mRNA_L-digitata_M_contig101558.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig101558.1.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 1.510e-18 Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 1
Query: 1 DLEQRFITVVKVQPRLATAHAKLFTHVLGLLNHALGEHRQ-ERQSETPNSLLRATKWWYILPALLHSQDGRVTRRESFASVER 246
DL RF TV K++P LA+ HA+L TH L L+N L E R+ +S TP SLLRA K WY+LPALLHS DGR+TR+E + +++R
Sbjct: 345 DLTLRFETVKKIKPWLASDHARLQTHALNLVNKELAERRELPPRSGTPLSLLRAIKLWYLLPALLHSFDGRITRKERYKALKR 427
BLAST of mRNA_L-digitata_M_contig101558.1.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 6.720e-15 Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 1 DLEQRFITVVKVQPRLATAHAKLFTHVLGLLNHALGEHRQERQSE-TPNSLLRATKWWYILPALLHSQDGRVTRRESFASVER 246
DL RF TV KVQPR A+ HA+L THVL L+N L E + TP S +R K WY+LP +LHS DGR+ R++ + S++R
Sbjct: 175 DLSLRFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKLWYLLPGILHSFDGRIARKKRYNSLKR 257
BLAST of mRNA_L-digitata_M_contig101558.1.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 3.160e-14 Identity = 41/83 (49.40%), Postives = 53/83 (63.86%), Query Frame = 1
Query: 1 DLEQRFITVVKVQPRLATAHAKLFTHVLGLLNHALGEHRQERQSE-TPNSLLRATKWWYILPALLHSQDGRVTRRESFASVER 246
DL RF TV KVQPR A+ HA L THVL L+N L E + TP S +R K WY+LP +LHS DGR+ R++ + S++R
Sbjct: 196 DLSLRFQTVKKVQPRFASDHACLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKLWYLLPGILHSFDGRIARKKRYNSLKR 278
BLAST of mRNA_L-digitata_M_contig101558.1.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 4.300e-14 Identity = 40/83 (48.19%), Postives = 52/83 (62.65%), Query Frame = 1
Query: 1 DLEQRFITVVKVQPRLATAHAKLFTHVLGLLNHALGEHRQERQSE-TPNSLLRATKWWYILPALLHSQDGRVTRRESFASVER 246
DL RF TV KVQPR A+ HA+L THVL L+N L E + TP S +R K WY+LP +LH DGR+ R+ + S++R
Sbjct: 174 DLSLRFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKLWYLLPGILHFFDGRIARKHRYKSLKR 256
BLAST of mRNA_L-digitata_M_contig101558.1.1 vs. uniprot
Match: A0A6H5KA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA96_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 1.100e-13 Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 1
Query: 1 DLEQRFITVVKVQPRLATAHAKLFTHVLGLLNHALGEHRQERQSE-TPNSLLRATKWWYILPALLHSQDGRVTRRESF 231
DL RF TV KVQPR A+ HA+L THVL L+N L E + TP S +R K WY+LP +LHS DGR+ R++ +
Sbjct: 182 DLSLRFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKLWYLLPGILHSFDGRIARKKRY 259
BLAST of mRNA_L-digitata_M_contig101558.1.1 vs. uniprot
Match: A0A6H5KQQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ8_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 2.240e-12 Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 1
Query: 13 RFITVVKVQPRLATAHAKLFTHVLGLLNHALGEHRQERQSE-TPNSLLRATKWWYILPALLHSQDGRVTRRESFASVER 246
RF TV KVQPR A+ HA+L THVL L+N L E + TP S +R WY+LP +LHS DGR+ R++ S++R
Sbjct: 164 RFQTVKKVQPRYASDHARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVITLWYLLPGILHSFDGRIARKKRHKSLKR 242
BLAST of mRNA_L-digitata_M_contig101558.1.1 vs. uniprot
Match: A0A6H5JGW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW0_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 3.340e-12 Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 1
Query: 16 FITVVKVQPRLATAHAKLFTHVLGLLNHALGEHRQERQSE-TPNSLLRATKWWYILPALLHSQDGRVTRRESFASVER 246
F TV KVQPR A+ HA+L THVL L+N L E + P S +R K WY+LP +LHS DGR+ R++ + S++R
Sbjct: 250 FQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGAPLSTIRVIKRWYLLPGILHSFDGRIARKKRYNSLKR 327
BLAST of mRNA_L-digitata_M_contig101558.1.1 vs. uniprot
Match: A0A6H5KJS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS3_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 1.620e-11 Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 1
Query: 16 FITVVKVQPRLATAHAKLFTHVLGLLNHALGEHR-QERQSETPNSLLRATKWWYILPALLHSQDGRVTRRESFASVER 246
F TV KVQPR A+ HA+L THVL L+N L E + TP +R K WY+LP +LH DGR+ R++ + S++R
Sbjct: 354 FQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASLATGTPLPTIRVIKLWYLLPGILHFFDGRIARKKRYKSLKR 431
BLAST of mRNA_L-digitata_M_contig101558.1.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 2.120e-8 Identity = 33/67 (49.25%), Postives = 41/67 (61.19%), Query Frame = 1
Query: 1 DLEQRFITVVKVQPRLATAHAKLFTHVLGLLNHALGEHRQERQSE-TPNSLLRATKWWYILPALLHS 198
DL RF TV KVQPR A+ HA+L THVL L+N L E + TP S +R K WY+LP ++ S
Sbjct: 166 DLSLRFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKLWYLLPGVISS 232
BLAST of mRNA_L-digitata_M_contig101558.1.1 vs. uniprot
Match: A0A6H5JZK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZK3_9PHAE) HSP 1 Score: 58.2 bits (139), Expect = 3.790e-8 Identity = 32/62 (51.61%), Postives = 39/62 (62.90%), Query Frame = 1
Query: 1 DLEQRFITVVKVQPRLATAHAKLFTHVLGLLNHALGEHRQERQSE-TPNSLLRATKWWYILP 183
DL RF TV KVQPR A+ HA+L THVL L+N L E + TP S +R K+WY+LP
Sbjct: 166 DLSLRFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKFWYLLP 227 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101558.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig101558.1.1 >prot_L-digitata_M_contig101558.1.1 ID=prot_L-digitata_M_contig101558.1.1|Name=mRNA_L-digitata_M_contig101558.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=82bp DLEQRFITVVKVQPRLATAHAKLFTHVLGLLNHALGEHRQERQSETPNSLback to top mRNA from alignment at L-digitata_M_contig101558:598..843- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig101558.1.1 ID=mRNA_L-digitata_M_contig101558.1.1|Name=mRNA_L-digitata_M_contig101558.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=246bp|location=Sequence derived from alignment at L-digitata_M_contig101558:598..843- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig101558:598..843- >mRNA_L-digitata_M_contig101558.1.1 ID=mRNA_L-digitata_M_contig101558.1.1|Name=mRNA_L-digitata_M_contig101558.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=246bp|location=Sequence derived from alignment at L-digitata_M_contig101558:598..843- (Laminaria digitata LdigPH10_18mv male)back to top |