mRNA_L-digitata_M_contig101671.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101671.2.1
Unique NamemRNA_L-digitata_M_contig101671.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101671.2.1 vs. uniprot
Match: A0A6H5KCP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP6_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 2.240e-35
Identity = 63/78 (80.77%), Postives = 70/78 (89.74%), Query Frame = 1
Query:  154 VRRVLKEVSIRRRFYTG-DGQPFPPGPSAVVLVSHGDALQLLQCLLAGRPLEQHRSLPHLENCGVRALRPPQEEGEGV 384
            +RR+ KE+SIR+R+Y+G DGQPFPPGPSAVVLVSHGDALQLLQC LAGRP EQHRSLPHLENCG+R LRPP  E EGV
Sbjct:    1 MRRLRKEISIRQRYYSGADGQPFPPGPSAVVLVSHGDALQLLQCALAGRPAEQHRSLPHLENCGIRVLRPPPGE-EGV 77          
BLAST of mRNA_L-digitata_M_contig101671.2.1 vs. uniprot
Match: UPI00140C2320 (histidine phosphatase family protein n=1 Tax=Pseudomaricurvus alcaniphilus TaxID=1166482 RepID=UPI00140C2320)

HSP 1 Score: 81.6 bits (200), Expect = 1.860e-16
Identity = 47/118 (39.83%), Postives = 68/118 (57.63%), Query Frame = 1
Query:    7 LRERGFGDFEGHDDGPSYEKVWALDALSSRHGEFGVEPASEVAARTAAVVRRVLKEVSIRRRFYTGDGQPFPPGPSAVVLVSHGDALQLLQCLLAGRPLEQHRSLPHLENCGVRALRP 360
            LRER FG+ +G  D  +Y +VWALDA ++ H  FGVE  ++V  R   ++ ++ ++ S         GQ        ++LV+HGD LQ+LQ   AG+P  +HRSLPHL    +R L P
Sbjct:   97 LRERDFGELDGAADS-NYARVWALDADNADHKTFGVESVNQVRQRALQLLAQIEQQCS---------GQ-------TIILVAHGDLLQILQTWFAGQPAARHRSLPHLGTAELRPLNP 197          
BLAST of mRNA_L-digitata_M_contig101671.2.1 vs. uniprot
Match: A0A7S2DRX8_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DRX8_9EUKA)

HSP 1 Score: 78.2 bits (191), Expect = 4.890e-16
Identity = 47/117 (40.17%), Postives = 60/117 (51.28%), Query Frame = 1
Query:    7 LRERGFGDFEGHDDGPSYEKVWALDALSSRHGEFGVEPASEVAARTAAVVRRVLKEVSIRRRFYTGDGQPFPPGPSAVVLVSHGDALQLLQCLLAGRPLEQHRSLPHLENCGVRALR 357
            LRER FG+ +G  D   Y+ VW  DALSS H EFG E  S V  R   VV ++     +             PG   +++V+HGD LQ+LQ   A   +  HRSL HL    +RALR
Sbjct:    2 LRERSFGELDGQSD-KRYQDVWQHDALSSTHTEFGSEAISSVQERAWGVVEQMESNEQL-------------PGRWMIIVVAHGDVLQILQTAFARVDVRTHRSLEHLPTATLRALR 104          
BLAST of mRNA_L-digitata_M_contig101671.2.1 vs. uniprot
Match: UPI001D0B8B2A (histidine phosphatase family protein n=1 Tax=Halomonas malpeensis TaxID=1172368 RepID=UPI001D0B8B2A)

