mRNA_L-digitata_M_contig10151.3.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10151.3.1
Unique NamemRNA_L-digitata_M_contig10151.3.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig10151.3.1 vs. uniprot
Match: A0A6H5JRT4_9PHAE (Peptidase A1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRT4_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 5.590e-32
Identity = 60/74 (81.08%), Postives = 69/74 (93.24%), Query Frame = 1
Query:    1 RCKKN-RCGFSQEYTEGSSWSAYQVEDVLWVGELTLEESEKLHH-ESAYGVGFMFGCIESQTGLFKTQLADGIM 216
            RC+++ RCGFSQ Y+EGSSW+AYQVEDVLWVGELTL++SEK++H ESAY V FMFGCIESQTGLFKTQLADGIM
Sbjct:  189 RCQRDKRCGFSQRYSEGSSWTAYQVEDVLWVGELTLQQSEKINHDESAYAVEFMFGCIESQTGLFKTQLADGIM 262          
BLAST of mRNA_L-digitata_M_contig10151.3.1 vs. uniprot
Match: A0A6H5LNK8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LNK8_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.770e-21
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    1 RCKKNR-CGFSQEYTEGSSWSAYQVEDVLWVGELTLEESEKLHHESAYGVGFMFGCIESQTGLFKTQLADGIM 216
            RC+ ++ C  ++ YTE SSW A QV+D+LWVGELTL +S+K H +SA+ V F FGCIES TGLF+TQLADGIM
Sbjct:  173 RCQSDKKCVLTERYTERSSWRAKQVDDLLWVGELTLSDSQK-HDDSAFSVDFTFGCIESLTGLFRTQLADGIM 244          
BLAST of mRNA_L-digitata_M_contig10151.3.1 vs. uniprot
Match: A0A835ZHP7_9STRA (Aspartic peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHP7_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.100e-17
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 1
Query:   16 RCGFSQEYTEGSSWSAYQVEDVLWVGELTLEESEKLHHESAYGVGFMFGCIESQTGLFKTQLADGIM 216
            RC FSQ Y+EGSSWSA+QV D L+ G  TL+++     ++A  + FMFGCI SQTGLF TQLADGIM
Sbjct:   84 RCVFSQSYSEGSSWSAFQVIDKLYTGLTTLQDTPP--DDAALSIDFMFGCINSQTGLFNTQLADGIM 148          
BLAST of mRNA_L-digitata_M_contig10151.3.1 vs. uniprot
Match: A0A7S2WCI1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCI1_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.010e-17
Identity = 42/75 (56.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:    1 RCKKNRCGFSQEYTEGSSWSAYQVEDVLWVGEL---TLEESEKLHHESAYGVGFMFGCIESQTGLFKTQLADGIM 216
            RC K +C F Q YTEGSSW A+Q+EDVLW+G     T + +  + H  A  V FMFGC  S+TGLF+TQ ADGIM
Sbjct:  150 RCVKGKCEFGQSYTEGSSWKAHQMEDVLWLGGSSSDTHDPASSIGH--ALAVRFMFGCQFSETGLFRTQRADGIM 222          
BLAST of mRNA_L-digitata_M_contig10151.3.1 vs. uniprot
Match: A0A7S1VZG5_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VZG5_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 7.210e-17
Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    4 CKKNRCGFSQEYTEGSSWSAYQVEDVLWVGELTLEESEKLHHESAYGVGFMFGCIESQTGLFKTQLADGIM 216
            C+KN+C   Q+YTEGSSW+AY++ED++W G  T  E E L    +  V ++FGC   +TGLF+TQ ADGIM
Sbjct:  181 CEKNKCRAQQKYTEGSSWTAYELEDIVWFG--TDNEIESLEIHMSLAVPYVFGCQTEETGLFQTQYADGIM 249          
BLAST of mRNA_L-digitata_M_contig10151.3.1 vs. uniprot
Match: A0A7S2B1E9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B1E9_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 8.280e-16
Identity = 38/71 (53.52%), Postives = 41/71 (57.75%), Query Frame = 1
Query:    4 CKKNRCGFSQEYTEGSSWSAYQVEDVLWVGELTLEESEKLHHESAYGVGFMFGCIESQTGLFKTQLADGIM 216
            C   RC FSQ YTEGSSW A Q+ D LW G    E            V FMFGC  S+TGLF+TQ ADGIM
