mRNA_L-digitata_M_contig101370.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101370.1.1
Unique NamemRNA_L-digitata_M_contig101370.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101370.1.1 vs. uniprot
Match: A0A6H5JB56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB56_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.860e-13
Identity = 33/37 (89.19%), Postives = 37/37 (100.00%), Query Frame = 1
Query:    7 EQEHLVKHSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 117
            ++EHLVKHSGKLVLLDKLLPRLK+QGHRVLLFSQFK+
Sbjct:  792 DKEHLVKHSGKLVLLDKLLPRLKQQGHRVLLFSQFKI 828          
BLAST of mRNA_L-digitata_M_contig101370.1.1 vs. uniprot
Match: D8LHJ8_ECTSI (CHROMODOMAIN HELICASE DNA BINDING n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ8_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 2.860e-13
Identity = 33/37 (89.19%), Postives = 37/37 (100.00%), Query Frame = 1
Query:    7 EQEHLVKHSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 117
            ++EHLVKHSGKLVLLDKLLPRLK+QGHRVLLFSQFK+
Sbjct: 1141 DKEHLVKHSGKLVLLDKLLPRLKQQGHRVLLFSQFKI 1177          
BLAST of mRNA_L-digitata_M_contig101370.1.1 vs. uniprot
Match: A0A6H5KR34_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR34_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.000e-12
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1
Query:   10 QEHLVKHSGKLVLLDKLLPRLKEQGHRVLLFSQFK 114
            QEHLVKHSGKLVLLDKLLPRLK QGHRVLLFSQFK
Sbjct:  730 QEHLVKHSGKLVLLDKLLPRLKTQGHRVLLFSQFK 764          
BLAST of mRNA_L-digitata_M_contig101370.1.1 vs. uniprot
Match: D8LDG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG9_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.370e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1
Query:   10 QEHLVKHSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 117
            +EHLVKHSGKLVLLDKLLPRLK QGHRVLLFSQFK+
Sbjct:  731 KEHLVKHSGKLVLLDKLLPRLKTQGHRVLLFSQFKI 766          
BLAST of mRNA_L-digitata_M_contig101370.1.1 vs. uniprot
Match: A0A1Z5KJW4_FISSO (Chromodomain-helicase-DNA-binding protein 7 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJW4_FISSO)

HSP 1 Score: 63.9 bits (154), Expect = 7.910e-11
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 1
Query:    7 EQEHLVKHSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 117
            E E+LVK SGKLVLLDKLLPRLKE+GHRVL+FSQFK+
Sbjct:  720 EVEYLVKASGKLVLLDKLLPRLKEEGHRVLIFSQFKI 756          
BLAST of mRNA_L-digitata_M_contig101370.1.1 vs. uniprot
Match: K3W860_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W860_GLOUD)

HSP 1 Score: 61.6 bits (148), Expect = 5.180e-10
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 1
Query:    1 RYEQEHLVKHSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 117
            R  QE LV  SGKLVLLDKLLPRLKE GHRVL+FSQFK+
Sbjct:  624 RQAQEILVNSSGKLVLLDKLLPRLKENGHRVLIFSQFKI 662          
BLAST of mRNA_L-digitata_M_contig101370.1.1 vs. uniprot
Match: A0A5D6Y221_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y221_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 9.650e-10
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 1
Query:    1 RYEQEHLVKHSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 117
            R  QE LV  SGKLVLLDKLLPRLKE GHRVL+FSQFK+
Sbjct:  805 RQVQELLVTSSGKLVLLDKLLPRLKENGHRVLIFSQFKI 843          
BLAST of mRNA_L-digitata_M_contig101370.1.1 vs. uniprot
Match: A0A1W0A344_9STRA (Chromodomain protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A344_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.320e-9
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 1
Query:   10 QEHLVKHSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 117
            QE LV+  GKL+LLDKLLPRL+EQGHRVL+FSQFK+
Sbjct:  660 QEQLVQSCGKLILLDKLLPRLREQGHRVLIFSQFKI 695          
BLAST of mRNA_L-digitata_M_contig101370.1.1 vs. uniprot
Match: A0A067BU19_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BU19_SAPPC)

