mRNA_L-digitata_M_contig101370.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig101370.1.1 vs. uniprot
Match: A0A6H5JB56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB56_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 2.860e-13 Identity = 33/37 (89.19%), Postives = 37/37 (100.00%), Query Frame = 1
Query: 7 EQEHLVKHSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 117
++EHLVKHSGKLVLLDKLLPRLK+QGHRVLLFSQFK+
Sbjct: 792 DKEHLVKHSGKLVLLDKLLPRLKQQGHRVLLFSQFKI 828
BLAST of mRNA_L-digitata_M_contig101370.1.1 vs. uniprot
Match: D8LHJ8_ECTSI (CHROMODOMAIN HELICASE DNA BINDING n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ8_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 2.860e-13 Identity = 33/37 (89.19%), Postives = 37/37 (100.00%), Query Frame = 1
Query: 7 EQEHLVKHSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 117
++EHLVKHSGKLVLLDKLLPRLK+QGHRVLLFSQFK+
Sbjct: 1141 DKEHLVKHSGKLVLLDKLLPRLKQQGHRVLLFSQFKI 1177
BLAST of mRNA_L-digitata_M_contig101370.1.1 vs. uniprot
Match: A0A6H5KR34_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR34_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 1.000e-12 Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1
Query: 10 QEHLVKHSGKLVLLDKLLPRLKEQGHRVLLFSQFK 114
QEHLVKHSGKLVLLDKLLPRLK QGHRVLLFSQFK
Sbjct: 730 QEHLVKHSGKLVLLDKLLPRLKTQGHRVLLFSQFK 764
BLAST of mRNA_L-digitata_M_contig101370.1.1 vs. uniprot
Match: D8LDG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG9_ECTSI) HSP 1 Score: 68.9 bits (167), Expect = 1.370e-12 Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1
Query: 10 QEHLVKHSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 117
+EHLVKHSGKLVLLDKLLPRLK QGHRVLLFSQFK+
Sbjct: 731 KEHLVKHSGKLVLLDKLLPRLKTQGHRVLLFSQFKI 766
BLAST of mRNA_L-digitata_M_contig101370.1.1 vs. uniprot
Match: A0A1Z5KJW4_FISSO (Chromodomain-helicase-DNA-binding protein 7 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJW4_FISSO) HSP 1 Score: 63.9 bits (154), Expect = 7.910e-11 Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 1
Query: 7 EQEHLVKHSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 117
E E+LVK SGKLVLLDKLLPRLKE+GHRVL+FSQFK+
Sbjct: 720 EVEYLVKASGKLVLLDKLLPRLKEEGHRVLIFSQFKI 756
BLAST of mRNA_L-digitata_M_contig101370.1.1 vs. uniprot
Match: K3W860_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W860_GLOUD) HSP 1 Score: 61.6 bits (148), Expect = 5.180e-10 Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 1
Query: 1 RYEQEHLVKHSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 117
R QE LV SGKLVLLDKLLPRLKE GHRVL+FSQFK+
Sbjct: 624 RQAQEILVNSSGKLVLLDKLLPRLKENGHRVLIFSQFKI 662
BLAST of mRNA_L-digitata_M_contig101370.1.1 vs. uniprot
Match: A0A5D6Y221_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y221_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 9.650e-10 Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 1
Query: 1 RYEQEHLVKHSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 117
R QE LV SGKLVLLDKLLPRLKE GHRVL+FSQFK+
Sbjct: 805 RQVQELLVTSSGKLVLLDKLLPRLKENGHRVLIFSQFKI 843
BLAST of mRNA_L-digitata_M_contig101370.1.1 vs. uniprot
Match: A0A1W0A344_9STRA (Chromodomain protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A344_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.320e-9 Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 1
Query: 10 QEHLVKHSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 117
QE LV+ GKL+LLDKLLPRL+EQGHRVL+FSQFK+
Sbjct: 660 QEQLVQSCGKLILLDKLLPRLREQGHRVLIFSQFKI 695
BLAST of mRNA_L-digitata_M_contig101370.1.1 vs. uniprot
Match: A0A067BU19_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BU19_SAPPC) HSP 1 Score: 60.5 bits (145), Expect = 1.320e-9 Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 1
Query: 10 QEHLVKHSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 117
QE LV+ GKL+LLDKLLPRLKEQGHRVL+FSQFK+
Sbjct: 672 QELLVQSCGKLILLDKLLPRLKEQGHRVLIFSQFKI 707
BLAST of mRNA_L-digitata_M_contig101370.1.1 vs. uniprot
Match: A0A7S2YFV7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YFV7_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.320e-9 Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1
Query: 7 EQEHLVKHSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 117
E + LVK SGK VLLDKLLPRLKE+GHRVL+FSQFK+
Sbjct: 372 EPDFLVKGSGKFVLLDKLLPRLKEEGHRVLIFSQFKI 408 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101370.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig101370.1.1 >prot_L-digitata_M_contig101370.1.1 ID=prot_L-digitata_M_contig101370.1.1|Name=mRNA_L-digitata_M_contig101370.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=39bp RYEQEHLVKHSGKLVLLDKLLPRLKEQGHRVLLFSQFKVback to top mRNA from alignment at L-digitata_M_contig101370:688..804+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig101370.1.1 ID=mRNA_L-digitata_M_contig101370.1.1|Name=mRNA_L-digitata_M_contig101370.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=117bp|location=Sequence derived from alignment at L-digitata_M_contig101370:688..804+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig101370:688..804+ >mRNA_L-digitata_M_contig101370.1.1 ID=mRNA_L-digitata_M_contig101370.1.1|Name=mRNA_L-digitata_M_contig101370.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=117bp|location=Sequence derived from alignment at L-digitata_M_contig101370:688..804+ (Laminaria digitata LdigPH10_18mv male)back to top |