mRNA_L-digitata_M_contig101592.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101592.1.1
Unique NamemRNA_L-digitata_M_contig101592.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101592.1.1 vs. uniprot
Match: A0A3M1YAC1_9CHLR (Radical SAM protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1YAC1_9CHLR)

HSP 1 Score: 233 bits (595), Expect = 1.350e-69
Identity = 114/305 (37.38%), Postives = 183/305 (60.00%), Query Frame = 1
Query:    4 VIRGEGEVAILQLMEAFGLKPGQDDLPVTPSQEVLLDIMGVTIMDRDAQKAVAKDRPGSTSMDDLPSPAYDLVDLHRYVKEWKEVHGYASIQFMTSRGCPFSCAWCARPIFGRKYRQYSARRAAEEVKHLVDTYKIDHLWLFDDTFVVRRQWVEAFCDAIVELGVKVRWECLARVDLTDR-DLLERMKAAGVERINFGFESGSQRVLDRMKKGTTVDDARRVAKDMHELGISMGGYVLMGYPGEEWPDIQKTIDLLRDIQPVDYSTSVAMPMPGTDFFGLVQQMMHTDNKWEETDPDAVIWDAPY 915
            V+ GEGE  +++L+ +     G+   PV         I+GV              RP    +D+LP PA+DLVD+ RY   W   HGY S+  +T+RGCP+ C WCA+PI+G++Y  +S +R  E++  L   Y+ DH+W  DD   ++  W+EA+ D I +  +++ ++CL+R DL  R D +  +K AG   +  G ESGSQ++LD M+KGT V+  ++VA+ +H++GI +G ++  GYPGE   DI+KT+ L+RD QP D   SV+ P+PGT F+  V+  + T   W++++  A+++  P+
Sbjct:  132 VLIGEGEETLVELLNSLC---GRTQTPVN-------QILGVVTHTHPHPTR----RPVIRQLDELPMPAWDLVDVARYKSLWMTHHGYFSMNLVTTRGCPYHCNWCAKPIWGQRYNVHSPQRIVEQLLWLKQHYQPDHIWFADDILGLKPGWLEAYADLIEQHNIRIPFKCLSRADLLLRGDTINALKRAGCHTVWIGAESGSQKILDAMEKGTRVEQIQQVAQRLHQVGIKVGFFLQFGYPGETRTDIEKTLQLVRDAQPDDIGISVSYPLPGTKFYQRVKNQLGTQQNWQDSNDMAMLYHGPF 422          
BLAST of mRNA_L-digitata_M_contig101592.1.1 vs. uniprot
Match: A0A350WST7_9CHLR (Radical SAM protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A350WST7_9CHLR)

HSP 1 Score: 229 bits (585), Expect = 1.990e-68
Identity = 102/249 (40.96%), Postives = 151/249 (60.64%), Query Frame = 1
Query:  169 RPGSTSMDDLPSPAYDLVDLHRYVKEWKEVHGYASIQFMTSRGCPFSCAWCARPIFGRKYRQYSARRAAEEVKHLVDTYKIDHLWLFDDTFVVRRQWVEAFCDAIVELGVKVRWECLARVDLTDRDLLERMKAAGVERINFGFESGSQRVLDRMKKGTTVDDARRVAKDMHELGISMGGYVLMGYPGEEWPDIQKTIDLLRDIQPVDYSTSVAMPMPGTDFFGLVQQMMHTDNKWEETDPDAVIWDAPY 915
            RP    +D LP PA+DLVD+ +Y   W E HGY S+  +T+RGCP+ C WCA+PI+G++Y   S    A E+K L + +  DH+W  DD F +R  WVE F D + E+   + ++CL R DL        +  AG + +  G ESGSQ++LD M KG  V+D  R A+ +H+ GI +G ++  GYPGE W D+QKT+ ++R+ QP D   SV+ P+PGT FF  V+  +     W ++D  A+++  P+
