mRNA_L-digitata_M_contig101515.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101515.1.1
Unique NamemRNA_L-digitata_M_contig101515.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101515.1.1 vs. uniprot
Match: A0A7V1EA37_9SPIR (Condensation domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A7V1EA37_9SPIR)

HSP 1 Score: 158 bits (399), Expect = 2.210e-41
Identity = 101/293 (34.47%), Postives = 165/293 (56.31%), Query Frame = 1
Query:   10 PLARFDWLVHAPDHSTIMLTFHHIIGDGISGAYVMRDLLESIAANMGGSDSFERPILPVRREIEAHVPA---ALVSRGMWRQFFARIGAMLSWMWRHGKPKGPLADDPRSSAGGRKVCVIPRVLEPARTQRIVDASRANQTTVHGALSAAIMLAASEEHGKPTPMLF--ASPVNVRETMEPPIEDDVGLFVSIGATLHQVDPGAQDFWELAREARQELRAFIDDGGAFTLLPMQSK----ALVWWARLLPASWFAKLVRRVQLPGVGLTNIGRADIASAYGALSIERLGFAVS 861
            PLAR   + H    +T++LT HH IGDG +GA++MRDL  + A+ +   +S   P LP R ++ A+ P     +  R  + +F  R+   LS M R G P  PL D  ++    R+ C++ + L  A   ++   +R  +TT+HGAL A+ +LA   E G    + F   SPVN+R  ++PP+EDD+GLF+++G ++++    + DFW+LARE RQ L   ++ G  F  + M +     A ++ +  + A  +  +  ++ L G+  +NIGR DIA+ + +  +E LGFA S
Sbjct:  125 PLARCVLIRHGDTKTTVLLTVHHSIGDGKAGAFLMRDLFRA-ASKVQKGESAGLPGLPPRMDMTAYFPGWAKGISGRLRYIRFGLRV---LSAMVRWGAPAMPLVDR-KAPVRMRRACIVAKTLNAATVAKLHKRARIEKTTLHGALIASQILAVVHERGSAKELAFIIGSPVNLRARLDPPVEDDLGLFITVGISINRAG-FSTDFWQLAREVRQSLLECVERGDPFVYVMMHNDLSAVAGLFGSGGVGARVYTAIAGKLHLGGLAFSNIGRVDIAADHDSFVVESLGFAAS 411          
BLAST of mRNA_L-digitata_M_contig101515.1.1 vs. uniprot
Match: A0A6L4YKV0_9RHOO (Condensation domain-containing protein n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A6L4YKV0_9RHOO)

HSP 1 Score: 147 bits (370), Expect = 2.390e-37
Identity = 100/291 (34.36%), Postives = 151/291 (51.89%), Query Frame = 1
Query:   10 PLARFDWLVHAPDHSTIMLTFHHIIGDGISGAYVMRDLLESIAANMGGSDSFERPILPVRREIEAHVPAALVSRGMWRQFFARIGAMLSWMWRHGKPKGPLADDPRSSAGGRKVCVIPRVLEPARTQRIVDASRANQTTVHGALSAAIMLAASEEHGKPTPML-FASPVNVRETMEPPIEDDVGLFVSIGATLHQVDPGAQDFWELAREARQELRAFIDDGGAFTLLPMQSKALVWWARLLPAS-----WFAKLVRRVQLPGVGLTNIGRADIASAYGALSIERLGFAVSL 864
            P+ R  W+ H   H+T+  TFHH+IGDGISG+ + RDL++++          +  ILP+   ++ H+PA       +       G  LS + RHG P   L  +  +S G R+  V     EP     + D +R  QTT+HGAL+AAI++A+S E G P   + F+S +N+R+   PPI DD+GL+ ++  + H V  G   FW LARE +Q L   I  G  F  +   ++ +++  R            AK+  R  +    LTNIG+  IA+  G + +  LGF VSL
Sbjct:  109 PMVRCVWIRHDLAHATLFATFHHLIGDGISGSLLYRDLMQALRGE-------DLDILPLAESMDGHMPATARGLKGFAGLVKLAGRRLSRILRHG-PLRFLPVERPASFGERRAAVRMLRFEPEFVCALSDRARREQTTLHGALAAAIVIASSPEIGAPPAHIAFSSALNMRDRFSPPIGDDLGLYATLAYSTHVVGDGTA-FWPLARELKQGLNEAIASGQPFLGVTGIARWIMYRYRKAGGGETGRQTAAKVFSRGMIKAFALTNIGKVAIATDNGPIRVASLGFVVSL 390          
