mRNA_L-digitata_M_contig101547.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101547.2.1
Unique NamemRNA_L-digitata_M_contig101547.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101547.2.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 1.860e-49
Identity = 158/299 (52.84%), Postives = 191/299 (63.88%), Query Frame = 1
Query:    4 LRAAVNCTGGGEVKADWVGRVSVSAPIVVAEGTFLSVTGEGDLAEVHAGGSHTRLFEVSPSAILTLTRLKLLGGSAVGGGAIFSESADLTLDNCTFEGNVATDGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLLVQGESKFKSNTAIGGGALFCGSENQHA-------ACSITDAEFVSNSAARA--IQDENYKEEELNVVGFTYLDGGGAAMFLFANVDITDSVFSGNHALLAGGALHGGLGTDITANGCRFVDNNAGKYGGTISASSMTLGGGTQLTNNLALDAGGAV 873
            L AAV+CT GG V+A W G V+++API V  GTFLS+TGE D AEV  GG  TR+F VS S  LTLT L+L GGSA  GGAI S  A +TLD C F GNVAT G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    L+CG     A       +CS+++A F++N+A+R   IQ  +Y       V    +DGGGAA F +A V+I+DSVF  N+A L+GGA+ GG  T++  NGC+F +N    YG  ++A S TLGG T LTNN A + G  V
Sbjct:   86 LGAAVDCTDGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEV-LGGGQTRMFYVSSSGGLTLTDLRLSGGSAASGGAIESSMASVTLDTCVFNGNVATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYCGGNETTAFANDATSSCSLSEAVFIANNASRETEIQYPSYW------VSTDEVDGGGAAAFWYAEVNISDSVFGSNYAQLSGGAVFGGNSTEMAINGCKFENNTTLGYGAAVAACSATLGGSTTLTNNSAEENGAGV 377          
BLAST of mRNA_L-digitata_M_contig101547.2.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 1.370e-45
Identity = 158/300 (52.67%), Postives = 188/300 (62.67%), Query Frame = 1
Query:    4 LRAAVNCTGGGEVKADWVGRVSVSAPIVVAEGTFLSVTGEGDLAEVHAGGSHTRLFEVSPSAILTLTRLKLLGGSAVGGGAIFSESADLTLDNCTFEGNVATDGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLLVQGESKFKSNTAIGGGALFCG--------SENQHAACSITDAEF-VSNSAARAIQD-ENYKEEELNVVGFTYLDGGGAAMFLFANVDITDSVFSGNHALLAGGALHGGLGTDITANGCRFVDNNAGKYGGTISASSMTLGGGTQLTNNLALDAGGAV 873
            L AAVNCTGGG V+  W G V+++API V  GTFLS+TGE D AEV  GG  TR+F VS    LTLT LKL GGSA  GGAI S  A + L++C F+GN AT G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    L+CG        S    A CS++DA F  +N+++  I D +   E  +N+ G     GGG A++  A VDITDS F GN+A L+GGAL+GG    I  +GC F +N    +G  ++ASS TLGG T LTNNLA   GG V
Sbjct:   47 LGAAVNCTGGGTVEVVWAGAVTLTAPIAVGAGTFLSITGEDDSAEVRGGGQ-TRMFYVSTLGGLTLTDLKLSGGSAASGGAIHSSMATVALNSCVFDGNFATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYCGGGVNSTLLSAGATAFCSLSDATFEFNNASSETILDYDAITEPWVNLYG-----GGGVAVYR-AVVDITDSEFQGNYAQLSGGALYGGTDAAIAIDGCWFENNFTPGHGAAVAASSATLGGSTVLTNNLATQNGGGV 339          
BLAST of mRNA_L-digitata_M_contig101547.2.1 vs. uniprot
Match: A0A6H5JB86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB86_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 2.540e-45
Identity = 150/305 (49.18%), Postives = 188/305 (61.64%), Query Frame = 1
Query:    4 LRAAVNCTGGGEVKADWVGRVSVSAPIVVAEGTFLSVTGEGDLAEVHAGGSHTRLFEVSPSAILTLTRLKLLGGSAVGGGAIFSESADLTLDNCTFEGNVATDGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLLVQGESKFKSNTAIGGGALFCG-SENQ-------------HAACSITDAEFVSNSAARAIQDENYKEEELNVVGFTYLDGGGAAMFLFANVDITDSVFSGNHALLAGGALHGGLGTDITANGCRFVDNNAGKYGGTISASSMTLGGGTQLTNNLALDAGGAVS 876
