mRNA_L-digitata_M_contig101559.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101559.1.1
Unique NamemRNA_L-digitata_M_contig101559.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101559.1.1 vs. uniprot
Match: UPI001269C9D8 (SRPBCC family protein n=1 Tax=Pelagihabitans pacificus TaxID=2696054 RepID=UPI001269C9D8)

HSP 1 Score: 54.3 bits (129), Expect = 8.970e-8
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1
Query:    1 DYFIAIEHHIKTGDKVTKDNFKEIKKLYAK 90
            DYFIAIEHH KTG++VTK+NFK IKK YAK
Sbjct:  165 DYFIAIEHHAKTGERVTKENFKAIKKQYAK 194          
BLAST of mRNA_L-digitata_M_contig101559.1.1 vs. uniprot
Match: A0A316KWF8_9FLAO (Uncharacterized protein n=2 Tax=Muricauda koreensis TaxID=2201895 RepID=A0A316KWF8_9FLAO)

HSP 1 Score: 54.3 bits (129), Expect = 1.460e-7
Identity = 22/29 (75.86%), Postives = 28/29 (96.55%), Query Frame = 1
Query:    1 DYFIAIEHHIKTGDKVTKDNFKEIKKLYA 87
            DYFIAIEHH KTG+KVTK+NF+++KKLY+
Sbjct:  227 DYFIAIEHHAKTGEKVTKENFRKVKKLYS 255          
BLAST of mRNA_L-digitata_M_contig101559.1.1 vs. uniprot
Match: A0A4Q8QHV2_9FLAO (SRPBCC family protein n=1 Tax=Muricauda hymeniacidonis TaxID=2517819 RepID=A0A4Q8QHV2_9FLAO)

HSP 1 Score: 53.5 bits (127), Expect = 1.730e-7
Identity = 22/29 (75.86%), Postives = 28/29 (96.55%), Query Frame = 1
Query:    1 DYFIAIEHHIKTGDKVTKDNFKEIKKLYA 87
            DYFI+IEHH KTG+KVTK+NF++IKKLY+
Sbjct:  165 DYFISIEHHAKTGEKVTKENFRKIKKLYS 193          
BLAST of mRNA_L-digitata_M_contig101559.1.1 vs. uniprot
Match: A0A1E5SKA2_9BACT (Uncharacterized protein n=2 Tax=Roseivirga misakiensis TaxID=1563681 RepID=A0A1E5SKA2_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 4.760e-7
Identity = 23/32 (71.88%), Postives = 28/32 (87.50%), Query Frame = 1
Query:    1 DYFIAIEHHIKTGDKVTKDNFKEIKKLYAKRD 96
            DYFIAIEHH++TG+KVTK NFK+IKK   KR+
Sbjct:  157 DYFIAIEHHLRTGEKVTKTNFKQIKKEIKKRE 188          
BLAST of mRNA_L-digitata_M_contig101559.1.1 vs. uniprot
Match: A0A1E5SWL5_9BACT (Uncharacterized protein n=1 Tax=Roseivirga sp. 4D4 TaxID=1889784 RepID=A0A1E5SWL5_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 9.180e-7
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 1
Query:    1 DYFIAIEHHIKTGDKVTKDNFKEIKKLYAKRDTAA 105
            DYFIAIEHH+ TG+KVTK NFK+IKK    R+ +A
Sbjct:  156 DYFIAIEHHLSTGEKVTKTNFKQIKKQIKSRERSA 190          
BLAST of mRNA_L-digitata_M_contig101559.1.1 vs. uniprot
Match: A0A6L9E8Y7_9FLAO (Uncharacterized protein n=1 Tax=Poritiphilus flavus TaxID=2697053 RepID=A0A6L9E8Y7_9FLAO)

HSP 1 Score: 50.8 bits (120), Expect = 1.780e-6
Identity = 20/29 (68.97%), Postives = 27/29 (93.10%), Query Frame = 1
Query:    1 DYFIAIEHHIKTGDKVTKDNFKEIKKLYA 87
            DYFIA+EHH KTG+KVTK+NF++I+K Y+
Sbjct:  165 DYFIAVEHHAKTGEKVTKENFRKIRKKYS 193          
BLAST of mRNA_L-digitata_M_contig101559.1.1 vs. uniprot
Match: A0A6N6KM84_9BACT (SRPBCC family protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A6N6KM84_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 2.610e-6
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 1
Query:    1 DYFIAIEHHIKTGDKVTKDNFKEIKKLYAKR 93
            DYFIAIEHH+ TG+ VTK+NFK +K+ YA R
Sbjct:  168 DYFIAIEHHLSTGEDVTKENFKSVKRQYATR 198          
BLAST of mRNA_L-digitata_M_contig101559.1.1 vs. uniprot
Match: A0A315ZBN0_9BACT (Polyketide cyclase/dehydrase/lipid transport protein n=1 Tax=Sediminitomix flava TaxID=379075 RepID=A0A315ZBN0_9BACT)

