mRNA_L-digitata_M_contig10136.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10136.1.1
Unique NamemRNA_L-digitata_M_contig10136.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig10136.1.1 vs. uniprot
Match: Q7XAJ9_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ9_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.010e-25
Identity = 45/51 (88.24%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:   22 QVRGFCKNLSNRELFDEVNVYGNIYDSDIHHNHFGVYTYGHQQGDWRRNKM 174
            +VRGFCK+ SN E+FDEVNVYGNIYDSDIHHNHFGVYTYGH+QGDWRRNKM
Sbjct:   51 KVRGFCKDGSNPEVFDEVNVYGNIYDSDIHHNHFGVYTYGHEQGDWRRNKM 101
[Close]
BLAST of mRNA_L-digitata_M_contig10136.1.1 vs. uniprot
Match: Q7XAK2_9PHAE (Mannuronan C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.110e-24
Identity = 45/51 (88.24%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:   22 QVRGFCKNLSNRELFDEVNVYGNIYDSDIHHNHFGVYTYGHQQGDWRRNKM 174
            +VRGFCK+ SN E+FDEVNVYGNIYDSDIHHNHFGVYTYGH+QGDWRRNKM
Sbjct:  228 KVRGFCKDGSNPEVFDEVNVYGNIYDSDIHHNHFGVYTYGHEQGDWRRNKM 278
[Close]
BLAST of mRNA_L-digitata_M_contig10136.1.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 6.250e-23
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:   22 QVRGFCKNLSNRELFDEVNVYGNIYDSDIHHNHFGVYTYGHQQGDWRRNKM 174
            +VRGFC +  N ELFD+VNVYGNIYDSDIHHN+FGVYTYGHQQGDWRRNKM
Sbjct:  199 KVRGFCVDKGNPELFDDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKM 249
[Close]
BLAST of mRNA_L-digitata_M_contig10136.1.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA)