BLAST of mRNA_L-digitata_M_contig101515.1.1 vs. uniprot
Match: A0A5C6A3H2_9BACT (Chondramide synthase cmdD n=1 Tax=Stieleria varia TaxID=2528005 RepID=A0A5C6A3H2_9BACT)

HSP 1 Score: 134 bits (338), Expect = 1.100e-32
Identity = 96/288 (33.33%), Postives = 147/288 (51.04%), Query Frame = 1
Query:   10 PLARFDWLVHAPDHSTIMLTFHHIIGDGISGAYVMRDLLESIAANMGGSDSFERPILPVRREIEAHVPAALVS-RGMWRQFFARIGAMLSWMWRHGKPKGPLADDPRSSAGGRKVCVIPRVLEPARTQRIVDASRANQTTVHGALSAAIMLAASEEHGKPTPMLFASPVNVRETMEPPIEDDVGLFVSIGATLHQVDPGAQDFWELAREARQELRAFIDDGGAFTLLPMQSKAL-VWWARLLPASWFAKLVRRVQLPGVGLTNIGRADIASAYGALSIERLGFAVSLG 867
            PL R     H  D S +++TF H++GDG+SG Y++RDLL+ I           +  L     ++  +PAA++   G  R+     G +   + R+G    P+  D +++   R   VI +  + +    +   SR  QTTVHGALSAAI+L    + GK   +    PVNVR+++ P + +DVG+F S+     +VDPG + FW+LAR  R +L++ ID G    +  M  +         LP    A+  +R      GLTN+GR D++   G L +  L FAVS G
Sbjct:  118 PLFRCVLADHGNDESHLLITFDHVVGDGMSGMYLLRDLLQHIQTPQSDGFGPVKQRLADTTAMDERLPAAVLGGAGSLRRAKLVAGVVFENL-RYGAVS-PIPMDQQAALNQRHTKVISQEFDESFVASLAKRSRQEQTTVHGALSAAIVLGVVHDAGKSLSIKHRCPVNVRDSLVPAVGEDVGMFASMVLFRGRVDPG-EPFWDLARRIRGQLKSSIDRGQPAVMASMLPRLYQTIGGDKLPLETLAERWQRHTRSTSGLTNVGRLDLSIGDGPLQLRALTFAVSPG 402          
BLAST of mRNA_L-digitata_M_contig101515.1.1 vs. uniprot
Match: UPI000498488B (condensation domain-containing protein n=2 Tax=Nostocales TaxID=1161 RepID=UPI000498488B)

HSP 1 Score: 110 bits (276), Expect = 4.160e-24
Identity = 85/286 (29.72%), Postives = 146/286 (51.05%), Query Frame = 1
Query:    1 SHAPLARFDWLVHAPDHSTIMLTFHHIIGDGISGAYVMRDLLESIAANMGGSDSFER--PILPVRREIEAHVPAALVSRGMWRQFFARIGAMLSWMWRHGKPKGPLADDPRSSAGGRKVCVIPRVLEPARTQRIVDASRANQTTVHGALSAAIMLAASEEHGKPTPMLFA--SPVNVRETMEPPIEDDVGLFVSIGATLHQVDPGAQDFWELAREARQELRAFIDDGGAFTLLPMQSKALVWWARLLPASWFAKLVRRVQLPGVGLTNIGRADIASAYGALSIERL 846
            S  PL R   L+H+PD S +++TFHH IGDG+SGAYV+RD+L+ I    G  DS     P LP   EI   V    V   +     A   ++L+  +R+ + +      P        + +    L  A+T ++V   R   T+VHGAL AA +LA + E      ++    SP+N+R  ++ P+ +++G +++   T H++     DFW+LARE + +L   + DG  F  + ++++AL+  + +          R++    + +TN+G  +I   +G L ++ L
Sbjct:  102 SEEPLLRV-LLLHSPDISNLIITFHHCIGDGLSGAYVIRDILQFI----GEPDSPRELLPDLPPVDEIIPDVTKNWVEEDLENSIEAE--SILTATYRNNQDRNTSEIFP--------IRLFNWTLSSAKTTKLVARCRVENTSVHGALCAAFLLAIAAEVKSSNDIILKCHSPINIRNYLKIPVNENLGEYITRPVTDHRLSQNT-DFWDLAREVKYKLNQVVADGKLFDDV-LKARALL--SSISNKGGETSDARKIGRIDIAITNLGNLNIKQQFGNLQLQEL 368          
