mRNA_L-digitata_M_contig101558.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101558.1.1
Unique NamemRNA_L-digitata_M_contig101558.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101558.1.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.510e-18
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    1 DLEQRFITVVKVQPRLATAHAKLFTHVLGLLNHALGEHRQ-ERQSETPNSLLRATKWWYILPALLHSQDGRVTRRESFASVER 246
            DL  RF TV K++P LA+ HA+L TH L L+N  L E R+   +S TP SLLRA K WY+LPALLHS DGR+TR+E + +++R
Sbjct:  345 DLTLRFETVKKIKPWLASDHARLQTHALNLVNKELAERRELPPRSGTPLSLLRAIKLWYLLPALLHSFDGRITRKERYKALKR 427          
BLAST of mRNA_L-digitata_M_contig101558.1.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 6.720e-15
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    1 DLEQRFITVVKVQPRLATAHAKLFTHVLGLLNHALGEHRQERQSE-TPNSLLRATKWWYILPALLHSQDGRVTRRESFASVER 246
            DL  RF TV KVQPR A+ HA+L THVL L+N  L E      +  TP S +R  K WY+LP +LHS DGR+ R++ + S++R
Sbjct:  175 DLSLRFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKLWYLLPGILHSFDGRIARKKRYNSLKR 257          
BLAST of mRNA_L-digitata_M_contig101558.1.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.160e-14
Identity = 41/83 (49.40%), Postives = 53/83 (63.86%), Query Frame = 1
Query:    1 DLEQRFITVVKVQPRLATAHAKLFTHVLGLLNHALGEHRQERQSE-TPNSLLRATKWWYILPALLHSQDGRVTRRESFASVER 246
            DL  RF TV KVQPR A+ HA L THVL L+N  L E      +  TP S +R  K WY+LP +LHS DGR+ R++ + S++R
Sbjct:  196 DLSLRFQTVKKVQPRFASDHACLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKLWYLLPGILHSFDGRIARKKRYNSLKR 278          
BLAST of mRNA_L-digitata_M_contig101558.1.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 4.300e-14
Identity = 40/83 (48.19%), Postives = 52/83 (62.65%), Query Frame = 1
Query:    1 DLEQRFITVVKVQPRLATAHAKLFTHVLGLLNHALGEHRQERQSE-TPNSLLRATKWWYILPALLHSQDGRVTRRESFASVER 246
            DL  RF TV KVQPR A+ HA+L THVL L+N  L E      +  TP S +R  K WY+LP +LH  DGR+ R+  + S++R
Sbjct:  174 DLSLRFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKLWYLLPGILHFFDGRIARKHRYKSLKR 256          
BLAST of mRNA_L-digitata_M_contig101558.1.1 vs. uniprot
Match: A0A6H5KA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA96_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.100e-13
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 1
Query:    1 DLEQRFITVVKVQPRLATAHAKLFTHVLGLLNHALGEHRQERQSE-TPNSLLRATKWWYILPALLHSQDGRVTRRESF 231
            DL  RF TV KVQPR A+ HA+L THVL L+N  L E      +  TP S +R  K WY+LP +LHS DGR+ R++ +
Sbjct:  182 DLSLRFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKLWYLLPGILHSFDGRIARKKRY 259          
BLAST of mRNA_L-digitata_M_contig101558.1.1 vs. uniprot
Match: A0A6H5KQQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ8_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.240e-12
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 1
Query:   13 RFITVVKVQPRLATAHAKLFTHVLGLLNHALGEHRQERQSE-TPNSLLRATKWWYILPALLHSQDGRVTRRESFASVER 246
            RF TV KVQPR A+ HA+L THVL L+N  L E      +  TP S +R    WY+LP +LHS DGR+ R++   S++R
Sbjct:  164 RFQTVKKVQPRYASDHARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVITLWYLLPGILHSFDGRIARKKRHKSLKR 242          
BLAST of mRNA_L-digitata_M_contig101558.1.1 vs. uniprot
Match: A0A6H5JGW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW0_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.340e-12
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   16 FITVVKVQPRLATAHAKLFTHVLGLLNHALGEHRQERQSE-TPNSLLRATKWWYILPALLHSQDGRVTRRESFASVER 246
            F TV KVQPR A+ HA+L THVL L+N  L E      +   P S +R  K WY+LP +LHS DGR+ R++ + S++R
Sbjct:  250 FQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGAPLSTIRVIKRWYLLPGILHSFDGRIARKKRYNSLKR 327          
BLAST of mRNA_L-digitata_M_contig101558.1.1 vs. uniprot
Match: A0A6H5KJS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS3_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.620e-11
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   16 FITVVKVQPRLATAHAKLFTHVLGLLNHALGEHR-QERQSETPNSLLRATKWWYILPALLHSQDGRVTRRESFASVER 246
            F TV KVQPR A+ HA+L THVL L+N  L E       + TP   +R  K WY+LP +LH  DGR+ R++ + S++R