Sbjct:  167 RPDIKDLDSLPFPAWDLVDIKKYKTIWYERHGYFSMNMVTTRGCPYHCNWCAKPIWGQRYNSRSPENVAAEMKWLKENFAPDHIWFADDIFGLRPNWVERFADLLTEMDAIIPFKCLKRADLVTGKTASALAKAGCKTVWVGAESGSQKILDAMDKGDKVEDIYRAAERLHKQGIEIGFFLQFGYPGETWDDVQKTLKMVRECQPDDIGISVSYPLPGTKFFERVKMELGEKQNWVDSDDLAMLYRGPF 415          
BLAST of mRNA_L-digitata_M_contig101592.1.1 vs. uniprot
Match: A0A350G0L8_9CHLR (Radical SAM protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A350G0L8_9CHLR)

HSP 1 Score: 229 bits (583), Expect = 3.410e-68
Identity = 109/298 (36.58%), Postives = 171/298 (57.38%), Query Frame = 1
Query:   58 LKPGQDDLPVTPSQEVLLDIMGVTIMDRDAQKAVA---------KDRPGSTSMDDLPSPAYDLVDLHRYVKEWKEVHGYASIQFMTSRGCPFSCAWCARPIFGRKYRQYSARRAAEEVKHLVDTYKIDHLWLFDDTFVVRRQWVEAFCDAIVELGVKVRWECLARVDLTDRDLLERMKAAGVERINFGFESGSQRVLDRMKKGTTVDDARRVAKDMHELGISMGGYVLMGYPGEEWPDIQKTIDLLRDIQPVDYSTSVAMPMPGTDFFGLVQQMMHTDNKWEETDPDAVIWDAPYGRG 924
            L+ G D   +   +E LL+++      R+A + +            RP  T +D LP PA+DLVD+ +Y K W E HGY S+  +T+RGCP+ C WCA+PI+G++Y   S    A E+K L  T+  DH+W  DD   ++ +W+E F D ++E    + ++CL R DL +      +  AG + +  G ESGSQ++LD M+KG  V+D  R AK + E GI +G ++  GYPGE W D+QKT+ ++R+  P D   SV+ P+PGT F+  V+  +     W +++  A+++  P+  G
Sbjct:  121 LEHGTDYCLLGEGEETLLELLNQLSAGREAGQVIGLASSKTIHPSRRPDITDLDKLPFPAWDLVDVEKYKKIWVERHGYFSMNMVTTRGCPYHCNWCAKPIWGQRYNSRSPENVAAEMKWLKVTHAPDHIWFADDILGLKPKWIEYFADLLLETDAVIPFKCLQRADLVNEKTASALAKAGCKTVWIGAESGSQKILDAMEKGDKVEDIYRAAKLLRENGIEVGFFLQFGYPGETWEDVQKTLKMVRECMPDDIGISVSYPLPGTKFYERVKLELGEKQNWIDSEDLAMLYRGPFPTG 418          
BLAST of mRNA_L-digitata_M_contig101592.1.1 vs. uniprot
Match: UPI001ACFAC4A (Uncharacterized protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=UPI001ACFAC4A)

HSP 1 Score: 226 bits (576), Expect = 5.790e-68
Identity = 109/305 (35.74%), Postives = 176/305 (57.70%), Query Frame = 1
Query:    4 VIRGEGEVAILQLMEAFGLKPGQDDLPVTPSQEVLLDIMGVTIMDRDAQKAVAKDRPGSTSMDDLPSPAYDLVDLHRYVKEWKEVHGYASIQFMTSRGCPFSCAWCARPIFGRKYRQYSARRAAEEVKHLVDTYKIDHLWLFDDTFVVRRQWVEAFCDAIVELGVKVRWECLARVDLT-DRDLLERMKAAGVERINFGFESGSQRVLDRMKKGTTVDDARRVAKDMHELGISMGGYVLMGYPGEEWPDIQKTIDLLRDIQPVDYSTSVAMPMPGTDFFGLVQQMMHTDNKWEETDPDAVIWDAPY 915