BLAST of mRNA_L-digitata_M_contig101515.1.1 vs. uniprot
Match: A0A4Q9J2X5_9CYAN (Condensation domain-containing protein n=1 Tax=Westiellopsis prolifica IICB1 TaxID=1970206 RepID=A0A4Q9J2X5_9CYAN)

HSP 1 Score: 110 bits (274), Expect = 1.010e-23
Identity = 89/294 (30.27%), Postives = 141/294 (47.96%), Query Frame = 1
Query:   10 PLARFDWLVHAPDHSTIMLTFHHIIGDGISGAYVMRDLLESIAANMGGSDSFERPI-LPVRREIEAHVPAALVSRGMWRQFFARIGAMLSWMWRHGKPKGPLADDPRSSAGGRKV-------CVIPRVLEPARTQRIVDASRANQTTVHGALSAAIMLAASEEHGKP--TPMLFASPVNVRETMEPPIEDDVGLFVSIGATLHQVDPGAQDFWELAREARQELRAFIDDGGAFTLLPMQSKALVWWARLLPASWFAKLVRRVQLPGVGLTNIGRADIASAYGALSIERLGFAVS 861
            PL R  WL     H  +++T HH+I DG SG Y++RDLL SI A +      +  I LP R  I+  +PA+          F+    +L  +    +    LA  P++ A  + V       CVI R+L    T+ +    R  +T+VH  L A +M A++++  K     +   S +N+R  + PPI+D++G + S+ +T HQ+       W LARE +  L   ++ G     L +Q   L +  R       A+ V +V     G++N+G  +I   YG+L I +L F VS
Sbjct:  103 PLVRVVWLRSEKVH-ILLITLHHVISDGKSGVYLVRDLL-SITAELLSRGVIKSHIPLPERPSIDEIIPAS----------FSGFKGVLGMLKTGLRQNLMLAKQPQTFAIEKDVPLQQIRRCVIHRILSEETTRLLTVRCRQEKTSVHAILCAIMMKASAQKINKQKIVRLCCLSAINLRHLLTPPIKDEIGFYASVLSTFHQLGVETSP-WNLAREVKTNLSNLLEQGQVLATLMLQKNILSF--RCPSPIKMAQEVNQVFRATTGVSNLGLIEIPENYGSLVIRKLHFCVS 381          
BLAST of mRNA_L-digitata_M_contig101515.1.1 vs. uniprot
Match: A0A8J7XX71_9EURY (Condensation domain-containing protein n=1 Tax=Theionarchaea archaeon TaxID=2747605 RepID=A0A8J7XX71_9EURY)

HSP 1 Score: 108 bits (270), Expect = 3.720e-23
Identity = 85/293 (29.01%), Postives = 144/293 (49.15%), Query Frame = 1
Query:    1 SHAPLARFDWLVHAPDHSTIMLTFHHIIGDGISGAYVMRDLLESIAANMGGS-DSFERPILPVRREIEAHVPAALVSRGMWRQFFARIGAMLSWMWRHGKPKGPLADDPRSSAGGRKVCVIPRVLEPARTQRIVDASRANQTTVHGALSAAIMLAASE-----EHGKPTPMLFASPVNVRETMEPPIEDDVGLFVSIGATLHQVDPGAQDFWELAREARQELRAFIDDGGAFTLLPMQSKALVWWARLLPASWFAKLVRRVQLPGVGLTNIGRADIASAYGALSIERLGFAVS 861
            S  PL R   L+   +HS I+  FHH++GDG SG Y+M DL++ + +   G   +F+R  +P R  +E  +P      GM +        M + + R  +P+  L  D ++S       ++   L    T  +++  R   T+VHGA+ AA+++AAS+     E   P  +   SPV++R  + PP+ +++G + S+  T H+V    +  W+LAR  R+ ++  I  G     + +        AR    S FA+   ++    + +TN+ R  I   Y  LS+E+L F VS
Sbjct:  109 STGPLLRVV-LLQNRNHSDIVTRFHHVMGDGTSGMYLMHDLIKLLGSICNGKVPTFKR--MPERPPVEELLPHMNNLEGMVKSATLASRQMFNIIMR--RPR-TLPIDRKASLEECFTRIVHCTLSKEETGALIERCRRESTSVHGAICAAMLMAASKQICNSEEKYPITLNCMSPVDLRPYLNPPLGEELGFYASMVITAHKVQDNGK-LWDLARSVRRRVQTSIQSGDPLVFISLLDMLTPHDAR---PSDFARRASQIYPAPIMVTNLRRIAIPKVYETLSLEKLHFVVS 391          
