mRNA_L-digitata_M_contig101547.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig101547.2.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI) HSP 1 Score: 186 bits (472), Expect = 1.860e-49 Identity = 158/299 (52.84%), Postives = 191/299 (63.88%), Query Frame = 1
Query: 4 LRAAVNCTGGGEVKADWVGRVSVSAPIVVAEGTFLSVTGEGDLAEVHAGGSHTRLFEVSPSAILTLTRLKLLGGSAVGGGAIFSESADLTLDNCTFEGNVATDGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLLVQGESKFKSNTAIGGGALFCGSENQHA-------ACSITDAEFVSNSAARA--IQDENYKEEELNVVGFTYLDGGGAAMFLFANVDITDSVFSGNHALLAGGALHGGLGTDITANGCRFVDNNAGKYGGTISASSMTLGGGTQLTNNLALDAGGAV 873
L AAV+CT GG V+A W G V+++API V GTFLS+TGE D AEV GG TR+F VS S LTLT L+L GGSA GGAI S A +TLD C F GNVAT G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX L+CG A +CS+++A F++N+A+R IQ +Y V +DGGGAA F +A V+I+DSVF N+A L+GGA+ GG T++ NGC+F +N YG ++A S TLGG T LTNN A + G V
Sbjct: 86 LGAAVDCTDGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEV-LGGGQTRMFYVSSSGGLTLTDLRLSGGSAASGGAIESSMASVTLDTCVFNGNVATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYCGGNETTAFANDATSSCSLSEAVFIANNASRETEIQYPSYW------VSTDEVDGGGAAAFWYAEVNISDSVFGSNYAQLSGGAVFGGNSTEMAINGCKFENNTTLGYGAAVAACSATLGGSTTLTNNSAEENGAGV 377
BLAST of mRNA_L-digitata_M_contig101547.2.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI) HSP 1 Score: 175 bits (443), Expect = 1.370e-45 Identity = 158/300 (52.67%), Postives = 188/300 (62.67%), Query Frame = 1
Query: 4 LRAAVNCTGGGEVKADWVGRVSVSAPIVVAEGTFLSVTGEGDLAEVHAGGSHTRLFEVSPSAILTLTRLKLLGGSAVGGGAIFSESADLTLDNCTFEGNVATDGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLLVQGESKFKSNTAIGGGALFCG--------SENQHAACSITDAEF-VSNSAARAIQD-ENYKEEELNVVGFTYLDGGGAAMFLFANVDITDSVFSGNHALLAGGALHGGLGTDITANGCRFVDNNAGKYGGTISASSMTLGGGTQLTNNLALDAGGAV 873
L AAVNCTGGG V+ W G V+++API V GTFLS+TGE D AEV GG TR+F VS LTLT LKL GGSA GGAI S A + L++C F+GN AT G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX L+CG S A CS++DA F +N+++ I D + E +N+ G GGG A++ A VDITDS F GN+A L+GGAL+GG I +GC F +N +G ++ASS TLGG T LTNNLA GG V
Sbjct: 47 LGAAVNCTGGGTVEVVWAGAVTLTAPIAVGAGTFLSITGEDDSAEVRGGGQ-TRMFYVSTLGGLTLTDLKLSGGSAASGGAIHSSMATVALNSCVFDGNFATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYCGGGVNSTLLSAGATAFCSLSDATFEFNNASSETILDYDAITEPWVNLYG-----GGGVAVYR-AVVDITDSEFQGNYAQLSGGALYGGTDAAIAIDGCWFENNFTPGHGAAVAASSATLGGSTVLTNNLATQNGGGV 339
BLAST of mRNA_L-digitata_M_contig101547.2.1 vs. uniprot
Match: A0A6H5JB86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB86_9PHAE) HSP 1 Score: 166 bits (420), Expect = 2.540e-45 Identity = 150/305 (49.18%), Postives = 188/305 (61.64%), Query Frame = 1
Query: 4 LRAAVNCTGGGEVKADWVGRVSVSAPIVVAEGTFLSVTGEGDLAEVHAGGSHTRLFEVSPSAILTLTRLKLLGGSAVGGGAIFSESADLTLDNCTFEGNVATDGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLLVQGESKFKSNTAIGGGALFCG-SENQ-------------HAACSITDAEFVSNSAARAIQDENYKEEELNVVGFTYLDGGGAAMFLFANVDITDSVFSGNHALLAGGALHGGLGTDITANGCRFVDNNAGKYGGTISASSMTLGGGTQLTNNLALDAGGAVS 876