            VIRGEGE+ + +LM          D+    +   L DI G+  +D + +      R    ++D+LP PA++LVD+ +Y   W E HGY SI  +T+RGCP+ C WCA+PI+G++Y   S +  A+E+K L + +  DH+W  DD   ++ +W++ F D I  L ++  ++CL+R DL    D ++ M  AG + I  G ESGSQ++LD M KGT V+      + +   GI +G ++  GYPGE   DI+ T+ ++R++ P D   SV+ P+PGT F+  V+Q +     W ++   A+++  P+
Sbjct:  102 VIRGEGELTLHELM----------DMLTEKNSTGLADIQGLAYLDDEGKPVTTLPRAVIKNLDELPMPAWELVDVEKYRHIWVERHGYYSINMVTTRGCPYHCNWCAKPIWGQRYNVRSPQNVAQELKWLKENFHPDHIWFADDIMGLKPRWIQEFADEIERLNIRTPFKCLSRADLLLVEDTIQAMHRAGCKTIWMGAESGSQKILDAMDKGTAVEQIYESRRKLAHEGIEVGFFLQFGYPGETREDIELTLKMVRELMPDDIGISVSYPLPGTKFYERVRQELDEKTNWTDSQDLAMLYQGPF 396          
BLAST of mRNA_L-digitata_M_contig101592.1.1 vs. uniprot
Match: A0A7C1EN49_9CHLR (B12-binding domain-containing radical SAM protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C1EN49_9CHLR)

HSP 1 Score: 227 bits (578), Expect = 1.890e-67
Identity = 114/304 (37.50%), Postives = 173/304 (56.91%), Query Frame = 1
Query:    4 VIRGEGEVAILQLMEAFGLKPGQDDLPVTPSQEVLLDIMGVTIMDRDAQKAVAKDRPGSTSMDDLPSPAYDLVDLHRYVKEWKEVHGYASIQFMTSRGCPFSCAWCARPIFGRKYRQYSARRAAEEVKHLVDTYKIDHLWLFDDTFVVRRQWVEAFCDAIVELGVKVRWECLARVDLTDRDLLERMKAAGVERINFGFESGSQRVLDRMKKGTTVDDARRVAKDMHELGISMGGYVLMGYPGEEWPDIQKTIDLLRDIQPVDYSTSVAMPMPGTDFFGLVQQMMHTDNKWEETDPDAVIWDAPY 915
            V+ GEGE  + +L++A   +  QD  P T    +L  +  +T+         A  RP   ++D LP PA+DLVD+ RY K W+E HGY S+  +T+RGCP+ C WCA+PI+G++Y   S      E+K L   +  DHLW  DD   ++  W+E F   +   G+++ ++CL R DL +      + AAG   + FG ESGSQ++LD M+KG TV D +R  + + E GI +G ++  GYPGE W DI  T  ++R  QP D   SV+ P+PGT F+  V+  +     W ++D  A+++  P+
Sbjct:  128 VLLGEGEETLGELLDALTGRSTQD--PNT----ILGHVSRLTLH--------ATRRPDIKNLDALPLPAWDLVDMARYQKIWRERHGYFSLNLVTTRGCPYHCNWCAKPIWGQRYNSRSPENVVAELKWLAQKFAPDHLWFMDDILGLKPGWLERFAGLLKAEGLRIPFKCLQRADLVNERTAAALAAAGCRTVWFGAESGSQKILDAMEKGQTVGDIQRATRLLREQGIEVGFFLQFGYPGEAWADITLTRQMVRACQPDDIGVSVSYPLPGTKFYERVKLELGDKQNWRDSDDLAMLYQGPF 417          
BLAST of mRNA_L-digitata_M_contig101592.1.1 vs. uniprot
Match: A0A3M1N387_9CHLR (Radical SAM protein n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A3M1N387_9CHLR)

HSP 1 Score: 227 bits (578), Expect = 3.550e-67
Identity = 113/302 (37.42%), Postives = 180/302 (59.60%), Query Frame = 1