            L AAV+C  GG V+A W G V+++API V  GTFLS+TGEGD AEV  GG  T++F +S S  LTLT LKL GGSA  GGA+++ +A + L++C F+GN AT G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 G  L+CG +EN               A CS++ A F +N+A+     E   + +L    +  L GGGAA F    VDIT S F GN+A ++GGA++GG  + +T +G  F +N    YGG ++ASS  LGG T L NN A   G  VS
Sbjct:   60 LGAAVDCANGGTVEAIWAGTVTLTAPISVGTGTFLSITGEGDSAEV-LGGGQTQMFYISSSGGLTLTDLKLSGGSAASGGAVYASAASVALNSCVFDGNFATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGXGLYCGGAENSTTMTXXXXXXXXXXATCSLSGAVFGANNAS----SETIVDYDLIESPWVTLYGGGAAAFYRGVVDITGSEFLGNYAQVSGGAVYGGSDSVLTIDGSSFEENTTPGYGGGLAASSAVLGGDTLLRNNSATSNGAGVS 359          
BLAST of mRNA_L-digitata_M_contig101547.2.1 vs. uniprot
Match: D7FRH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH2_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.140e-42
Identity = 146/292 (50.00%), Postives = 177/292 (60.62%), Query Frame = 1
Query:    4 LRAAVNCTGGGEVKADWVGRVSVSAPIVVAEGTFLSVTGEGDLAEVHAGGSHTRLFEVSPSAILTLTRLKLLGGSAVGGGAIFSESADLTLDNCTFEGNVATDGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLLVQGESKFKSNTAIGGGALFC--GSENQHAACSITDAEFVSNSAARAIQDENYKEEELNVVGFTYLD--GGGAAMFLFANVDITDSVFSGNHALLAGGALHGGLGTDITANGCRFVDNNAGKYGGTISASSMTLGGGTQLTNNLALDAGG 867
            L AAVNCT GGEV+A W G V+++API V  GTFLS+TGE D AEV  GG  T++F VS S  LTLT LKL GG+A  GGAI S  A +TLD C F GNVAT G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    L+C  G E+   +CS++DA F SN A+         E  L+    T+ D  GGGAA F  A V+ITDS+F  N+A ++GG + GG G+ ++ +GC   +N    YG                T+N+A + GG
Sbjct:   57 LGAAVNCTDGGEVEAVWAGAVTLTAPISVGTGTFLSITGEDDSAEV-LGGGQTQMFYVSSSGGLTLTDLKLSGGNAASGGAIESSMASVTLDTCVFNGNVATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYCSGGVESSDPSCSLSDAAFTSNEASTGA------EVSLSDTVETWADLYGGGAAAFYLATVEITDSLFELNYAQVSGGGIFGGSGSSMSIDGCTINNNTTPGYGXXXXXXXXXXXXXXXXTSNVADETGG 341          
BLAST of mRNA_L-digitata_M_contig101547.2.1 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 7.370e-42
Identity = 149/303 (49.17%), Postives = 186/303 (61.39%), Query Frame = 1
Query:    4 LRAAVNCTGGGEVKADWVGRVSVSAPIVVAEGTFLSVTGEGDLAEVHAGGSHTRLFEVSPSAILTLTRLKLLGGSAVGGGAIFSESADLTLDNCTFEGNVATDGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLLVQGESKFKSNTAIGGGALFCG-SENQHA------------ACSITDAEFVSNSAARAIQDENYKEEELNVVGFTYLDGGGAAMFLFANVDITDSVFSGNHALLAGGALHGGLGTDITANGCRFVDNNAGKYGGTISASSMTLGGGTQLTNNLALDAGGAV 873
            L AAV+CT GG V+A W G V+++API V  GTFLS+TGE D AEV  GG  T++F VS S  LTLT L+L GGSA  GGA+++ +A + L+NC F+GN AT G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 G  L+CG +EN                CS++ A F +N+A+     E   + +L    +  L GGGAA F    VDIT S F GN+A ++GGA++GG  + +T +G  F +N    YGG ++ASS  LGG T L NN A   G  V
Sbjct:   60 LGAAVDCTDGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEV-LGGGQTQMFYVSSSGGLTLTDLRLSGGSAASGGAVYASAASVALNNCVFDGNFATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGXGLYCGGAENSXXXXXXXXXXXXXXTCSLSGAVFGANNAS----SETIVDYDLIEAPWVTLYGGGAAAFYRGVVDITGSEFLGNYAQVSGGAVYGGTDSVLTIDGSSFEENTTPGYGGGLAASSAVLGGDTLLRNNSATSNGAGV 357          
