphohydroxythreonine transaminase n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=UPI001996EC37)

HSP 1 Score: 191 bits (486), Expect = 1.320e-58
Identity = 89/153 (58.17%), Postives = 116/153 (75.82%), Query Frame = 1
Query:    4 SDRVYNFSAGPACLPESVIKQAQKDLWNHMESGIGILEHSHRNQYFDKVTHDTEANCREVGNIPEDMAIFWMQGGATSQCYMVPANFLASDRTADYFQTGKWANDSINEVHHYGTVHICGSSKDKNYSYIPKGDQVHYSDNPAYVQYTSNNTI 462
            SDR++NFSAGP CLP+ V+KQAQ+DLWN   SGIGILEHSHR + FD+V  + EA+ REVG  P +  I ++ GGA++Q +M+PAN L    TADY  +G WA  SI EV +YGTVH+ GSSKDKN+S+IP  +++ +S +PAY+ YTSNNTI
Sbjct:   19 SDRIFNFSAGPGCLPDEVLKQAQQDLWNIDGSGIGILEHSHRGRVFDRVLAEVEADVREVGKTPANYKILFLTGGASTQNFMIPANLLPVGGTADYINSGYWAEKSIEEVKYYGTVHLAGSSKDKNHSFIPAQNELKFSASPAYLHYTSNNTI 171          
BLAST of mRNA_L-digitata_M_contig101672.1.1 vs. uniprot
Match: A0A7V1Q2P7_9BACT (Phosphoserine aminotransferase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7V1Q2P7_9BACT)

HSP 1 Score: 195 bits (495), Expect = 1.650e-58
Identity = 88/152 (57.89%), Postives = 110/152 (72.37%), Query Frame = 1
Query:   10 RVYNFSAGPACLPESVIKQAQKDLWNHMESGIGILEHSHRNQYFDKVTHDTEANCREVGNIPEDMAIFWMQGGATSQCYMVPANFLASDRTADYFQTGKWANDSINEVHHYGTVHICGSSKDKNYSYIPKGDQVHYSDNPAYVQYTSNNTIM 465
            R YNFSAGP  +PE VI+Q QKDLW+   SGIGILEHSHR + FD+V  + EA+CR+VGNIP++  + ++QGGAT+QCY +P  FLA D TADY  TGKW+ DS NE   YG VH+ GSS+   +  IP    + YSD+P YV +TSNNTIM
Sbjct:   16 RAYNFSAGPGAVPEDVIRQTQKDLWDLFGSGIGILEHSHRGKEFDRVLEEAEADCRQVGNIPDNYRVLFLQGGATTQCYQIPMAFLAEDATADYIYTGKWSGDSKNEAARYGHVHVAGSSEATGFDRIPDDSDISYSDSPTYVHFTSNNTIM 167          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101672.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D9CB36_9BACT1.480e-10492.90Phosphoserine aminotransferase n=2 Tax=Phycisphaer... [more]
A0A2A4RQ09_9BACT3.040e-9484.52Phosphoserine aminotransferase n=1 Tax=bacterium T... [more]
A0A7C5SJL9_9BACT6.700e-8376.77Phosphoserine aminotransferase n=1 Tax=Phycisphaer... [more]
A0A3M2CXI0_9BACT7.500e-7570.97Phosphoserine aminotransferase n=1 Tax=Planctomyce... [more]
A0A5M4D1F4_9CYAN8.300e-7470.39Phosphoserine aminotransferase n=1 Tax=Cyanobacter... [more]
A0A3M2BJK3_9BACT1.610e-7168.39Phosphoserine aminotransferase n=1 Tax=Planctomyce... [more]
A0A2E2N924_9BACT3.140e-7167.95Phosphoserine aminotransferase n=1 Tax=Phycisphaer... [more]
A0A2G2A454_9BACT1.080e-5859.21Phosphoserine aminotransferase n=1 Tax=Phycisphaer... [more]
UPI001996EC371.320e-5858.173-phosphoserine/phosphohydroxythreonine transamina... [more]
A0A7V1Q2P7_9BACT1.650e-5857.89Phosphoserine aminotransferase n=1 Tax=Phycisphaer... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101672contigL-digitata_M_contig101672:2..466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1123242.JH636434_gene3959
Preferred nameserC
PFAMsAminotran_5
Model size465
Max annot lvl203682|Planctomycetes
KEGG rclassRC00006,RC00036
KEGG koko:K00831
KEGG ReactionR04173,R05085
KEGG Pathwayko00260,ko00680,ko00750,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map00750,map01100,map01120,map01130,map01200,map01230
KEGG ModuleM00020,M00124
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004648,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Exons1
Evalue4.19e-49
EggNOG OGsCOG1932@1|root,COG1932@2|Bacteria,2IYR7@203682|Planctomycetes
EC2.6.1.52
DescriptionCatalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
Cds size465
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406621.6085892-CDS-L-digitata_M_contig101672:1..4661682406621.6085892-CDS-L-digitata_M_contig101672:1..466Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101672 2..466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101672.1.1prot_L-digitata_M_contig101672.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101672 2..466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101672.1.1