Query:    4 VIRGEGEVAILQLMEAFGLKPGQDDLPVTPSQEVLLDIMGVTIMDRDAQKAVAKDRPGSTSMDDLPSPAYDLVDLHRYVKEWKEVHGYASIQFMTSRGCPFSCAWCARPIFGRKYRQYSARRAAEEVKHLVDTYKIDHLWLFDDTFVVRRQWVEAFCDAIVELGVKVRWECLARVDLTDRDLLERMKAAGVERINFGFESGSQRVLDRMKKGTTVDDARRVAKDMHELGISMGGYVLMGYPGEEWPDIQKTIDLLRDIQPVDYSTSVAMPMPGTDFFGLVQQ-MMHTDNKWEETDPDAVIWD 906
            ++  EGE  I++LM+    + G D L        L  I G+  +D   Q      RP  T++D +P PA DLVD   Y K W E HGY S+  + +RGCP++C WC + IFGR YR  SA  AAEE++ + + Y  D + + DD   V R+W+  +   ++     + +ECL+RV+L D  LL+ ++  G  +I FG ESGSQ+VL+ MKKGT V+   R A+   ++GI +  ++++GYPGEE  D+Q ++ LLR+  P  +ST++A P+PGT+F+  V++ ++H  + W  T  + ++++
Sbjct:  134 IVWDEGEATIVELMDHLTGRHGADQLN-------LRAIRGLRFLDEQGQIVSTPPRPAITNLDSIPFPARDLVDFEAYKKHWTERHGYWSMSMINTRGCPYACTWCQKGIFGRSYRSRSAANAAEEMRLIKEQYNPDQIRVVDDITGVDRKWIFEWRAEVLRRDAAIPFECLSRVNLVDVPLLKALQEIGCRKIYFGAESGSQKVLNAMKKGTKVEQIYRAAEACRQVGIHVYFFMMVGYPGEELEDLQASVKLLREALPDSFSTTIAYPLPGTEFYQQVRERILHDGDDWAFTAENKLLFE 428          
BLAST of mRNA_L-digitata_M_contig101592.1.1 vs. uniprot
Match: A0A6A0IJT7_9BACT (Radical SAM protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6A0IJT7_9BACT)

HSP 1 Score: 226 bits (577), Expect = 3.830e-67
Identity = 113/305 (37.05%), Postives = 169/305 (55.41%), Query Frame = 1
Query:    4 VIRGEGEVAILQLMEAFGLKPGQDDLPVTPSQEVLLDIMGVTIMDRDAQK-AVAKDRPGSTSMDDLPSPAYDLVDLHRYVKEWKEVHGYASIQFMTSRGCPFSCAWCARPIFGRKYRQYSARRAAEEVKHLVDTYKIDHLWLFDDTFVVRRQWVEAFCDAIVELGVKVRWECLARVDLTDRDLLERMKAAGVERINFGFESGSQRVLDRMKKGTTVDDARRVAKDMHELGISMGGYVLMGYPGEEWPDIQKTIDLLRDIQPVDYSTSVAMPMPGTDFFGLVQQMMHTDNKWEETDPDAVIWDAPY 915
            V+ GE E   L+L EA+   P  D          L ++ G+ + +  A+       RP    +D LP PA+DLVD  RY + W   HG  S    T+RGCP+ C WCA+P++G +Y Q S    AEE++ L +    DH+W  DD F +  +W+E+F +A+   G ++ +   +RVDL     +E ++ AG E +  G ESGSQ +LD M KGTT+   R   + + E GI    ++ +GYPGEEW +++KT DL+R+ +P D   SVA P+PGT FF  V+  +     W ++D  A+I+   Y
Sbjct:  131 VVLGEAEETFLELAEAWSRDPRAD----------LSEVFGLAVPNGSAEPFRRTPPRPFVEGLDALPFPAWDLVDADRYRRAWTGAHGRLSWNMATTRGCPYRCNWCAKPLYGTRYAQRSPGNVAEEMRLLSERVGPDHVWFADDIFGLSPRWIESFAEAVASRGARIPFTIQSRVDLMTPSAVEALRHAGCEEVWMGVESGSQAILDAMDKGTTLSQVRGATRLLKESGIRASWFLQLGYPGEEWHEVEKTRDLIREERPDDVGVSVAYPLPGTLFFDRVKDQLGAQTNWSDSDDLAMIFHGTY 425          
BLAST of mRNA_L-digitata_M_contig101592.1.1 vs. uniprot