BLAST of mRNA_L-digitata_M_contig101547.2.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 9.650e-34
Identity = 131/258 (50.78%), Postives = 163/258 (63.18%), Query Frame = 1
Query:    4 LRAAVNCTGGGEVKADWVGRVSVSAPIVVAEGTFLSVTGEGDLAEVHAGGSHTRLFEVSPSAILTLTRLKLLGGSAVGGGAIFSESADLTLDNCTFEGNVATDGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLLVQGESKFKSNTAIGGGALFC--GSENQHAACSITDAEFVSNSAARAIQDENYKEEELNVVGFTYLDGGGAAMFLFANVDITDSVFSGNHALLAGGALHGGLGTDITANGCRFVDN 771
            L  AVNCT GG V+A W G V+++API V  GTFLS+TGE   AEV  GG  T++F VS S  LTLT L+L GGSA  GGAI S  A +TLD C F  NVAT G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    L+C  G E+   +CS++DA F SN A    +  ++ +    +  +  L GGGAA F  A V+IT+S+F  N+A ++GG + GG G+ ++ +GC   +N
Sbjct:   57 LSTAVNCTDGGTVEAVWAGAVTLTAPISVGTGTFLSITGEDGSAEV-LGGGQTQMFYVSSSGGLTLTDLRLSGGSAASGGAIESSMASVTLDTCIFSSNVATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYCSGGVESSAPSCSLSDATFTSNVATTGAE-VSFSD---TIETWADLYGGGAAAFYLAAVEITNSLFELNYAQVSGGGIFGGSGSSMSIDGCTINNN 309          
BLAST of mRNA_L-digitata_M_contig101547.2.1 vs. uniprot
Match: D8LNY1_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNY1_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 4.660e-9
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 1
Query:    4 LRAAVNCTGGGEVKADWVGRVSVSAPIVVAEGTFLSVTGEGDLAEVHAGGSHTRLFEVSPSAILTLTRLKLLGGSAVGGGAIFSESADLTLDNCTFEGNVAT 309
            L  AV+C+ G   +  WVG V+V   I V +GTFLS+ G  D +    G     LFEV+  A L L+ L L+ G++  GG+IF+  + +++  C F GN AT
Sbjct:   45 LAEAVDCSDG-TFEVSWVGNVAVEQTIRVPDGTFLSIVGLPDGSSTVDGAGEVGLFEVNRGA-LQLSGLSLVNGTSAVGGSIFASDSVVSVSECVFTGNAAT 144          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101547.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FRH0_ECTSI1.860e-4952.84Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FRH3_ECTSI1.370e-4552.67Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JB86_9PHAE2.540e-4549.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRH2_ECTSI1.140e-4250.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRG6_ECTSI7.370e-4249.17Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JS31_9PHAE9.650e-3450.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNY1_ECTSI4.660e-939.22Probable extracellular nuclease n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101547contigL-digitata_M_contig101547:10..903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G5Y7
PFAMsBeta_helix,Chlam_PMP
Model size894
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.77e-12
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Cds size894
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406620.137355-CDS-L-digitata_M_contig101547:9..9031682406620.137355-CDS-L-digitata_M_contig101547:9..903Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101547 10..903 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101547.2.1prot_L-digitata_M_contig101547.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101547 10..903 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101547.2.1

