mRNA_L-digitata_M_contig101536.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101536.1.1
Unique NamemRNA_L-digitata_M_contig101536.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101536.1.1 vs. uniprot
Match: D7G1H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1H8_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 2.670e-27
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 QAFMDLVVAFTCGFLTLQSHGGRLVKLLGMMTQKSPFPCFQGKDPPESIVAKL 159
            QAFMD VVAFTCGFLTLQ+HGGRLVKLLGMMTQKSPFPCFQGKDPPESIVAKL
Sbjct: 1525 QAFMDFVVAFTCGFLTLQAHGGRLVKLLGMMTQKSPFPCFQGKDPPESIVAKL 1577
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BLAST of mRNA_L-digitata_M_contig101536.1.1 vs. uniprot
Match: A0A6H5KWD1_9PHAE (PI3K/PI4K catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWD1_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 6.790e-27
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 QAFMDLVVAFTCGFLTLQSHGGRLVKLLGMMTQKSPFPCFQGKDPPESIVAKL 159
            QAFMD VVAFTCGFLTLQ+HGGRLVKLLGMMTQKSPFPCFQGKDPP+SIVAKL
Sbjct: 1743 QAFMDFVVAFTCGFLTLQAHGGRLVKLLGMMTQKSPFPCFQGKDPPDSIVAKL 1795
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BLAST of mRNA_L-digitata_M_contig101536.1.1 vs. uniprot
Match: A0A835YV70_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV70_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.100e-12
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 QAFMDLVVAFTCGFLTLQSHGGRLVKLLGMMTQKSPFPCFQGKDPPESIVAKLR 162
            + FM+ VVAFTCGFL LQS   R+V L+ +M + SPFPCFQGKD  ++I+ KL+
Sbjct:  244 KGFMEFVVAFTCGFLALQSQRARIVSLVEIMMEDSPFPCFQGKDT-QAILRKLQ 296
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101536.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1H8_ECTSI2.670e-2796.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWD1_9PHAE6.790e-2794.34PI3K/PI4K catalytic domain-containing protein n=1 ... [more]
A0A835YV70_9STRA3.100e-1257.41Kinase-like domain-containing protein n=1 Tax=Trib... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101536contigL-digitata_M_contig101536:591..755 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G1H8
Preferred namePI4KB
PFAMsAnk_5,FYVE,PI3_PI4_kinase,Pik1
Model size165
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078
KEGG koko:K19801
KEGG ReactionR03361
KEGG Pathwayko00562,ko01100,ko04070,map00562,map01100,map04070
KEGG ModuleM00130
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000139,GO:0000212,GO:0000226,GO:0000280,GO:0000910,GO:0000916,GO:0003674,GO:0003824,GO:0004430,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006464,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006898,GO:0006996,GO:0007010,GO:0007017,GO:0007030,GO:0007049,GO:0007051,GO:0007110,GO:0007111,GO:0007112,GO:0007140,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007283,GO:0007423,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0008610,GO:0008654,GO:0009058,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010256,GO:0010259,GO:0010604,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016301,GO:0016310,GO:0016567,GO:0016740,GO:0016772,GO:0016773,GO:0019222,GO:0019538,GO:0019637,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0023052,GO:0030029,GO:0030036,GO:0030258,GO:0030725,GO:0030726,GO:0030865,GO:0030866,GO:0031032,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0033206,GO:0035295,GO:0035556,GO:0036211,GO:0036213,GO:0042176,GO:0042710,GO:0043062,GO:0043063,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043583,GO:0044010,GO:0044011,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044764,GO:0044837,GO:0045017,GO:0045732,GO:0046474,GO:0046486,GO:0046488,GO:0046834,GO:0046854,GO:0048015,GO:0048017,GO:0048137,GO:0048232,GO:0048285,GO:0048471,GO:0048513,GO:0048518,GO:0048609,GO:0048731,GO:0048839,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051301,GO:0051321,GO:0051703,GO:0051704,GO:0051716,GO:0052742,GO:0060255,GO:0060872,GO:0061640,GO:0061982,GO:0061983,GO:0065007,GO:0070647,GO:0071704,GO:0071840,GO:0071889,GO:0071944,GO:0080090,GO:0090175,GO:0090407,GO:0090605,GO:0090609,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0140013,GO:1901564,GO:1901576,GO:1903046,GO:1905330,GO:2000026,GO:2000027
Exons1
Evalue7.61e-26
EggNOG OGsCOG5032@1|root,KOG1818@1|root,KOG0903@2759|Eukaryota,KOG1818@2759|Eukaryota
EC2.7.1.67
Descriptionintracellular protein transport
Cds size156
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406619.992366-CDS-L-digitata_M_contig101536:590..7461682406619.992366-CDS-L-digitata_M_contig101536:590..746Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101536 591..746 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406620.003455-UTR-L-digitata_M_contig101536:746..7551682406620.003455-UTR-L-digitata_M_contig101536:746..755Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig101536 747..755 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101536.1.1prot_L-digitata_M_contig101536.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101536 591..746 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101536.1.1

>prot_L-digitata_M_contig101536.1.1 ID=prot_L-digitata_M_contig101536.1.1|Name=mRNA_L-digitata_M_contig101536.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=52bp
MDLVVAFTCGFLTLQSHGGRLVKLLGMMTQKSPFPCFQGKDPPESIVAKL
R*
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mRNA from alignment at L-digitata_M_contig101536:591..755-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101536.1.1 ID=mRNA_L-digitata_M_contig101536.1.1|Name=mRNA_L-digitata_M_contig101536.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=165bp|location=Sequence derived from alignment at L-digitata_M_contig101536:591..755- (Laminaria digitata LdigPH10_18mv male)
CAGGCGTTCATGGACCTTGTGGTGGCGTTTACGTGCGGGTTTCTGACTCT
GCAGTCCCACGGGGGACGTTTGGTGAAGCTGCTGGGGATGATGACGCAGA
AGTCGCCGTTTCCTTGCTTTCAAGGGAAAGACCCCCCGGAGAGTATTGTC
GCGAAGCTCAGGTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig101536:591..755-

>mRNA_L-digitata_M_contig101536.1.1 ID=mRNA_L-digitata_M_contig101536.1.1|Name=mRNA_L-digitata_M_contig101536.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=156bp|location=Sequence derived from alignment at L-digitata_M_contig101536:591..755- (Laminaria digitata LdigPH10_18mv male)
ATGGACCTTGTGGTGGCGTTTACGTGCGGGTTTCTGACTCTGCAGTCCCA
CGGGGGACGTTTGGTGAAGCTGCTGGGGATGATGACGCAGAAGTCGCCGT
TTCCTTGCTTTCAAGGGAAAGACCCCCCGGAGAGTATTGTCGCGAAGCTC
AGGTGA
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