Match: A0A800IIF8_9BACT (B12-binding domain-containing radical SAM protein n=2 Tax=FCB group TaxID=1783270 RepID=A0A800IIF8_9BACT)

HSP 1 Score: 225 bits (574), Expect = 1.020e-66
Identity = 114/304 (37.50%), Postives = 172/304 (56.58%), Query Frame = 1
Query:    4 VIRGEGEVAILQLMEAFGLKPGQDDLPVTPSQEVLLDIMGVTIMDRDAQKAVAKDRPGSTSMDDLPSPAYDLVDLHRYVKEWKEVHGYASIQFMTSRGCPFSCAWCARPIFGRKYRQYSARRAAEEVKHLVDTYKIDHLWLFDDTFVVRRQWVEAFCDAIVELGVKVRWECLARVDLTDRDLLERMKAAGVERINFGFESGSQRVLDRMKKGTTVDDARRVAKDMHELGISMGGYVLMGYPGEEWPDIQKTIDLLRDIQPVDYSTSVAMPMPGTDFFGLVQQMMHTDNKWEETDPDAVIWDAPY 915
            ++ GEGE  + +L+ +   +          S+  + D+ G+     D  + +   R   T +D+LP+PA DL D+  Y   W+  HGY S   +T+RGCPF C WCA+PI+G +Y  +S    A ++K L DT   DH+W  DD F ++  WVE+F   + EL  K  ++  ARVDL D  ++  +K AG E    G ESGSQ +LD M KGTTV+   + A+ +H+ GI +G ++  GYPGE   DI+KTI +L+  +P D   SV+ P+PGT F+  VQQ +     W ++D  A+++   Y
Sbjct:  128 ILVGEGEHTLGELLNSLSGR----------SKTAIEDVAGLATRQDDTIR-ITPPRGFLTDLDELPAPARDLADMSAYEAAWRSRHGYFSTNMVTTRGCPFKCNWCAKPIYGNRYNSHSPAYVAHDLKALKDTCHPDHIWFADDIFGLKPDWVESFSRHVEELQCKTPFKIQARVDLLDEPVVAALKRAGCEMAWVGAESGSQMILDAMDKGTTVEQIHKAAQRLHDHGIKVGFFLQFGYPGETREDIEKTIHMLKKGRPDDIGISVSYPLPGTKFYEQVQQDLVDKTNWTDSDDLALMFQGTY 420          
BLAST of mRNA_L-digitata_M_contig101592.1.1 vs. uniprot
Match: D1CAH0_SPHTD (Radical SAM domain protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) TaxID=479434 RepID=D1CAH0_SPHTD)

HSP 1 Score: 226 bits (575), Expect = 1.610e-66
Identity = 118/307 (38.44%), Postives = 175/307 (57.00%), Query Frame = 1
Query:    4 VIRGEGEVAILQLMEAFGLKPGQDDLPVTPSQEVLLDIMGVTIMDRDAQKAVAKD--RPGSTSMDDLPSPAYDLVDLHRYVKEWKEVHGYASIQFMTSRGCPFSCAWCARPIFGRKYRQYSARRAAEEVKHLVDTYKIDHLWLFDDTFVVRRQWVEAFCDAIVELGVKVRWECLARVDLTDR-DLLERMKAAGVERINFGFESGSQRVLDRMKKGTTVDDARRVAKDMHELGISMGGYVLMGYPGEEWPDIQKTIDLLRDIQPVDYSTSVAMPMPGTDFFGLVQQMMHTDNKWEETDPDAVIWDAPY 915
            V+ GEGE  + +L++      G+ D P       L  I+G+   D      V +   RP    +D LP PA+DLVD+ RY   W   HGY S+  +T+RGCPF C WCA+PI+G++Y   S    A E+K L D Y+ DH+W  DD   ++  W++ + D +  LGV+  ++ L RVDL  R D +E +  AG + +  G ESGSQR+LD M+KGT V+    VA+ +H  GI +G ++  GYPGE   DI+ T+ ++RD QP D   SVA P+PGT F   V+  +     W +++  A+++  P+