HSP 1 Score: 80.1 bits (196), Expect = 6.950e-16
Identity = 50/108 (46.30%), Postives = 63/108 (58.33%), Query Frame = 1
Query:    7 LRERGFGDFEGHDDGPSYEKVWALDALSSRHGEFGVEPASEVAARTAAVVRRVLKEVSIRRRFYTGDGQPFPPGPSAVVLVSHGDALQLLQCLLAGRPLEQHRSLPHL 330
            LRERGFG+FEG  D  +Y  VW  DA S+ H   GVEP S VAAR    +R  ++ +  R   YTG+          +++VSHGD LQ+L   LAGRPL +HR  P L
Sbjct:   97 LRERGFGEFEGGADS-AYPTVWEQDAASAEHDTGGVEPVSRVAAR----MREAIEALEQR---YTGE---------VILVVSHGDPLQILLTALAGRPLTRHREQPAL 187          
BLAST of mRNA_L-digitata_M_contig101671.2.1 vs. uniprot
Match: F0Y5Y4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5Y4_AURAN)

HSP 1 Score: 80.1 bits (196), Expect = 8.630e-16
Identity = 54/119 (45.38%), Postives = 62/119 (52.10%), Query Frame = 1
Query:    7 LRERGFGDFEGHDDGPS--YEKVWALDALSSRHGEFGVEPASEVAARTAAVVRRVLKEVSIRRRFYTGDGQPFPPGPSAVVLVSHGDALQLLQCLLAGRPLEQHRSLPHLENCGVRALR 357
            LRER FGD +G   GP+  YE VWA DA  + H    VE    V ART A VR              G+G+        V+LVSHGDALQ+LQ   A      HRSLPHLE C +R LR
Sbjct:  101 LRERDFGDLDG---GPNDTYEDVWARDAADAGHEWSRVESVERVLARTTAAVREADA---------AGEGR-------LVLLVSHGDALQILQTAFADVDPRTHRSLPHLETCELRPLR 200          
BLAST of mRNA_L-digitata_M_contig101671.2.1 vs. uniprot
Match: UPI00166A5D18 (histidine phosphatase family protein n=1 Tax=Halomonas lutescens TaxID=1602943 RepID=UPI00166A5D18)

HSP 1 Score: 79.3 bits (194), Expect = 1.400e-15
Identity = 50/108 (46.30%), Postives = 63/108 (58.33%), Query Frame = 1
Query:    7 LRERGFGDFEGHDDGPSYEKVWALDALSSRHGEFGVEPASEVAARTAAVVRRVLKEVSIRRRFYTGDGQPFPPGPSAVVLVSHGDALQLLQCLLAGRPLEQHRSLPHL 330
            LRER FG+ +G  D   Y  VWA DA S+ H ++ VEP S VAAR  AV+       ++ +RF TG+          V++VSHGD LQ+L   LAGRPL QHR  P L
Sbjct:   97 LRERHFGELDGQAD-HHYPDVWAFDAQSAEHAQWQVEPVSRVAARMCAVLE------ALEQRF-TGE---------TVLVVSHGDPLQILLAALAGRPLTQHREQPAL 187          
BLAST of mRNA_L-digitata_M_contig101671.2.1 vs. uniprot
Match: R1BXL2_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BXL2_EMIHU)

HSP 1 Score: 79.7 bits (195), Expect = 1.510e-15
Identity = 51/119 (42.86%), Postives = 59/119 (49.58%), Query Frame = 1
Query:    7 LRERGFGDFEGHDDGPSYEKVWALDALSSRHGEFGVEPASEVAARTAAVVRRVLKEVSIRRRFYTGDGQPFPPGPSAVVLVSHGDALQLLQCLLAGRPLEQHRSLPHLENCGVRALRPP 363
            LRER FG   G  D   Y  VW  DA+S+ H EFG EP + V  R   VV R+  E+               PG   VVLV+HGD LQ+LQ   A      HRSLPHLE   +R L  P
Sbjct:  111 LRERSFGTLSGGPDS-RYADVWVHDAVSATHTEFGSEPVTSVRERAWGVVERLEAEL---------------PGRCMVVLVAHGDVLQILQTRFACVDPRTHRSLPHLETATLRRLSLP 213          
BLAST of mRNA_L-digitata_M_contig101671.2.1 vs. uniprot
Match: A0A8J2WYG9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WYG9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.540e-15
Identity = 54/118 (45.76%), Postives = 64/118 (54.24%), Query Frame = 1
Query:    7 LRERGFGDFEGHDDGPS--YEKVWALDALSSRHGEFGVEPASEVAARTAAVVRRVLKEVSIRRRFYTGDGQPFPPGPSAVVLVSHGDALQLLQCLLAGRPLEQHRSLPHLENCGVRAL 354
            LRER FGDFE    GP+  YE VW  DA+ + H  +GVE A  V  R A  V+RV             +G        AV+LVSHGD LQ+LQ   AG  +  HRSLPHLE C +R L
Sbjct:  129 LRERDFGDFEL---GPNTAYEAVWEQDAIDATHTAWGVEAACAVLERAAGAVQRVEG---------AREGH-------AVLLVSHGDCLQILQTAFAGVDVSAHRSLPHLETCELRRL 227          
BLAST of mRNA_L-digitata_M_contig101671.2.1 vs. uniprot
Match: Z9JPC2_9MICO (Fructose 1,6-bisphosphatase n=1 Tax=Brachybacterium phenoliresistens TaxID=396014 RepID=Z9JPC2_9MICO)

