mRNA_L-digitata_M_contig10159.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10159.2.1
Unique NamemRNA_L-digitata_M_contig10159.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10159.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10159contigL-digitata_M_contig10159:1075..2010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size232
Hectar predicted targeting categoryother localisation
Exons2
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406620.3972228-CDS-L-digitata_M_contig10159:1074..12691682406620.3972228-CDS-L-digitata_M_contig10159:1074..1269Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10159 1075..1269 +
1682406620.4080684-CDS-L-digitata_M_contig10159:1973..20091682406620.4080684-CDS-L-digitata_M_contig10159:1973..2009Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10159 1974..2009 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10159.2.1prot_L-digitata_M_contig10159.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10159 1075..2009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10159.2.1

>prot_L-digitata_M_contig10159.2.1 ID=prot_L-digitata_M_contig10159.2.1|Name=mRNA_L-digitata_M_contig10159.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=77bp
GQQFGITTRIGFVLKWFKGQYLSAAPTTVEQRELAKFDENRPALGMLNPR
RDKNAGMYRSGEGAEGLLCDPGSELRL
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mRNA from alignment at L-digitata_M_contig10159:1075..2010+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10159.2.1 ID=mRNA_L-digitata_M_contig10159.2.1|Name=mRNA_L-digitata_M_contig10159.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=936bp|location=Sequence derived from alignment at L-digitata_M_contig10159:1075..2010+ (Laminaria digitata LdigPH10_18mv male)
GGACAGCAATTTGGCATTACTACTCGTATAGGATTTGTTTTGAAGTGGTT
CAAGGGTCAGTATCTTTCAGCTGCACCTACTACTGTAGAGCAGCGTGAGT
TAGCAAAATTCGATGAAAATCGACCAGCGTTGGGAATGCTGAACCCTCGG
CGCGATAAAAATGCAGGCATGTACCGTAGTGGGGAGGGGGCAGAAGCGTC
NNNNNNNNNNATGAAAAAGAACAAAAAGAAAAAAAAAACAGCAGCGACAA
CCATTTAGGGTTGGATGGAGGCATTGATTTTTCTGGGATTTTTCGGACTT
AAAAACAGGGAAGAAAGCGGCCTAAAGCAGGTACACCTGGTCACTTGGAA
GTTCAAGGGTCAATATGCTTCAGTTACACCAATTCACGTCAGCCTTCTGG
CGTCAACTTTTTCATGTCAGCGCACGCCTTGGGTGCAACCGGTTATACAC
CCTGTTTACTTCATGCCAGCGGTACGCCCTGAGTCTAAACCGGTTCGCGG
CCGTAAGGCATGGCCTCAACTTGAGCGTGTGTAGCTCGCGTTATACGTCA
GACAGCGACTCAAAACTGGTGTGAGGCAGGCGCAGGGGGCAATTTGGTGA
GCGAAACCTTTGACCAAAACAACGGGAGACTTGGTCCGCTGGAACGGCTG
TCTGTGCGCGTTTAAGAAATATGACTGTACCCCAAACAAACGCGGCGTCC
AAGATCGGTGATGTTTTAGGCACACAATGACACGTTCGTATCGTCTGGTC
TTGACTCAAGACAGAAGTAGTGGTTGCCCGTTTCATGCTTGCAGGCGAAA
AGCACAGCTCTCTTACTAGAATAGCATCTATACTGCTATTTAAAAGCCTT
CTCGCGATAAGAATGAAGGCGCGTACCGTAGTGGGGAGGGGAGAGAAAGG
GCCTGCTTTGTGACCCCGGATCTGAGTTACGGCTAT
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Coding sequence (CDS) from alignment at L-digitata_M_contig10159:1075..2010+

>mRNA_L-digitata_M_contig10159.2.1 ID=mRNA_L-digitata_M_contig10159.2.1|Name=mRNA_L-digitata_M_contig10159.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=231bp|location=Sequence derived from alignment at L-digitata_M_contig10159:1075..2010+ (Laminaria digitata LdigPH10_18mv male)
GGACAGCAATTTGGCATTACTACTCGTATAGGATTTGTTTTGAAGTGGTT
CAAGGGTCAGTATCTTTCAGCTGCACCTACTACTGTAGAGCAGCGTGAGT
TAGCAAAATTCGATGAAAATCGACCAGCGTTGGGAATGCTGAACCCTCGG
CGCGATAAAAATGCAGGCATGTACCGTAGTGGGGAGGGGGCAGAAGGCCT
GCTTTGTGACCCCGGATCTGAGTTACGGCTA
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