Sbjct:  128 VLLGEGEYTLAELLDHL---TGRSDQP-------LEGILGLAYPDPTQPDGVKRTPRRPDIRDLDALPFPAWDLVDVPRYRDIWLRRHGYFSMNMVTTRGCPFHCNWCAKPIWGQRYNARSPENVAAELKWLRDNYQPDHIWFVDDIMGLKPGWLQRYADEVERLGVRTPFKSLHRVDLLLRGDTIEALARAGAQIVWVGAESGSQRILDAMEKGTKVEQIVEVARRLHAAGIQVGFFLQFGYPGETRADIELTLQMVRDCQPDDIGVSVAYPLPGTPFHERVKDQLGVKQNWLDSNDLAMLYRGPF 424          
BLAST of mRNA_L-digitata_M_contig101592.1.1 vs. uniprot
Match: A0A3M1GZ12_9CHLR (Radical SAM protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1GZ12_9CHLR)

HSP 1 Score: 225 bits (573), Expect = 1.820e-66
Identity = 114/291 (39.18%), Postives = 172/291 (59.11%), Query Frame = 1
Query:    4 VIRGEGEVAILQLMEAFGLKPGQDDLPVTPSQEVLLDIMGVTIMDRDAQKAVAKDRPGSTSMDDLPSPAYDLVDLHRYVKEWKEVHGYASIQFMTSRGCPFSCAWCARPIFGRKYRQYSARRAAEEVKHLVDTYKIDHLWLFDDTFVVRRQWVEAFCDAIVELGVKVRWECLARVDLTDRDLLERMKAAGVERINFGFESGSQRVLDRMKKGTTVDDARRVAKDMHELGISMGGYVLMGYPGEEWPDIQKTIDLLRDIQPVDYSTSVAMPMPGTDFFGLVQQMMHTDNKWE 876
            V+  EGE+ + +LM AF +  GQ D P       L +I G+     D +      RP   ++D LP PA DLVD+  Y + W+  HGY S+  + +RGCP+ CAWC R +FGR +R  SA  +A E++ + +TY  DHL + DD   +R+QWV+ + D I+     + +ECL RV+L   ++L  +K AG ++I FG ESGSQ+VLD M KG  V    R A+   + GI    ++++GYPGE W D+Q ++ LLR  +P ++ST++A P+PGT F+  V+  +     W+
Sbjct:  129 VVHDEGELTLRELM-AFLV--GQGDHP-----PALAEIAGLRRRGPDGRITATAPRPRIDNLDALPFPARDLVDMQAYREAWRRAHGYWSLSMINTRGCPYDCAWCQRAVFGRLFRTRSAASSAAEMQFIKETYAPDHLRIVDDITGIRKQWVQQWRDEILARDAAIPFECLTRVNLATPEMLAALKEAGCQKIYFGAESGSQKVLDAMNKGIKVAQIDRAAELCRQFGIKTYFFMMVGYPGETWEDLQASVQLLRRTRPDEFSTTIAYPLPGTKFYEQVRDRLLFSGDWK 411          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101592.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3M1YAC1_9CHLR1.350e-6937.38Radical SAM protein n=1 Tax=Chloroflexi bacterium ... [more]
A0A350WST7_9CHLR1.990e-6840.96Radical SAM protein n=1 Tax=Anaerolineae bacterium... [more]
A0A350G0L8_9CHLR3.410e-6836.58Radical SAM protein n=1 Tax=Anaerolineae bacterium... [more]
UPI001ACFAC4A5.790e-6835.74Uncharacterized protein n=1 Tax=Anaerolineae bacte... [more]
A0A7C1EN49_9CHLR1.890e-6737.50B12-binding domain-containing radical SAM protein ... [more]
A0A3M1N387_9CHLR3.550e-6737.42Radical SAM protein n=2 Tax=Chloroflexi TaxID=2007... [more]
A0A6A0IJT7_9BACT3.830e-6737.05Radical SAM protein n=1 Tax=Acidobacteria bacteriu... [more]