HSP 1 Score: 79.3 bits (194), Expect = 2.480e-15
Identity = 52/118 (44.07%), Postives = 67/118 (56.78%), Query Frame = 1
Query:    7 LRERGFGDFEGHDDGPS--YEKVWALDALSSRHGEFGVEPASEVAARTAAVVRRVLKEVSIRRRFYTGDGQPFPPGPSAVVLVSHGDALQLLQCLLAGRPLEQHRSLPHLENCGVRAL 354
            LRER FG F   D+GP+  Y+ +WA DA  +  GE GVE   EVAAR  AV    L+E   R            PG + VVLV+HGD LQ+L  + +GRP  +HR+L HL N  +R +
Sbjct:   87 LRERCFGTF---DEGPATAYDGIWAADASGAHPGE-GVESVEEVAARAMAV----LEEARAR------------PGQAPVVLVAHGDVLQILLAVASGRPAREHRALAHLGNAELREI 184          
BLAST of mRNA_L-digitata_M_contig101671.2.1 vs. uniprot
Match: A0A2N7U5J8_9GAMM (Histidine phosphatase family protein n=1 Tax=Halomonas endophytica TaxID=2033802 RepID=A0A2N7U5J8_9GAMM)

HSP 1 Score: 78.6 bits (192), Expect = 2.700e-15
Identity = 50/116 (43.10%), Postives = 61/116 (52.59%), Query Frame = 1
Query:    7 LRERGFGDFEGHDDGPSYEKVWALDALSSRHGEFGVEPASEVAARTAAVVRRVLKEVSIRRRFYTGDGQPFPPGPSAVVLVSHGDALQLLQCLLAGRPLEQHRSLPHLENCGVRAL 354
            LRER FG+FEG  D   Y +VWALDA S  H E  VE  + VAAR    ++ V+  +   RR  T            ++LVSHGD LQ+L   L GRPL QHR  P L    +  L
Sbjct:   97 LRERVFGEFEGQPD-EHYARVWALDAHSPEHREHAVESVASVAAR----MQEVIASLESERRGET------------ILLVSHGDPLQILLTALGGRPLSQHRDQPPLPPASITPL 195          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101671.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCP6_9PHAE2.240e-3580.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00140C23201.860e-1639.83histidine phosphatase family protein n=1 Tax=Pseud... [more]
A0A7S2DRX8_9EUKA4.890e-1640.17Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
UPI001D0B8B2A6.950e-1646.30histidine phosphatase family protein n=1 Tax=Halom... [more]
F0Y5Y4_AURAN8.630e-1645.38Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
UPI00166A5D181.400e-1546.30histidine phosphatase family protein n=1 Tax=Halom... [more]
R1BXL2_EMIHU1.510e-1542.86Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A8J2WYG9_9STRA1.540e-1545.76Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
Z9JPC2_9MICO2.480e-1544.07Fructose 1,6-bisphosphatase n=1 Tax=Brachybacteriu... [more]
A0A2N7U5J8_9GAMM2.700e-1543.10Histidine phosphatase family protein n=1 Tax=Halom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101671contigL-digitata_M_contig101671:465..896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009035624.1
PFAMsHis_Phos_1
Model size432
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.41e-16
EggNOG OGs28K5R@1|root,2QSKC@2759|Eukaryota
DescriptionHistidine phosphatase superfamily (branch 1)
Cds size432
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406621.5783107-CDS-L-digitata_M_contig101671:464..8961682406621.5783107-CDS-L-digitata_M_contig101671:464..896Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101671 465..896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101671.2.1prot_L-digitata_M_contig101671.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101671 465..896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101671.2.1