BLAST of mRNA_L-digitata_M_contig101515.1.1 vs. uniprot
Match: A0A8J6ZTZ0_DESMC (Condensation domain-containing protein n=1 Tax=Desmonostoc muscorum LEGE 12446 TaxID=1828758 RepID=A0A8J6ZTZ0_DESMC)

HSP 1 Score: 108 bits (269), Expect = 4.030e-23
Identity = 89/282 (31.56%), Postives = 139/282 (49.29%), Query Frame = 1
Query:    7 APLARFDWLVHAPDHSTIMLTFHHIIGDGISGAYVMRDLLESIAANMGGSDSFERPILPVRREIEAHVPAALVSRGMWRQFFARIGAMLSWMWRHGKPKGPLADDPRSSAGGRKVCVIPRVLEPARTQRIVDASRANQTTVHGALSAAIMLAASEEHGKPTPMLFA-SPVNVRETMEPPIEDDVGLFVSIGATLHQVDPGAQDFWELAREARQELRAFIDDGGAFTLLPMQSKALVWWARLLPASWFAKLVRRVQLP-GVGLTNIGRADIASAYGALSIERL 846
            APL R   L+ +   S +M+  HH+I DG+SG Y+MRD+L+ +     G + FER          +H+ AAL    +    F       +       PK      P S      +  +  VL P  TQ+++  SRA  TTVHGA+SAA +LA +++  KP+ ++    PVNVR  +  P+ D VGL+  +  T H + P +  FW++AR  + +L              ++ +A+   A L  A+ FA+     Q P  + +TN+GR ++A  YG + IE L
Sbjct:  103 APLLRVV-LLQSEAESELMIICHHVIADGLSGVYLMRDILQRL-----GGEIFER----------SHLSAAL---SLESSLFGITPCPET------TPKPTDYIPPLSRRAPPHIHTV--VLSPELTQQLIQRSRAEHTTVHGAVSAAFLLALTQQDAKPSDVMQCLHPVNVRSHLSLPMPDGVGLYFCLCMTTHSLQPDSA-FWDVARSVKSQLSQIDIAQQLVEEHQLRQRAI---ANLTDATTFAEAGGSSQSPCQLNVTNLGRINMAQQYGNIWIEAL 353          
BLAST of mRNA_L-digitata_M_contig101515.1.1 vs. uniprot
Match: UPI0016854544 (condensation domain-containing protein n=1 Tax=Nostoc flagelliforme TaxID=1306274 RepID=UPI0016854544)

HSP 1 Score: 102 bits (253), Expect = 6.580e-21
Identity = 86/281 (30.60%), Postives = 135/281 (48.04%), Query Frame = 1
Query:    7 APLARFDWLVHAPDHSTIMLTFHHIIGDGISGAYVMRDLLESIAANMGGSDSFERPILPVRREIEAHVPAALVSRGMWRQFFARIGAMLSWMWRHGKPKGPLADDPRSSAGGRKVCVIPRVLEPARTQRIVDASRANQTTVHGALSAAIMLAASEEHGKPTPMLFA-SPVNVRETMEPPIEDDVGLFVSIGATLHQVDPGAQDFWELAREARQELRAFIDDGGAFTLLPMQSKALVWWARLLPASWFAKLVRRVQLPGVGLTNIGRADIASAYGALSIERL 846
            APL R   L+ +   S +M+  HH I DG+SG Y+MR++L+ +     G   FER        +E+ +P    S     +   +    +  + R  +P                  +   VL P  TQ+++  SRA  TTVHGA+SAA +LA +++  KP+ ++    PVNVR  +  P+ D VGL++    T H     +  FW++AR  + +L   ID   A  L+  +       A L  A+ FA+ V+      + +TN+GR D+A  YG + IE L
Sbjct:  103 APLLRVV-LLQSGAESELMIICHHAISDGLSGIYLMRNVLQGL-----GGKIFERSEFSATLSLESAIPGIAPSP----EATVKPTDYVPTLSRRPRPH-----------------IRTVVLSPELTQQLIQRSRAEHTTVHGAISAAFLLALTQQDVKPSDVMRCLHPVNVRSQLSLPMPDGVGLYIYFCMTTHSRMADSA-FWDVARSVKSQLSQ-IDI--AQQLVEERQLRQPAMANLTDATAFAEEVQSQYHCQLSVTNLGRIDMAQQYGNIRIEAL 352          
BLAST of mRNA_L-digitata_M_contig101515.1.1 vs. uniprot