Sbjct:  354 FQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASLATGTPLPTIRVIKLWYLLPGILHFFDGRIARKKRYKSLKR 431          
BLAST of mRNA_L-digitata_M_contig101558.1.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.120e-8
Identity = 33/67 (49.25%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    1 DLEQRFITVVKVQPRLATAHAKLFTHVLGLLNHALGEHRQERQSE-TPNSLLRATKWWYILPALLHS 198
            DL  RF TV KVQPR A+ HA+L THVL L+N  L E      +  TP S +R  K WY+LP ++ S
Sbjct:  166 DLSLRFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKLWYLLPGVISS 232          
BLAST of mRNA_L-digitata_M_contig101558.1.1 vs. uniprot
Match: A0A6H5JZK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZK3_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 3.790e-8
Identity = 32/62 (51.61%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    1 DLEQRFITVVKVQPRLATAHAKLFTHVLGLLNHALGEHRQERQSE-TPNSLLRATKWWYILP 183
            DL  RF TV KVQPR A+ HA+L THVL L+N  L E      +  TP S +R  K+WY+LP
Sbjct:  166 DLSLRFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKFWYLLP 227          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101558.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JH58_9PHAE1.510e-1855.42Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE6.720e-1549.40Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JI32_9PHAE3.160e-1449.40Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKQ2_9PHAE4.300e-1448.19Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA96_9PHAE1.100e-1350.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQQ8_9PHAE2.240e-1248.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGW0_9PHAE3.340e-1247.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJS3_9PHAE1.620e-1146.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJC0_9PHAE2.120e-849.25Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JZK3_9PHAE3.790e-851.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101558contigL-digitata_M_contig101558:598..843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size246
Hectar predicted targeting categoryother localisation
Exons1
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406620.1600142-CDS-L-digitata_M_contig101558:597..8431682406620.1600142-CDS-L-digitata_M_contig101558:597..843Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101558 598..843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101558.1.1prot_L-digitata_M_contig101558.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101558 598..843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101558.1.1

>prot_L-digitata_M_contig101558.1.1 ID=prot_L-digitata_M_contig101558.1.1|Name=mRNA_L-digitata_M_contig101558.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=82bp
DLEQRFITVVKVQPRLATAHAKLFTHVLGLLNHALGEHRQERQSETPNSL
LRATKWWYILPALLHSQDGRVTRRESFASVER
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mRNA from alignment at L-digitata_M_contig101558:598..843-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101558.1.1 ID=mRNA_L-digitata_M_contig101558.1.1|Name=mRNA_L-digitata_M_contig101558.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=246bp|location=Sequence derived from alignment at L-digitata_M_contig101558:598..843- (Laminaria digitata LdigPH10_18mv male)
GATCTCGAACAACGCTTCATCACCGTGGTCAAAGTGCAGCCAAGACTGGC TACTGCCCATGCCAAACTGTTTACCCACGTGCTCGGCCTTCTCAATCACG CCTTGGGAGAGCATCGGCAGGAAAGACAATCGGAGACGCCGAACTCGCTC CTGAGAGCCACTAAATGGTGGTATATCCTGCCAGCTCTGCTGCACTCGCA AGACGGCCGGGTGACGCGACGCGAGAGTTTCGCGTCTGTCGAACGG
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Coding sequence (CDS) from alignment at L-digitata_M_contig101558:598..843-

>mRNA_L-digitata_M_contig101558.1.1 ID=mRNA_L-digitata_M_contig101558.1.1|Name=mRNA_L-digitata_M_contig101558.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=246bp|location=Sequence derived from alignment at L-digitata_M_contig101558:598..843- (Laminaria digitata LdigPH10_18mv male)
GATCTCGAACAACGCTTCATCACCGTGGTCAAAGTGCAGCCAAGACTGGC
TACTGCCCATGCCAAACTGTTTACCCACGTGCTCGGCCTTCTCAATCACG
CCTTGGGAGAGCATCGGCAGGAAAGACAATCGGAGACGCCGAACTCGCTC
CTGAGAGCCACTAAATGGTGGTATATCCTGCCAGCTCTGCTGCACTCGCA
AGACGGCCGGGTGACGCGACGCGAGAGTTTCGCGTCTGTCGAACGG
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