A0A800IIF8_9BACT1.020e-6637.50B12-binding domain-containing radical SAM protein ... [more]
D1CAH0_SPHTD1.610e-6638.44Radical SAM domain protein n=1 Tax=Sphaerobacter t... [more]
A0A3M1GZ12_9CHLR1.820e-6639.18Radical SAM protein n=1 Tax=Chloroflexi bacterium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101592contigL-digitata_M_contig101592:2..925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog479434.Sthe_3413
PFAMsB12-binding,Radical_SAM
Model size924
Max annot lvl200795|Chloroflexi
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.64e-67
EggNOG OGsCOG1032@1|root,COG1032@2|Bacteria,2G6ZI@200795|Chloroflexi
DescriptionSMART Elongator protein 3 MiaB NifB
Cds size924
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406620.5238569-CDS-L-digitata_M_contig101592:1..9251682406620.5238569-CDS-L-digitata_M_contig101592:1..925Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101592 2..925 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101592.1.1prot_L-digitata_M_contig101592.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101592 2..925 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101592.1.1

>prot_L-digitata_M_contig101592.1.1 ID=prot_L-digitata_M_contig101592.1.1|Name=mRNA_L-digitata_M_contig101592.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=308bp
VVIRGEGEVAILQLMEAFGLKPGQDDLPVTPSQEVLLDIMGVTIMDRDAQ
KAVAKDRPGSTSMDDLPSPAYDLVDLHRYVKEWKEVHGYASIQFMTSRGC
PFSCAWCARPIFGRKYRQYSARRAAEEVKHLVDTYKIDHLWLFDDTFVVR
RQWVEAFCDAIVELGVKVRWECLARVDLTDRDLLERMKAAGVERINFGFE
SGSQRVLDRMKKGTTVDDARRVAKDMHELGISMGGYVLMGYPGEEWPDIQ
KTIDLLRDIQPVDYSTSVAMPMPGTDFFGLVQQMMHTDNKWEETDPDAVI
WDAPYGRG
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mRNA from alignment at L-digitata_M_contig101592:2..925-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101592.1.1 ID=mRNA_L-digitata_M_contig101592.1.1|Name=mRNA_L-digitata_M_contig101592.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=924bp|location=Sequence derived from alignment at L-digitata_M_contig101592:2..925- (Laminaria digitata LdigPH10_18mv male)