Match: A0A7W1A917_9CHLR (Condensation domain-containing protein n=1 Tax=Herpetosiphonaceae bacterium TaxID=2720503 RepID=A0A7W1A917_9CHLR)

HSP 1 Score: 102 bits (253), Expect = 6.980e-21
Identity = 93/303 (30.69%), Postives = 148/303 (48.84%), Query Frame = 1
Query:   10 PLARFDWLVHAPDHSTIMLTFHHIIGDGISGAYVMRDLLESIAANMGGSDSFERPILPVRREIEAHVPAALVSRGMWR-----QFFARIGAMLSWMWRHGKPKGPLADDPRSSAGGRKVCVIPRVLEPARTQRIVDASRANQTTVHGALSAAIMLAASEEHGKP--TPMLFASPVNVRETMEPPIEDDVGLFVSIGATLHQVDPGAQDFWELAREARQELRAFIDDGGAFTLLPMQS--KALVWWARLLP--ASWFAKLVRRVQLPGVGLTNIGRADIASAYGALSIERLGFAVSLGCSREKG 885
            PLAR   L H  D +TI+L+F H +GDG+S   +MRDLLE+IA +  G+ S   P L +R  +E  +PAA   RG+       +  AR   M +    H    G  A D   +A G         LEP+ T+ +V  +R++ TTVHG L AA+ LA  ++  +    P+    PV++   +EP I +++ LF +   T++     A+  WE+A +   +L   I     F  L +     +L+   R  P       +LV + ++P    +N+G   I  +YG +++   GFA  L  + + G
Sbjct:  102 PLARCVVLRHTEDTATIILSFQHTLGDGMSSVTLMRDLLEAIAQSQDGAPS-PAP-LTLRPAVETFLPAA--GRGLRGIVNIVRMLARQSKMDTTAVTH---DGQAAHDKVHTAIGSYY------LEPSLTRALVAKARSHGTTVHGVLCAAVFLAVEKDFARTEAVPLSCVVPVDLHARVEPTIGEELLLF-NAPVTVYYRGGSARSVWEVASDITGKLNDSITRNEHFAGLSLMRLVSSLLARRRAKPNGEQGMQELVAKTEVPTFLFSNLGALKINHSYGPITLHSFGFAGGLAFTMDLG 390          
BLAST of mRNA_L-digitata_M_contig101515.1.1 vs. uniprot
Match: UPI001685D466 (condensation domain-containing protein n=2 Tax=unclassified Leptolyngbya TaxID=2650499 RepID=UPI001685D466)

HSP 1 Score: 101 bits (252), Expect = 8.560e-21
Identity = 83/281 (29.54%), Postives = 134/281 (47.69%), Query Frame = 1
Query:    7 APLARFDWLVHAPDHSTIMLTFHHIIGDGISGAYVMRDLLESIAANMGGSDSFERPILPVRREIEAHVPAALVSRGMWRQFFARIGAMLSWMWRHGKPKGPLADDPRSSAGGRKVCVIPRVLEPARTQRIVDASRANQTTVHGALSAAIMLAASEEHGKPTPMLFA-SPVNVRETMEPPIEDDVGLFVSIGATLHQVDPGAQDFWELAREARQELRAFIDDGGAFTLLPMQSKALVWWARLLPASWFAKLVRRVQLPGVGLTNIGRADIASAYGALSIERL 846
            APL R   L+ +   S +M+  HH I DG+SG Y+MRD+L+ +     G   FER  L     +E+ +P    S                      KP     D P + +   +  +   +L P  TQ+++  SR+  TTVHGA+SAA +LA +++  KP+ +L    PVNVR  +  P+ + VGL++    T H +   +  FW++AR  + +L   ID   A  ++  +       A L  A+   +  +      + +TN+GR D+A  YG + I+ L
Sbjct:  103 APLLRVI-LLQSEAESELMIICHHAIADGLSGVYLMRDILQGL-----GGKIFERSELSAALSLESALPGIAPSPEATA-----------------KP----TDYPPALSRRSRPHIHTVLLSPEFTQQLIQRSRSEHTTVHGAISAAFLLALTQQDVKPSDVLRCLHPVNVRSQLSLPMPEGVGLYICNCTTTHSLQADSA-FWDVARSVKSQLSQ-IDI--AQQIVEERQLRQPTMANLTDATALVEAAKSQYFCQLNVTNLGRIDMAQQYGNIRIKAL 352          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101515.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V1EA37_9SPIR2.210e-4134.47Condensation domain-containing protein n=2 Tax=roo... [more]
