mRNA_L-digitata_M_contig101596.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101596.1.1
Unique NamemRNA_L-digitata_M_contig101596.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig101596.1.1 vs. uniprot
Match: A0A6H5KT75_9PHAE (PAO protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT75_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.330e-9
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   13 MRTRRHRT--GVLC-DLGAGYVHGTIGNPLTDLARDAGIKLKQVRATDP 150
            MRTRRH T  G LC D GA Y+HGT+GNPL DLA+ AGI LKQV  ++P
Sbjct:    1 MRTRRHGTAGGGLCFDHGAAYIHGTLGNPLVDLAKGAGIGLKQVSESNP 49
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101596.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KT75_9PHAE1.330e-965.31PAO protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101596contigL-digitata_M_contig101596:135..293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FK53
PFAMsAmino_oxidase,Cellulase
Model size159
Max annot lvl2759|Eukaryota
KEGG rclassRC00053,RC00225
KEGG koko:K13366
KEGG ReactionR01914,R09076
KEGG Pathwayko00330,ko00410,ko01100,map00330,map00410,map01100
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.46e-08
EggNOG OGsCOG1231@1|root,KOG0685@1|root,KOG0029@2759|Eukaryota,KOG0685@2759|Eukaryota
EC1.5.3.14,1.5.3.16
Descriptionpositive regulation of spermidine biosynthetic process
Cds size147
COG categoryT
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406620.5644186-UTR-L-digitata_M_contig101596:134..1461682406620.5644186-UTR-L-digitata_M_contig101596:134..146Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig101596 135..146 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406620.5756423-CDS-L-digitata_M_contig101596:146..2931682406620.5756423-CDS-L-digitata_M_contig101596:146..293Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101596 147..293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101596.1.1prot_L-digitata_M_contig101596.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101596 147..293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101596.1.1

>prot_L-digitata_M_contig101596.1.1 ID=prot_L-digitata_M_contig101596.1.1|Name=mRNA_L-digitata_M_contig101596.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=49bp
MRTRRHRTGVLCDLGAGYVHGTIGNPLTDLARDAGIKLKQVRATDPLQ*
back to top

mRNA from alignment at L-digitata_M_contig101596:135..293+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101596.1.1 ID=mRNA_L-digitata_M_contig101596.1.1|Name=mRNA_L-digitata_M_contig101596.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=159bp|location=Sequence derived from alignment at L-digitata_M_contig101596:135..293+ (Laminaria digitata LdigPH10_18mv male)
GGCTCTTGTCAGATGCGCACTCGGCGGCACCGGACAGGCGTCCTGTGCGA
CTTAGGGGCGGGGTACGTCCACGGCACGATCGGCAACCCTTTGACGGACT
TGGCCAGAGATGCTGGCATCAAGCTCAAGCAGGTACGCGCAACCGACCCA
CTGCAGTAG
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig101596:135..293+

>mRNA_L-digitata_M_contig101596.1.1 ID=mRNA_L-digitata_M_contig101596.1.1|Name=mRNA_L-digitata_M_contig101596.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=147bp|location=Sequence derived from alignment at L-digitata_M_contig101596:135..293+ (Laminaria digitata LdigPH10_18mv male)
ATGCGCACTCGGCGGCACCGGACAGGCGTCCTGTGCGACTTAGGGGCGGG
GTACGTCCACGGCACGATCGGCAACCCTTTGACGGACTTGGCCAGAGATG
CTGGCATCAAGCTCAAGCAGGTACGCGCAACCGACCCACTGCAGTAG
back to top