mRNA_L-digitata_M_contig10156.5.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10156.5.1
Unique NamemRNA_L-digitata_M_contig10156.5.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10156.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10156contigL-digitata_M_contig10156:5186..5909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size724
Hectar predicted targeting categoryother localisation
Exons1
Cds size438
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406620.2055616-UTR-L-digitata_M_contig10156:5185..53541682406620.2055616-UTR-L-digitata_M_contig10156:5185..5354Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig10156 5186..5354 -
1682406620.2202404-UTR-L-digitata_M_contig10156:5792..59091682406620.2202404-UTR-L-digitata_M_contig10156:5792..5909Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig10156 5793..5909 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406620.212975-CDS-L-digitata_M_contig10156:5354..57921682406620.212975-CDS-L-digitata_M_contig10156:5354..5792Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10156 5355..5792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10156.5.1prot_L-digitata_M_contig10156.5.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10156 5355..5792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10156.5.1

>prot_L-digitata_M_contig10156.5.1 ID=prot_L-digitata_M_contig10156.5.1|Name=mRNA_L-digitata_M_contig10156.5.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=146bp
MKWAVGRHLYLATDTDRQADGWADGRADGRTDRRTYRRTGIPTGGQTDMR
IYTGGRTDGRTYRRSGIPTGGHTGGRAYRQPDIPTGGHTDRRTYGRVGIP
TCGHTDRRAYQQAGIPADGHTDGRAYRQAGIQTDGQSVNTVAWGI*
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mRNA from alignment at L-digitata_M_contig10156:5186..5909-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10156.5.1 ID=mRNA_L-digitata_M_contig10156.5.1|Name=mRNA_L-digitata_M_contig10156.5.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=724bp|location=Sequence derived from alignment at L-digitata_M_contig10156:5186..5909- (Laminaria digitata LdigPH10_18mv male)
GGGCGCACTCATTTGTTGCTTGCCTTAGTCATTGAACCATTGACCACGCA
TCCCCTTCTAGACGGAGCAGTGGAGAGATGGGGGTAGCGTGATAATTTTG
CGTGGGTATGCGTGCCAATGAAATGGGCGGTTGGGAGACATCTGTACCTT
GCGACAGACACAGACAGACAGGCGGACGGATGGGCGGACGGACGGGCGGA
CGGACGGACAGACAGACGGACATACCGACGGACGGGCATACCGACGGGCG
GACAGACAGACATGCGGATATATACAGGGGGACGTACCGACGGGCGGACA
TACCGGCGATCGGGCATACCGACGGGTGGACATACCGGCGGACGGGCATA
CCGACAACCGGACATACCGACGGGCGGGCATACCGACAGACGGACATACG
GGCGTGTGGGCATACCGACGTGCGGGCATACCGACAGACGGGCATACCAG
CAAGCGGGCATACCGGCAGACGGACATACCGACGGACGGGCATACCGACA
GGCGGGCATACAGACAGACGGACAGAGTGTTAATACTGTCGCATGGGGGA
TATAATTGACAGATAAGGCAGATGGAGATAGATACAGACAGATAGATGGA
TGGGAGGGATGGACAGGAGGACGGAAGGGAAGACGACCCCACGTTTTTCT
TTGGGGTGTTGGCCGTACCGAAGTCGCGGAAAGGCTGGGGCGGCCCAGCG
ACGCGTTGTTTGTTTGTTTTTACC
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Coding sequence (CDS) from alignment at L-digitata_M_contig10156:5186..5909-

>mRNA_L-digitata_M_contig10156.5.1 ID=mRNA_L-digitata_M_contig10156.5.1|Name=mRNA_L-digitata_M_contig10156.5.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=438bp|location=Sequence derived from alignment at L-digitata_M_contig10156:5186..5909- (Laminaria digitata LdigPH10_18mv male)
ATGAAATGGGCGGTTGGGAGACATCTGTACCTTGCGACAGACACAGACAG
ACAGGCGGACGGATGGGCGGACGGACGGGCGGACGGACGGACAGACAGAC
GGACATACCGACGGACGGGCATACCGACGGGCGGACAGACAGACATGCGG
ATATATACAGGGGGACGTACCGACGGGCGGACATACCGGCGATCGGGCAT
ACCGACGGGTGGACATACCGGCGGACGGGCATACCGACAACCGGACATAC
CGACGGGCGGGCATACCGACAGACGGACATACGGGCGTGTGGGCATACCG
ACGTGCGGGCATACCGACAGACGGGCATACCAGCAAGCGGGCATACCGGC
AGACGGACATACCGACGGACGGGCATACCGACAGGCGGGCATACAGACAG
ACGGACAGAGTGTTAATACTGTCGCATGGGGGATATAA
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