>prot_L-digitata_M_contig101672.1.1 ID=prot_L-digitata_M_contig101672.1.1|Name=mRNA_L-digitata_M_contig101672.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=155bp
MSDRVYNFSAGPACLPESVIKQAQKDLWNHMESGIGILEHSHRNQYFDKV
THDTEANCREVGNIPEDMAIFWMQGGATSQCYMVPANFLASDRTADYFQT
GKWANDSINEVHHYGTVHICGSSKDKNYSYIPKGDQVHYSDNPAYVQYTS
NNTIM
back to top

mRNA from alignment at L-digitata_M_contig101672:2..466-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101672.1.1 ID=mRNA_L-digitata_M_contig101672.1.1|Name=mRNA_L-digitata_M_contig101672.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=465bp|location=Sequence derived from alignment at L-digitata_M_contig101672:2..466- (Laminaria digitata LdigPH10_18mv male)
ATGAGCGACCGTGTTTACAACTTTTCAGCCGGGCCAGCGTGCCTCCCCGA GTCGGTGATCAAGCAGGCCCAAAAAGACCTGTGGAATCACATGGAGTCCG GGATCGGCATCCTTGAGCACTCGCACCGTAACCAGTACTTCGACAAAGTG ACCCATGACACCGAGGCCAACTGCCGCGAGGTGGGCAACATCCCTGAGGA CATGGCGATCTTTTGGATGCAGGGCGGCGCGACCAGCCAGTGCTACATGG TCCCAGCGAACTTCCTCGCGTCCGACCGCACCGCGGACTACTTCCAGACC GGCAAGTGGGCAAACGACTCCATCAACGAGGTGCATCACTATGGCACCGT TCATATCTGCGGCTCATCCAAGGACAAGAACTACAGCTACATCCCCAAAG GCGATCAGGTCCACTACTCGGACAACCCCGCCTATGTGCAGTACACCAGC AACAACACCATCATG
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig101672:2..466-

>mRNA_L-digitata_M_contig101672.1.1 ID=mRNA_L-digitata_M_contig101672.1.1|Name=mRNA_L-digitata_M_contig101672.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=465bp|location=Sequence derived from alignment at L-digitata_M_contig101672:2..466- (Laminaria digitata LdigPH10_18mv male)
ATGAGCGACCGTGTTTACAACTTTTCAGCCGGGCCAGCGTGCCTCCCCGA
GTCGGTGATCAAGCAGGCCCAAAAAGACCTGTGGAATCACATGGAGTCCG
GGATCGGCATCCTTGAGCACTCGCACCGTAACCAGTACTTCGACAAAGTG
ACCCATGACACCGAGGCCAACTGCCGCGAGGTGGGCAACATCCCTGAGGA
CATGGCGATCTTTTGGATGCAGGGCGGCGCGACCAGCCAGTGCTACATGG
TCCCAGCGAACTTCCTCGCGTCCGACCGCACCGCGGACTACTTCCAGACC
GGCAAGTGGGCAAACGACTCCATCAACGAGGTGCATCACTATGGCACCGT
TCATATCTGCGGCTCATCCAAGGACAAGAACTACAGCTACATCCCCAAAG
GCGATCAGGTCCACTACTCGGACAACCCCGCCTATGTGCAGTACACCAGC
AACAACACCATCATG
back to top