GTGGTCATTCGAGGCGAGGGCGAGGTCGCCATTCTGCAGCTGATGGAGGC CTTTGGGCTCAAGCCTGGGCAAGATGACTTGCCGGTGACCCCGTCGCAAG AGGTCTTGCTCGACATCATGGGTGTCACCATCATGGACAGGGACGCCCAA AAGGCCGTCGCGAAGGACCGGCCCGGGTCGACCTCTATGGATGATTTGCC CTCTCCAGCCTATGACCTGGTGGACCTGCACCGCTACGTCAAAGAGTGGA AAGAGGTGCACGGCTACGCCTCCATTCAGTTCATGACCTCGAGGGGCTGT CCCTTCTCGTGTGCATGGTGCGCTCGGCCCATCTTCGGCCGAAAGTACCG ACAGTACTCGGCGCGCCGCGCCGCCGAGGAGGTCAAGCACCTCGTCGATA CCTATAAGATCGACCACCTGTGGCTCTTCGATGACACCTTCGTGGTGCGC AGGCAGTGGGTAGAGGCCTTCTGTGACGCGATCGTCGAGCTGGGTGTCAA GGTACGGTGGGAGTGCCTCGCCCGCGTTGACCTGACGGACCGAGACTTGC TGGAACGCATGAAGGCGGCCGGCGTAGAGCGCATCAACTTTGGCTTCGAG AGCGGCTCTCAGAGGGTCTTGGACCGCATGAAGAAGGGCACCACGGTGGA TGATGCAAGGCGGGTTGCCAAGGATATGCATGAGCTGGGCATATCCATGG GCGGCTACGTGCTCATGGGCTATCCCGGCGAGGAGTGGCCCGATATTCAA AAGACTATCGACCTGCTTCGAGACATCCAGCCTGTGGACTACTCGACCTC GGTCGCGATGCCGATGCCGGGCACGGACTTCTTTGGGCTCGTGCAGCAGA TGATGCACACCGACAATAAGTGGGAAGAGACCGACCCTGACGCGGTGATT TGGGACGCTCCCTATGGGCGCGGC
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Coding sequence (CDS) from alignment at L-digitata_M_contig101592:2..925-

>mRNA_L-digitata_M_contig101592.1.1 ID=mRNA_L-digitata_M_contig101592.1.1|Name=mRNA_L-digitata_M_contig101592.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=924bp|location=Sequence derived from alignment at L-digitata_M_contig101592:2..925- (Laminaria digitata LdigPH10_18mv male)
GTGGTCATTCGAGGCGAGGGCGAGGTCGCCATTCTGCAGCTGATGGAGGC
CTTTGGGCTCAAGCCTGGGCAAGATGACTTGCCGGTGACCCCGTCGCAAG
AGGTCTTGCTCGACATCATGGGTGTCACCATCATGGACAGGGACGCCCAA
AAGGCCGTCGCGAAGGACCGGCCCGGGTCGACCTCTATGGATGATTTGCC
CTCTCCAGCCTATGACCTGGTGGACCTGCACCGCTACGTCAAAGAGTGGA
AAGAGGTGCACGGCTACGCCTCCATTCAGTTCATGACCTCGAGGGGCTGT
CCCTTCTCGTGTGCATGGTGCGCTCGGCCCATCTTCGGCCGAAAGTACCG
ACAGTACTCGGCGCGCCGCGCCGCCGAGGAGGTCAAGCACCTCGTCGATA
CCTATAAGATCGACCACCTGTGGCTCTTCGATGACACCTTCGTGGTGCGC
AGGCAGTGGGTAGAGGCCTTCTGTGACGCGATCGTCGAGCTGGGTGTCAA
GGTACGGTGGGAGTGCCTCGCCCGCGTTGACCTGACGGACCGAGACTTGC
TGGAACGCATGAAGGCGGCCGGCGTAGAGCGCATCAACTTTGGCTTCGAG
AGCGGCTCTCAGAGGGTCTTGGACCGCATGAAGAAGGGCACCACGGTGGA
TGATGCAAGGCGGGTTGCCAAGGATATGCATGAGCTGGGCATATCCATGG
GCGGCTACGTGCTCATGGGCTATCCCGGCGAGGAGTGGCCCGATATTCAA
AAGACTATCGACCTGCTTCGAGACATCCAGCCTGTGGACTACTCGACCTC
GGTCGCGATGCCGATGCCGGGCACGGACTTCTTTGGGCTCGTGCAGCAGA
TGATGCACACCGACAATAAGTGGGAAGAGACCGACCCTGACGCGGTGATT
TGGGACGCTCCCTATGGGCGCGGC
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