A0A6L4YKV0_9RHOO2.390e-3734.36Condensation domain-containing protein n=1 Tax=Rho... [more]
A0A5C6A3H2_9BACT1.100e-3233.33Chondramide synthase cmdD n=1 Tax=Stieleria varia ... [more]
UPI000498488B4.160e-2429.72condensation domain-containing protein n=2 Tax=Nos... [more]
A0A4Q9J2X5_9CYAN1.010e-2330.27Condensation domain-containing protein n=1 Tax=Wes... [more]
A0A8J7XX71_9EURY3.720e-2329.01Condensation domain-containing protein n=1 Tax=The... [more]
A0A8J6ZTZ0_DESMC4.030e-2331.56Condensation domain-containing protein n=1 Tax=Des... [more]
UPI00168545446.580e-2130.60condensation domain-containing protein n=1 Tax=Nos... [more]
A0A7W1A917_9CHLR6.980e-2130.69Condensation domain-containing protein n=1 Tax=Her... [more]
UPI001685D4668.560e-2129.54condensation domain-containing protein n=2 Tax=unc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101515contigL-digitata_M_contig101515:8..898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1469607.KK073768_gene1031
PFAMsAATase,Condensation
Model size891
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.83e-25
EggNOG OGsCOG1020@1|root,COG1020@2|Bacteria,1G2QF@1117|Cyanobacteria,1HIRK@1161|Nostocales
Descriptionprotein containing a NRPS condensation (Elongation) domain
Cds size891
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406619.846438-CDS-L-digitata_M_contig101515:7..8981682406619.846438-CDS-L-digitata_M_contig101515:7..898Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101515 8..898 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101515.1.1prot_L-digitata_M_contig101515.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101515 8..898 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101515.1.1

>prot_L-digitata_M_contig101515.1.1 ID=prot_L-digitata_M_contig101515.1.1|Name=mRNA_L-digitata_M_contig101515.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=297bp
SHAPLARFDWLVHAPDHSTIMLTFHHIIGDGISGAYVMRDLLESIAANMG
GSDSFERPILPVRREIEAHVPAALVSRGMWRQFFARIGAMLSWMWRHGKP
KGPLADDPRSSAGGRKVCVIPRVLEPARTQRIVDASRANQTTVHGALSAA
IMLAASEEHGKPTPMLFASPVNVRETMEPPIEDDVGLFVSIGATLHQVDP
GAQDFWELAREARQELRAFIDDGGAFTLLPMQSKALVWWARLLPASWFAK
LVRRVQLPGVGLTNIGRADIASAYGALSIERLGFAVSLGCSREKGAG