Sbjct:   11 CVSRRCEFSQSYTEGSSWKAIQIIDKLWPGGKVAESEPAAEQNHKLAVDFMFGCQFSETGLFRTQKADGIM 81          
BLAST of mRNA_L-digitata_M_contig10151.3.1 vs. uniprot
Match: A0A7S2VFQ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VFQ1_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.700e-15
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    4 CKKNRCGFSQEYTEGSSWSAYQVEDVLWVGEL-TLEESEKLHHESAYGVGFMFGCIESQTGLFKTQLADGIM 216
            C+K +C FSQ YTEGSSW A QV+D  + G    L+  +  HH+  Y + FMFGC+   +GLF TQLADGIM
Sbjct:  256 CEKGKCHFSQAYTEGSSWDAVQVKDHFYCGGSDVLDSVDPAHHK--YAIDFMFGCMTKMSGLFLTQLADGIM 325          
BLAST of mRNA_L-digitata_M_contig10151.3.1 vs. uniprot
Match: A0A7S4KB14_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KB14_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.390e-15
Identity = 38/72 (52.78%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 RCKKNRCGFSQEYTEGSSWSAYQVEDVLWVGELTLEESEKLHHESAYGVGFMFGCIESQTGLFKTQLADGIM 216
            RC  NRC FSQ YTEGSSW AYQ  D  + G   ++  +    +  +   FMFGC  S+TGLF TQLADGIM
Sbjct:  185 RCDANRCTFSQSYTEGSSWRAYQATDSFFAGGGDIDSGDN-PVDRTFATDFMFGCQTSETGLFVTQLADGIM 255          
BLAST of mRNA_L-digitata_M_contig10151.3.1 vs. uniprot
Match: A0A448ZDL6_9STRA (Peptidase A1 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZDL6_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.260e-15
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   16 RCGFSQEYTEGSSWSAYQVEDVLWVGELT--LEESEKLHHESAYGVGFMFGCIESQTGLFKTQLADGIM 216
            RC F+Q YTEGSSW+AYQ  DV++ G     LE  + L  ++ Y + F+FGC+++ TGLFKTQLADGIM
Sbjct:  457 RCTFTQAYTEGSSWTAYQARDVVYCGSGADLLEAVDPL--DTRYAIPFVFGCLKANTGLFKTQLADGIM 523          
BLAST of mRNA_L-digitata_M_contig10151.3.1 vs. uniprot
Match: A0A835ZJF3_9STRA (Aspartic peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJF3_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.420e-15
Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   10 KNRCGFSQEYTEGSSWSAYQVEDVLWVGELTLEESEKLHHESAYGVGFMFGCIESQTGLFKTQLADGIM 216
            ++RC +SQ Y+EGSSW A+QV D ++ G  +  +       +A GVGF FGCI+SQTGLF TQLADGIM
Sbjct:   77 QDRCIYSQSYSEGSSWHAFQVLDTVFAGPASAADVAPAA-AAASGVGFAFGCIDSQTGLFNTQLADGIM 144          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10151.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRT4_9PHAE5.590e-3281.08Peptidase A1 domain-containing protein n=2 Tax=Ect... [more]
A0A6H5LNK8_9PHAE1.770e-2163.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZHP7_9STRA2.100e-1761.19Aspartic peptidase domain-containing protein n=1 T... [more]
A0A7S2WCI1_9STRA4.010e-1756.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1VZG5_9STRA7.210e-1752.11Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2B1E9_9STRA8.280e-1653.52Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2VFQ1_9STRA1.700e-1552.78Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S4KB14_9STRA2.390e-1552.78Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
A0A448ZDL6_9STRA3.260e-1555.07Peptidase A1 domain-containing protein n=1 Tax=Pse... [more]
A0A835ZJF3_9STRA4.420e-1555.07Aspartic peptidase domain-containing protein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10151contigL-digitata_M_contig10151:6670..7565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LJA6