>prot_L-digitata_M_contig101547.2.1 ID=prot_L-digitata_M_contig101547.2.1|Name=mRNA_L-digitata_M_contig101547.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=298bp
FLRAAVNCTGGGEVKADWVGRVSVSAPIVVAEGTFLSVTGEGDLAEVHAG
GSHTRLFEVSPSAILTLTRLKLLGGSAVGGGAIFSESADLTLDNCTFEGN
VATDGNGGAVSAHGGNVTIVGGEFSGNSATRYGGAVHSVDGKLLVQGESK
FKSNTAIGGGALFCGSENQHAACSITDAEFVSNSAARAIQDENYKEEELN
VVGFTYLDGGGAAMFLFANVDITDSVFSGNHALLAGGALHGGLGTDITAN
GCRFVDNNAGKYGGTISASSMTLGGGTQLTNNLALDAGGAVSATKNA*
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mRNA from alignment at L-digitata_M_contig101547:10..903-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101547.2.1 ID=mRNA_L-digitata_M_contig101547.2.1|Name=mRNA_L-digitata_M_contig101547.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=894bp|location=Sequence derived from alignment at L-digitata_M_contig101547:10..903- (Laminaria digitata LdigPH10_18mv male)
TTTCTTCGAGCGGCTGTAAACTGCACTGGCGGGGGCGAAGTGAAGGCTGA CTGGGTTGGTCGCGTCTCAGTTAGCGCTCCGATTGTGGTAGCAGAGGGTA CGTTTCTATCGGTGACGGGAGAGGGTGATCTGGCCGAGGTGCATGCCGGC GGCTCCCATACCCGTCTGTTCGAAGTTTCTCCAAGTGCAATTCTGACCTT GACTCGGCTCAAGCTGCTGGGAGGCTCTGCGGTGGGCGGTGGCGCGATAT TTTCTGAGTCTGCAGACTTGACACTGGATAACTGCACCTTTGAAGGCAAT GTGGCCACCGATGGGAACGGGGGCGCGGTGTCGGCCCACGGTGGGAATGT CACGATCGTGGGCGGAGAGTTCTCGGGCAACAGCGCAACTCGATATGGCG GCGCCGTGCATTCCGTGGACGGCAAGTTGTTGGTTCAAGGGGAATCCAAG TTCAAGAGCAACACGGCGATCGGGGGCGGCGCACTGTTCTGTGGATCCGA GAACCAGCATGCTGCATGTTCCATCACAGACGCGGAGTTCGTGTCCAACA GTGCTGCCAGAGCGATTCAAGACGAAAATTATAAAGAAGAGGAGCTCAAT GTTGTTGGTTTTACATACCTTGATGGAGGCGGGGCCGCTATGTTCCTGTT TGCCAACGTCGACATCACTGATTCTGTATTCAGCGGAAACCACGCGTTGC TTGCGGGAGGGGCTTTGCACGGGGGCCTTGGCACGGATATCACGGCCAAT GGGTGCAGGTTTGTAGACAACAACGCGGGCAAGTACGGTGGCACGATTTC CGCTTCTTCCATGACGTTGGGAGGAGGCACGCAGCTCACAAACAATTTGG CCTTGGACGCTGGCGGCGCGGTGAGTGCTACCAAAAATGCCTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig101547:10..903-

>mRNA_L-digitata_M_contig101547.2.1 ID=mRNA_L-digitata_M_contig101547.2.1|Name=mRNA_L-digitata_M_contig101547.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=894bp|location=Sequence derived from alignment at L-digitata_M_contig101547:10..903- (Laminaria digitata LdigPH10_18mv male)
TTTCTTCGAGCGGCTGTAAACTGCACTGGCGGGGGCGAAGTGAAGGCTGA
CTGGGTTGGTCGCGTCTCAGTTAGCGCTCCGATTGTGGTAGCAGAGGGTA
CGTTTCTATCGGTGACGGGAGAGGGTGATCTGGCCGAGGTGCATGCCGGC
GGCTCCCATACCCGTCTGTTCGAAGTTTCTCCAAGTGCAATTCTGACCTT
GACTCGGCTCAAGCTGCTGGGAGGCTCTGCGGTGGGCGGTGGCGCGATAT
TTTCTGAGTCTGCAGACTTGACACTGGATAACTGCACCTTTGAAGGCAAT
GTGGCCACCGATGGGAACGGGGGCGCGGTGTCGGCCCACGGTGGGAATGT
CACGATCGTGGGCGGAGAGTTCTCGGGCAACAGCGCAACTCGATATGGCG
GCGCCGTGCATTCCGTGGACGGCAAGTTGTTGGTTCAAGGGGAATCCAAG
TTCAAGAGCAACACGGCGATCGGGGGCGGCGCACTGTTCTGTGGATCCGA
GAACCAGCATGCTGCATGTTCCATCACAGACGCGGAGTTCGTGTCCAACA
GTGCTGCCAGAGCGATTCAAGACGAAAATTATAAAGAAGAGGAGCTCAAT
GTTGTTGGTTTTACATACCTTGATGGAGGCGGGGCCGCTATGTTCCTGTT
TGCCAACGTCGACATCACTGATTCTGTATTCAGCGGAAACCACGCGTTGC
TTGCGGGAGGGGCTTTGCACGGGGGCCTTGGCACGGATATCACGGCCAAT
GGGTGCAGGTTTGTAGACAACAACGCGGGCAAGTACGGTGGCACGATTTC
CGCTTCTTCCATGACGTTGGGAGGAGGCACGCAGCTCACAAACAATTTGG
CCTTGGACGCTGGCGGCGCGGTGAGTGCTACCAAAAATGCCTGA
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