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mRNA from alignment at L-digitata_M_contig101515:8..898+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101515.1.1 ID=mRNA_L-digitata_M_contig101515.1.1|Name=mRNA_L-digitata_M_contig101515.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=891bp|location=Sequence derived from alignment at L-digitata_M_contig101515:8..898+ (Laminaria digitata LdigPH10_18mv male)
TCGCACGCACCGCTCGCGCGGTTTGACTGGCTCGTCCACGCGCCCGATCA CTCCACGATCATGCTGACCTTTCACCACATCATCGGCGATGGCATCTCGG GCGCGTATGTGATGCGCGATCTGCTCGAATCGATCGCCGCCAATATGGGG GGCAGTGATTCCTTCGAGAGGCCGATCCTCCCGGTGCGCCGCGAGATCGA GGCGCACGTCCCCGCCGCGCTCGTGTCCAGGGGGATGTGGCGCCAGTTCT TCGCCAGGATCGGCGCGATGCTCTCCTGGATGTGGCGCCACGGCAAGCCG AAGGGGCCCCTCGCCGACGACCCGCGCTCGAGCGCGGGTGGCCGCAAGGT GTGCGTCATCCCCAGGGTGCTCGAGCCCGCGCGCACGCAGCGCATCGTGG ACGCCTCGCGCGCCAACCAGACGACCGTCCATGGCGCCCTCTCCGCAGCG ATCATGCTCGCCGCCAGTGAGGAGCACGGCAAGCCAACGCCGATGCTCTT TGCCTCGCCCGTCAACGTGCGCGAGACGATGGAGCCTCCGATCGAGGATG ACGTGGGGTTGTTCGTCTCGATCGGCGCGACGTTGCACCAGGTCGACCCT GGCGCGCAGGACTTCTGGGAGCTCGCCAGGGAGGCGCGCCAGGAGCTGCG CGCGTTTATCGATGACGGTGGCGCGTTCACGCTCCTGCCGATGCAGAGCA AGGCGCTGGTGTGGTGGGCGAGGTTGTTGCCTGCGAGCTGGTTCGCGAAG CTGGTGCGGCGAGTGCAGCTGCCGGGCGTGGGCCTGACGAACATCGGGCG AGCGGACATCGCGAGCGCGTATGGCGCCCTCTCGATCGAGCGCCTCGGGT TCGCGGTCTCACTCGGGTGCAGTCGTGAAAAGGGTGCAGGT
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Coding sequence (CDS) from alignment at L-digitata_M_contig101515:8..898+

>mRNA_L-digitata_M_contig101515.1.1 ID=mRNA_L-digitata_M_contig101515.1.1|Name=mRNA_L-digitata_M_contig101515.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=891bp|location=Sequence derived from alignment at L-digitata_M_contig101515:8..898+ (Laminaria digitata LdigPH10_18mv male)
TCGCACGCACCGCTCGCGCGGTTTGACTGGCTCGTCCACGCGCCCGATCA
CTCCACGATCATGCTGACCTTTCACCACATCATCGGCGATGGCATCTCGG
GCGCGTATGTGATGCGCGATCTGCTCGAATCGATCGCCGCCAATATGGGG
GGCAGTGATTCCTTCGAGAGGCCGATCCTCCCGGTGCGCCGCGAGATCGA
GGCGCACGTCCCCGCCGCGCTCGTGTCCAGGGGGATGTGGCGCCAGTTCT
TCGCCAGGATCGGCGCGATGCTCTCCTGGATGTGGCGCCACGGCAAGCCG
AAGGGGCCCCTCGCCGACGACCCGCGCTCGAGCGCGGGTGGCCGCAAGGT
GTGCGTCATCCCCAGGGTGCTCGAGCCCGCGCGCACGCAGCGCATCGTGG
ACGCCTCGCGCGCCAACCAGACGACCGTCCATGGCGCCCTCTCCGCAGCG
ATCATGCTCGCCGCCAGTGAGGAGCACGGCAAGCCAACGCCGATGCTCTT
TGCCTCGCCCGTCAACGTGCGCGAGACGATGGAGCCTCCGATCGAGGATG
ACGTGGGGTTGTTCGTCTCGATCGGCGCGACGTTGCACCAGGTCGACCCT
GGCGCGCAGGACTTCTGGGAGCTCGCCAGGGAGGCGCGCCAGGAGCTGCG
CGCGTTTATCGATGACGGTGGCGCGTTCACGCTCCTGCCGATGCAGAGCA
AGGCGCTGGTGTGGTGGGCGAGGTTGTTGCCTGCGAGCTGGTTCGCGAAG
CTGGTGCGGCGAGTGCAGCTGCCGGGCGTGGGCCTGACGAACATCGGGCG
AGCGGACATCGCGAGCGCGTATGGCGCCCTCTCGATCGAGCGCCTCGGGT
TCGCGGTCTCACTCGGGTGCAGTCGTGAAAAGGGTGCAGGT
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