PFAMsAsp,TAXi_C,TAXi_N
Model size218
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.72e-33
EggNOG OGsKOG1339@1|root,KOG1339@2759|Eukaryota
Descriptionaspartic-type endopeptidase activity
Cds size216
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406619.7647989-CDS-L-digitata_M_contig10151:6669..67381682406619.7647989-CDS-L-digitata_M_contig10151:6669..6738Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10151 6670..6738 +
1682406619.7738311-CDS-L-digitata_M_contig10151:7416..75631682406619.7738311-CDS-L-digitata_M_contig10151:7416..7563Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10151 7417..7563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10151.3.1prot_L-digitata_M_contig10151.3.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10151 6670..7563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10151.3.1

>prot_L-digitata_M_contig10151.3.1 ID=prot_L-digitata_M_contig10151.3.1|Name=mRNA_L-digitata_M_contig10151.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=72bp
RCKKNRCGFSQEYTEGSSWSAYQVEDVLWVGELTLEESEKLHHESAYGVG
FMFGCIESQTGLFKTQLADGIM
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mRNA from alignment at L-digitata_M_contig10151:6670..7565+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10151.3.1 ID=mRNA_L-digitata_M_contig10151.3.1|Name=mRNA_L-digitata_M_contig10151.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=896bp|location=Sequence derived from alignment at L-digitata_M_contig10151:6670..7565+ (Laminaria digitata LdigPH10_18mv male)
AGGTGCAAAAAGAACCGCTGCGGCTTCAGCCAGGAATACACCGAAGGCAG CTCTTGGAGTGCCTACCAGGTAAGCCGCGGCAAGACAAAACGCACACCTC GAGCGAGGAGTAGAAGCCAGCATGGCCGCATGGGGTGATCATCTGACTAA TCCGCTGCCAGTGGTTGTTTCGGTGGTCTTTGGTATGTGAAGGGCTTGGT ATGTGAAGGGCCGCGACAGGTTTCACGCGTGGGTGCTACAGCAGTACTGC AACTGTGCTCGCGGTGTGAAGCGTTGCATGCTGACTGCTTCGTGTCGTAT TAATAGTATTATTACACGCACATCAGCTGTGAGTTTTGGTGCCTCTACAG CGGTAGAGAAAGGCGCATGCTGCTGCTAGTGTTGTTGCTGCTGCTGCTGC TGCTGCTGCTTCTGCTCTTGCTGCTGCTTCTGCTAATGCTGATGCTGCTT CTGCTGCTTCCGCTGATGCTCCTTCTGGTGCTGCTGCTGATGTTCCCAGA ACTCTGCTCTGTTTCCAATGACTTTCCGGTAGTCGCCGTTGGTTAAATTA AGGTGTGCAAGGGGGGGACGAGGTGATTGGTTCGGGTTTTCTCCTCCCGC CAGCAGCAGAGGTCCCTCAGAATGATCCCTCAGAATACAATCGAATGCAA TCGACGCTGACCGACAGCTCTGCACGTTTTTGCGTTTTCTTGCACGTACG CTGCCCGGTACTCGATACCATACATACTACTGCACGAATCCGTCCAGGTG GAGGATGTTTTGTGGGTTGGAGAGCTGACCTTAGAAGAATCGGAGAAGCT GCACCATGAGTCGGCTTATGGGGTAGGTTTTATGTTTGGGTGCATCGAGA GCCAAACGGGCCTGTTCAAGACTCAGCTTGCTGACGGCATCATGGG
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Coding sequence (CDS) from alignment at L-digitata_M_contig10151:6670..7565+

>mRNA_L-digitata_M_contig10151.3.1 ID=mRNA_L-digitata_M_contig10151.3.1|Name=mRNA_L-digitata_M_contig10151.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=216bp|location=Sequence derived from alignment at L-digitata_M_contig10151:6670..7565+ (Laminaria digitata LdigPH10_18mv male)
AGGTGCAAAAAGAACCGCTGCGGCTTCAGCCAGGAATACACCGAAGGCAG
CTCTTGGAGTGCCTACCAGGTGGAGGATGTTTTGTGGGTTGGAGAGCTGA
CCTTAGAAGAATCGGAGAAGCTGCACCATGAGTCGGCTTATGGGGTAGGT
TTTATGTTTGGGTGCATCGAGAGCCAAACGGGCCTGTTCAAGACTCAGCT
TGCTGACGGCATCATG
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