HSP 1 Score: 60.5 bits (145), Expect = 1.320e-9
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 1
Query:   10 QEHLVKHSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 117
            QE LV+  GKL+LLDKLLPRLKEQGHRVL+FSQFK+
Sbjct:  672 QELLVQSCGKLILLDKLLPRLKEQGHRVLIFSQFKI 707          
BLAST of mRNA_L-digitata_M_contig101370.1.1 vs. uniprot
Match: A0A7S2YFV7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YFV7_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.320e-9
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1
Query:    7 EQEHLVKHSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 117
            E + LVK SGK VLLDKLLPRLKE+GHRVL+FSQFK+
Sbjct:  372 EPDFLVKGSGKFVLLDKLLPRLKEEGHRVLIFSQFKI 408          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101370.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JB56_9PHAE2.860e-1389.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHJ8_ECTSI2.860e-1389.19CHROMODOMAIN HELICASE DNA BINDING n=1 Tax=Ectocarp... [more]
A0A6H5KR34_9PHAE1.000e-1297.14Helicase ATP-binding domain-containing protein n=1... [more]
D8LDG9_ECTSI1.370e-1291.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Z5KJW4_FISSO7.910e-1183.78Chromodomain-helicase-DNA-binding protein 7 n=2 Ta... [more]
K3W860_GLOUD5.180e-1079.49Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6Y221_9STRA9.650e-1079.49Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1W0A344_9STRA1.320e-977.78Chromodomain protein n=1 Tax=Thraustotheca clavata... [more]
A0A067BU19_SAPPC1.320e-980.56Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A7S2YFV7_9STRA1.320e-978.38Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101370contigL-digitata_M_contig101370:688..804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LHJ8
PFAMsChromo,FYRC,FYRN,Helicase_C,SNF2_N
Model size117
Max annot lvl2759|Eukaryota
KEGG koko:K14436,ko:K14437
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.69e-14
EggNOG OGsCOG0553@1|root,KOG0384@2759|Eukaryota
EC3.6.4.12
Descriptionhelicase activity
Cds size117
COG categoryKL
BRITEko00000,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406618.238798-CDS-L-digitata_M_contig101370:687..8041682406618.238798-CDS-L-digitata_M_contig101370:687..804Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101370 688..804 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101370.1.1prot_L-digitata_M_contig101370.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101370 688..804 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101370.1.1

>prot_L-digitata_M_contig101370.1.1 ID=prot_L-digitata_M_contig101370.1.1|Name=mRNA_L-digitata_M_contig101370.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=39bp
RYEQEHLVKHSGKLVLLDKLLPRLKEQGHRVLLFSQFKV
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mRNA from alignment at L-digitata_M_contig101370:688..804+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101370.1.1 ID=mRNA_L-digitata_M_contig101370.1.1|Name=mRNA_L-digitata_M_contig101370.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=117bp|location=Sequence derived from alignment at L-digitata_M_contig101370:688..804+ (Laminaria digitata LdigPH10_18mv male)
CGCTACGAGCAGGAGCACTTGGTGAAGCACTCCGGCAAGCTGGTGCTGCT GGACAAGCTATTGCCGAGGCTGAAGGAGCAGGGGCACCGCGTCCTCCTGT TCAGTCAGTTCAAGGTG
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Coding sequence (CDS) from alignment at L-digitata_M_contig101370:688..804+

>mRNA_L-digitata_M_contig101370.1.1 ID=mRNA_L-digitata_M_contig101370.1.1|Name=mRNA_L-digitata_M_contig101370.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=117bp|location=Sequence derived from alignment at L-digitata_M_contig101370:688..804+ (Laminaria digitata LdigPH10_18mv male)
CGCTACGAGCAGGAGCACTTGGTGAAGCACTCCGGCAAGCTGGTGCTGCT
GGACAAGCTATTGCCGAGGCTGAAGGAGCAGGGGCACCGCGTCCTCCTGT
TCAGTCAGTTCAAGGTG
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