L AAV+C GG V+A W G V+++API V GTFLS+TGEGD AEV GG T++F +S S LTLT LKL GGSA GGA+++ +A + L++C F+GN AT G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G L+CG +EN A CS++ A F +N+A+ E + +L + L GGGAA F VDIT S F GN+A ++GGA++GG + +T +G F +N YGG ++ASS LGG T L NN A G VS
Sbjct: 60 LGAAVDCANGGTVEAIWAGTVTLTAPISVGTGTFLSITGEGDSAEV-LGGGQTQMFYISSSGGLTLTDLKLSGGSAASGGAVYASAASVALNSCVFDGNFATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGXGLYCGGAENSTTMTXXXXXXXXXXATCSLSGAVFGANNAS----SETIVDYDLIESPWVTLYGGGAAAFYRGVVDITGSEFLGNYAQVSGGAVYGGSDSVLTIDGSSFEENTTPGYGGGLAASSAVLGGDTLLRNNSATSNGAGVS 359
BLAST of mRNA_L-digitata_M_contig101547.2.1 vs. uniprot
Match: D7FRH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH2_ECTSI) HSP 1 Score: 159 bits (403), Expect = 1.140e-42 Identity = 146/292 (50.00%), Postives = 177/292 (60.62%), Query Frame = 1
Query: 4 LRAAVNCTGGGEVKADWVGRVSVSAPIVVAEGTFLSVTGEGDLAEVHAGGSHTRLFEVSPSAILTLTRLKLLGGSAVGGGAIFSESADLTLDNCTFEGNVATDGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLLVQGESKFKSNTAIGGGALFC--GSENQHAACSITDAEFVSNSAARAIQDENYKEEELNVVGFTYLD--GGGAAMFLFANVDITDSVFSGNHALLAGGALHGGLGTDITANGCRFVDNNAGKYGGTISASSMTLGGGTQLTNNLALDAGG 867
L AAVNCT GGEV+A W G V+++API V GTFLS+TGE D AEV GG T++F VS S LTLT LKL GG+A GGAI S A +TLD C F GNVAT G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX L+C G E+ +CS++DA F SN A+ E L+ T+ D GGGAA F A V+ITDS+F N+A ++GG + GG G+ ++ +GC +N YG T+N+A + GG
Sbjct: 57 LGAAVNCTDGGEVEAVWAGAVTLTAPISVGTGTFLSITGEDDSAEV-LGGGQTQMFYVSSSGGLTLTDLKLSGGNAASGGAIESSMASVTLDTCVFNGNVATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYCSGGVESSDPSCSLSDAAFTSNEASTGA------EVSLSDTVETWADLYGGGAAAFYLATVEITDSLFELNYAQVSGGGIFGGSGSSMSIDGCTINNNTTPGYGXXXXXXXXXXXXXXXXTSNVADETGG 341
BLAST of mRNA_L-digitata_M_contig101547.2.1 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI) HSP 1 Score: 164 bits (415), Expect = 7.370e-42 Identity = 149/303 (49.17%), Postives = 186/303 (61.39%), Query Frame = 1
Query: 4 LRAAVNCTGGGEVKADWVGRVSVSAPIVVAEGTFLSVTGEGDLAEVHAGGSHTRLFEVSPSAILTLTRLKLLGGSAVGGGAIFSESADLTLDNCTFEGNVATDGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLLVQGESKFKSNTAIGGGALFCG-SENQHA------------ACSITDAEFVSNSAARAIQDENYKEEELNVVGFTYLDGGGAAMFLFANVDITDSVFSGNHALLAGGALHGGLGTDITANGCRFVDNNAGKYGGTISASSMTLGGGTQLTNNLALDAGGAV 873
L AAV+CT GG V+A W G V+++API V GTFLS+TGE D AEV GG T++F VS S LTLT L+L GGSA GGA+++ +A + L+NC F+GN AT G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G L+CG +EN CS++ A F +N+A+ E + +L + L GGGAA F VDIT S F GN+A ++GGA++GG + +T +G F +N YGG ++ASS LGG T L NN A G V