HSP 1 Score: 48.9 bits (115), Expect = 1.050e-5
Identity = 21/26 (80.77%), Postives = 25/26 (96.15%), Query Frame = 1
Query:    1 DYFIAIEHHIKTGDKVTKDNFKEIKK 78
            DYFIA+E+HIKTG+KVTK+NFK IKK
Sbjct:  164 DYFIALEYHIKTGEKVTKENFKSIKK 189          
BLAST of mRNA_L-digitata_M_contig101559.1.1 vs. uniprot
Match: A0A7H5EXH5_9BACT (Uncharacterized protein n=2 Tax=Lewinella sp. W8 TaxID=2528208 RepID=A0A7H5EXH5_9BACT)

HSP 1 Score: 47.8 bits (112), Expect = 2.630e-5
Identity = 19/31 (61.29%), Postives = 28/31 (90.32%), Query Frame = 1
Query:    1 DYFIAIEHHIKTGDKVTKDNFKEIKKLYAKR 93
            DY IAIEH++ TG+ VTK+NF++IKK+YA++
Sbjct:  167 DYAIAIEHYVNTGEAVTKENFRQIKKVYARK 197          
BLAST of mRNA_L-digitata_M_contig101559.1.1 vs. uniprot
Match: UPI001ABC8047 (SRPBCC family protein n=1 Tax=Roseivirga sp. E12 TaxID=2819237 RepID=UPI001ABC8047)

HSP 1 Score: 47.4 bits (111), Expect = 3.110e-5
Identity = 19/26 (73.08%), Postives = 25/26 (96.15%), Query Frame = 1
Query:    1 DYFIAIEHHIKTGDKVTKDNFKEIKK 78
            DYFIAIEHH++T +KVTK+NFK++KK
Sbjct:  142 DYFIAIEHHLRTDEKVTKNNFKQVKK 167          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101559.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
UPI001269C9D88.970e-880.00SRPBCC family protein n=1 Tax=Pelagihabitans pacif... [more]
A0A316KWF8_9FLAO1.460e-775.86Uncharacterized protein n=2 Tax=Muricauda koreensi... [more]
A0A4Q8QHV2_9FLAO1.730e-775.86SRPBCC family protein n=1 Tax=Muricauda hymeniacid... [more]
A0A1E5SKA2_9BACT4.760e-771.88Uncharacterized protein n=2 Tax=Roseivirga misakie... [more]
A0A1E5SWL5_9BACT9.180e-765.71Uncharacterized protein n=1 Tax=Roseivirga sp. 4D4... [more]
A0A6L9E8Y7_9FLAO1.780e-668.97Uncharacterized protein n=1 Tax=Poritiphilus flavu... [more]
A0A6N6KM84_9BACT2.610e-667.74SRPBCC family protein n=1 Tax=Bacteroidetes bacter... [more]
A0A315ZBN0_9BACT1.050e-580.77Polyketide cyclase/dehydrase/lipid transport prote... [more]
A0A7H5EXH5_9BACT2.630e-561.29Uncharacterized protein n=2 Tax=Lewinella sp. W8 T... [more]
UPI001ABC80473.110e-573.08SRPBCC family protein n=1 Tax=Roseivirga sp. E12 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101559contigL-digitata_M_contig101559:3..113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size111
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size111
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406620.1836777-CDS-L-digitata_M_contig101559:2..1131682406620.1836777-CDS-L-digitata_M_contig101559:2..113Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101559 3..113 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101559.1.1prot_L-digitata_M_contig101559.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101559 3..113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101559.1.1

>prot_L-digitata_M_contig101559.1.1 ID=prot_L-digitata_M_contig101559.1.1|Name=mRNA_L-digitata_M_contig101559.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=37bp
DYFIAIEHHIKTGDKVTKDNFKEIKKLYAKRDTAAKN
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mRNA from alignment at L-digitata_M_contig101559:3..113+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101559.1.1 ID=mRNA_L-digitata_M_contig101559.1.1|Name=mRNA_L-digitata_M_contig101559.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=111bp|location=Sequence derived from alignment at L-digitata_M_contig101559:3..113+ (Laminaria digitata LdigPH10_18mv male)
GATTACTTCATAGCGATTGAGCATCATATCAAGACCGGTGATAAGGTGAC CAAGGACAACTTCAAAGAGATTAAGAAGCTCTACGCCAAGCGTGATACTG CTGCCAAAAAC
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Coding sequence (CDS) from alignment at L-digitata_M_contig101559:3..113+

>mRNA_L-digitata_M_contig101559.1.1 ID=mRNA_L-digitata_M_contig101559.1.1|Name=mRNA_L-digitata_M_contig101559.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=111bp|location=Sequence derived from alignment at L-digitata_M_contig101559:3..113+ (Laminaria digitata LdigPH10_18mv male)
GATTACTTCATAGCGATTGAGCATCATATCAAGACCGGTGATAAGGTGAC
CAAGGACAACTTCAAAGAGATTAAGAAGCTCTACGCCAAGCGTGATACTG
CTGCCAAAAAC
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