HSP 1 Score: 99.0 bits (245), Expect = 6.970e-23
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:   22 QVRGFCKNLSNRELFDEVNVYGNIYDSDIHHNHFGVYTYGHQQGDWRRNKM 174
            +VRG C++LSN E+FD VNVYGNIYDSDIHHN+FGVYTYGH+QGDWRRNKM
Sbjct:  225 KVRGLCRDLSNLEVFDAVNVYGNIYDSDIHHNYFGVYTYGHEQGDWRRNKM 275
[Close]
BLAST of mRNA_L-digitata_M_contig10136.1.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 9.580e-23
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:   22 QVRGFCKNLSNRELFDEVNVYGNIYDSDIHHNHFGVYTYGHQQGDWRRNKM 174
            +VRGFC + SN +LF++VNVYGNIYDSDIHHN+FGVYTYGHQQGDWRRNKM
Sbjct:  225 KVRGFCVDKSNHDLFEDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKM 275
[Close]
BLAST of mRNA_L-digitata_M_contig10136.1.1 vs. uniprot
Match: A0A6H5KES9_9PHAE (MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KES9_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 9.710e-23
Identity = 40/51 (78.43%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:   22 QVRGFCKNLSNRELFDEVNVYGNIYDSDIHHNHFGVYTYGHQQGDWRRNKM 174
            +VRGFC++ SN E+FD+VNVYGN+YDSDIHH +FG+YTYGHQQGDWRRNKM
Sbjct:  122 KVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKM 172
[Close]
BLAST of mRNA_L-digitata_M_contig10136.1.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 5.360e-22
Identity = 40/51 (78.43%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:   22 QVRGFCKNLSNRELFDEVNVYGNIYDSDIHHNHFGVYTYGHQQGDWRRNKM 174
            +VRGFC++ SN E+FD+VNVYGN+YDSDIHH +FG+YTYGHQQGDWRRNKM
Sbjct:  228 KVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKM 278
[Close]
BLAST of mRNA_L-digitata_M_contig10136.1.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 5.650e-22
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:   22 QVRGFCKNLSNRELFDEVNVYGNIYDSDIHHNHFGVYTYGHQQGDWRRNKM 174
            +VRGFCK+ SN  +FDEVNVYGN+YDSDIHH  FG+YTYGHQQGDWRRNKM
Sbjct:  231 KVRGFCKDKSNPGIFDEVNVYGNMYDSDIHHMRFGLYTYGHQQGDWRRNKM 281
[Close]
BLAST of mRNA_L-digitata_M_contig10136.1.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 6.700e-22
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:   22 QVRGFCKNLSNRELFDEVNVYGNIYDSDIHHNHFGVYTYGHQQGDWRRNKM 174
            +VRGFCK+ SN E+FD+VNVYGN+YDSDIHH  FG+YTYGHQQGDWRRNKM
Sbjct:  232 KVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKM 282
[Close]
BLAST of mRNA_L-digitata_M_contig10136.1.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 9.110e-22
Identity = 40/51 (78.43%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:   22 QVRGFCKNLSNRELFDEVNVYGNIYDSDIHHNHFGVYTYGHQQGDWRRNKM 174
            +VRGFC++ SN E+FD+VNVYGN+YDSDIHH +FG+YTYGHQQGDWRRNKM
Sbjct:  228 KVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKM 278
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10136.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q7XAJ9_9PHAE2.010e-2588.24Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
Q7XAK2_9PHAE1.110e-2488.24Mannuronan C-5-epimerase n=2 Tax=Laminaria digitat... [more]
Q7XAJ8_9PHAE6.250e-2384.31Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
A8CEP1_SACJA6.970e-2382.35Mannuronan C-5 epimerase n=1 Tax=Saccharina japoni... [more]
Q7XAJ7_9PHAE9.580e-2382.35Mannuronan C-5-epimerase n=1 Tax=Laminaria digitat... [more]
A0A6H5KES9_9PHAE9.710e-2378.43MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
D7FXE5_ECTSI5.360e-2278.43Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JU98_9PHAE5.650e-2280.39MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FXE4_ECTSI6.700e-2280.39Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G339_ECTSI9.110e-2278.43Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10136contigL-digitata_M_contig10136:3..176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LC73
PFAMsWSC
Model size174
Max annot lvl2759|Eukaryota
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue5.89e-14
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
Descriptionprotein xylosyltransferase activity
Cds size174
COG categoryU
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406618.028954-CDS-L-digitata_M_contig10136:2..1761682406618.028954-CDS-L-digitata_M_contig10136:2..176Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10136 3..176 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10136.1.1prot_L-digitata_M_contig10136.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10136 3..176 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10136.1.1

>prot_L-digitata_M_contig10136.1.1 ID=prot_L-digitata_M_contig10136.1.1|Name=mRNA_L-digitata_M_contig10136.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=58bp
MNISTFDQVRGFCKNLSNRELFDEVNVYGNIYDSDIHHNHFGVYTYGHQQ
GDWRRNKM
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mRNA from alignment at L-digitata_M_contig10136:3..176-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10136.1.1 ID=mRNA_L-digitata_M_contig10136.1.1|Name=mRNA_L-digitata_M_contig10136.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=174bp|location=Sequence derived from alignment at L-digitata_M_contig10136:3..176- (Laminaria digitata LdigPH10_18mv male)
ATGAACATCTCTACGTTCGACCAGGTTCGAGGGTTCTGCAAAAACCTCAG
TAACCGCGAATTGTTCGACGAGGTCAACGTCTACGGCAACATCTACGACT
CGGACATCCACCACAACCACTTCGGGGTCTACACGTACGGCCACCAACAG
GGAGACTGGAGGAGGAACAAGATG
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Coding sequence (CDS) from alignment at L-digitata_M_contig10136:3..176-

>mRNA_L-digitata_M_contig10136.1.1 ID=mRNA_L-digitata_M_contig10136.1.1|Name=mRNA_L-digitata_M_contig10136.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=174bp|location=Sequence derived from alignment at L-digitata_M_contig10136:3..176- (Laminaria digitata LdigPH10_18mv male)
ATGAACATCTCTACGTTCGACCAGGTTCGAGGGTTCTGCAAAAACCTCAG
TAACCGCGAATTGTTCGACGAGGTCAACGTCTACGGCAACATCTACGACT
CGGACATCCACCACAACCACTTCGGGGTCTACACGTACGGCCACCAACAG
GGAGACTGGAGGAGGAACAAGATG
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