Sbjct: 60 LGAAVDCTDGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEV-LGGGQTQMFYVSSSGGLTLTDLRLSGGSAASGGAVYASAASVALNNCVFDGNFATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGXGLYCGGAENSXXXXXXXXXXXXXXTCSLSGAVFGANNAS----SETIVDYDLIEAPWVTLYGGGAAAFYRGVVDITGSEFLGNYAQVSGGAVYGGTDSVLTIDGSSFEENTTPGYGGGLAASSAVLGGDTLLRNNSATSNGAGV 357
BLAST of mRNA_L-digitata_M_contig101547.2.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE) HSP 1 Score: 140 bits (354), Expect = 9.650e-34 Identity = 131/258 (50.78%), Postives = 163/258 (63.18%), Query Frame = 1
Query: 4 LRAAVNCTGGGEVKADWVGRVSVSAPIVVAEGTFLSVTGEGDLAEVHAGGSHTRLFEVSPSAILTLTRLKLLGGSAVGGGAIFSESADLTLDNCTFEGNVATDGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLLVQGESKFKSNTAIGGGALFC--GSENQHAACSITDAEFVSNSAARAIQDENYKEEELNVVGFTYLDGGGAAMFLFANVDITDSVFSGNHALLAGGALHGGLGTDITANGCRFVDN 771
L AVNCT GG V+A W G V+++API V GTFLS+TGE AEV GG T++F VS S LTLT L+L GGSA GGAI S A +TLD C F NVAT G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX L+C G E+ +CS++DA F SN A + ++ + + + L GGGAA F A V+IT+S+F N+A ++GG + GG G+ ++ +GC +N
Sbjct: 57 LSTAVNCTDGGTVEAVWAGAVTLTAPISVGTGTFLSITGEDGSAEV-LGGGQTQMFYVSSSGGLTLTDLRLSGGSAASGGAIESSMASVTLDTCIFSSNVATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYCSGGVESSAPSCSLSDATFTSNVATTGAE-VSFSD---TIETWADLYGGGAAAFYLAAVEITNSLFELNYAQVSGGGIFGGSGSSMSIDGCTINNN 309
BLAST of mRNA_L-digitata_M_contig101547.2.1 vs. uniprot
Match: D8LNY1_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNY1_ECTSI) HSP 1 Score: 68.2 bits (165), Expect = 4.660e-9 Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 1
Query: 4 LRAAVNCTGGGEVKADWVGRVSVSAPIVVAEGTFLSVTGEGDLAEVHAGGSHTRLFEVSPSAILTLTRLKLLGGSAVGGGAIFSESADLTLDNCTFEGNVAT 309
L AV+C+ G + WVG V+V I V +GTFLS+ G D + G LFEV+ A L L+ L L+ G++ GG+IF+ + +++ C F GN AT
Sbjct: 45 LAEAVDCSDG-TFEVSWVGNVAVEQTIRVPDGTFLSIVGLPDGSSTVDGAGEVGLFEVNRGA-LQLSGLSLVNGTSAVGGSIFASDSVVSVSECVFTGNAAT 144 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101547.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig101547.2.1 >prot_L-digitata_M_contig101547.2.1 ID=prot_L-digitata_M_contig101547.2.1|Name=mRNA_L-digitata_M_contig101547.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=298bp FLRAAVNCTGGGEVKADWVGRVSVSAPIVVAEGTFLSVTGEGDLAEVHAGback to top mRNA from alignment at L-digitata_M_contig101547:10..903- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig101547.2.1 ID=mRNA_L-digitata_M_contig101547.2.1|Name=mRNA_L-digitata_M_contig101547.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=894bp|location=Sequence derived from alignment at L-digitata_M_contig101547:10..903- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig101547:10..903- >mRNA_L-digitata_M_contig101547.2.1 ID=mRNA_L-digitata_M_contig101547.2.1|Name=mRNA_L-digitata_M_contig101547.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=894bp|location=Sequence derived from alignment at L-digitata_M_contig101547:10..903- (Laminaria digitata LdigPH10_18mv male)back to top |