>prot_L-digitata_M_contig101671.2.1 ID=prot_L-digitata_M_contig101671.2.1|Name=mRNA_L-digitata_M_contig101671.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=144bp
RDLRERGFGDFEGHDDGPSYEKVWALDALSSRHGEFGVEPASEVAARTAA
VVRRVLKEVSIRRRFYTGDGQPFPPGPSAVVLVSHGDALQLLQCLLAGRP
LEQHRSLPHLENCGVRALRPPQEEGEGVGDEGEGGEEGRGGGGG
back to top

mRNA from alignment at L-digitata_M_contig101671:465..896+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101671.2.1 ID=mRNA_L-digitata_M_contig101671.2.1|Name=mRNA_L-digitata_M_contig101671.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=432bp|location=Sequence derived from alignment at L-digitata_M_contig101671:465..896+ (Laminaria digitata LdigPH10_18mv male)
AGAGATCTCCGCGAGCGAGGATTCGGCGACTTCGAAGGCCACGACGACGG CCCCAGCTACGAAAAGGTCTGGGCGCTCGACGCCCTAAGCTCCCGCCACG GCGAATTCGGGGTCGAGCCCGCCTCCGAGGTCGCCGCGCGAACAGCGGCG GTGGTGCGGCGGGTCCTGAAAGAGGTTTCCATTCGCAGGCGTTTTTACAC CGGGGATGGCCAGCCCTTTCCCCCCGGCCCTAGCGCCGTGGTTCTGGTGA GCCACGGAGACGCGCTGCAGCTGCTGCAGTGCTTGCTCGCCGGGCGGCCT CTGGAGCAGCACAGGTCGTTACCGCACTTGGAGAATTGCGGGGTTCGCGC TCTGCGACCGCCACAGGAAGAGGGGGAGGGGGTGGGGGACGAGGGGGAGG GAGGGGAGGAGGGGAGGGGGGGGGGGGGGGGG
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig101671:465..896+

>mRNA_L-digitata_M_contig101671.2.1 ID=mRNA_L-digitata_M_contig101671.2.1|Name=mRNA_L-digitata_M_contig101671.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=432bp|location=Sequence derived from alignment at L-digitata_M_contig101671:465..896+ (Laminaria digitata LdigPH10_18mv male)
AGAGATCTCCGCGAGCGAGGATTCGGCGACTTCGAAGGCCACGACGACGG
CCCCAGCTACGAAAAGGTCTGGGCGCTCGACGCCCTAAGCTCCCGCCACG
GCGAATTCGGGGTCGAGCCCGCCTCCGAGGTCGCCGCGCGAACAGCGGCG
GTGGTGCGGCGGGTCCTGAAAGAGGTTTCCATTCGCAGGCGTTTTTACAC
CGGGGATGGCCAGCCCTTTCCCCCCGGCCCTAGCGCCGTGGTTCTGGTGA
GCCACGGAGACGCGCTGCAGCTGCTGCAGTGCTTGCTCGCCGGGCGGCCT
CTGGAGCAGCACAGGTCGTTACCGCACTTGGAGAATTGCGGGGTTCGCGC
TCTGCGACCGCCACAGGAAGAGGGGGAGGGGGTGGGGGACGAGGGGGAGG
GAGGGGAGGAGGGGAGGGGGGGGGGGGGGGGG
back to top