mRNA_L-digitata_M_contig101350.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig101350.1.1 vs. uniprot
Match: A0A3C1KJT9_9GAMM (Integrase n=4 Tax=Halieaceae TaxID=1706372 RepID=A0A3C1KJT9_9GAMM) HSP 1 Score: 521 bits (1343), Expect = 1.420e-184 Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 1
Query: 1 ASRVRQRMAAVFDWSRAAKIRTRPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAVWRLSADRMKADKPHVVPLSCAAVDLLMSLPRDNPARLVFPNSKGLELSDMALSKLLKDVHAADLKNHGPGYIDPQLDRIATPHGTARSSFKDWCRQHNRFPDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRYCEPARSPST 768
ASRVRQRMAAVFDWSRAAKIRTRPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAVWRLSADRMKADKPHVVPLSCAAVDLLMSLPRDNPARLVFPNSKGLELSDMALSKLLKDVHAADLKNHGPGYIDPQLDRIATPHGTARSSFKDWCRQHNRFPDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRYCEPARSPST
Sbjct: 170 ASRVRQRMAAVFDWSRAAKIRTRPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAVWRLSADRMKADKPHVVPLSCAAVDLLMSLPRDNPARLVFPNSKGLELSDMALSKLLKDVHAADLKNHGPGYIDPQLDRIATPHGTARSSFKDWCRQHNRFPDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRYCEPARSPST 425
BLAST of mRNA_L-digitata_M_contig101350.1.1 vs. uniprot
Match: A0A6C0U6N8_9GAMM (Integrase arm-type DNA-binding domain-containing protein n=2 Tax=Kineobactrum salinum TaxID=2708301 RepID=A0A6C0U6N8_9GAMM) HSP 1 Score: 447 bits (1149), Expect = 6.600e-155 Identity = 220/253 (86.96%), Postives = 233/253 (92.09%), Query Frame = 1
Query: 1 ASRVRQRMAAVFDWSRAAKIRTRPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAVWRLSADRMKADKPHVVPLSCAAVDLLMSLPRDNPARLVFPNSKGLELSDMALSKLLKDVHAADLKNHGPGYIDPQLDRIATPHGTARSSFKDWCRQHNRFPDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRYCEPARS 759
ASRVRQRMAAVFDW+RAAKIRT PNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPV+DVPRLM+D+ RDAPS ALRFA+L AARS EVRLATW+EIDLDA VWRLSADRMKADK H VPLS AAV+LL +LPRDNPA LVFPNSKG+ELSDMALSKL+KD HAADLK GPGYIDP LDRIATPHGTARSSFKDWCRQ+NRFPDEWSELALAHVNSD TR AYAR ELLEERRGMMEAWG+YCEP+RS
Sbjct: 173 ASRVRQRMAAVFDWARAAKIRTAPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVADVPRLMSDIGTRDAPSAQALRFAVLAAARSGEVRLATWDEIDLDAGVWRLSADRMKADKAHTVPLSRAAVELLKALPRDNPAGLVFPNSKGVELSDMALSKLMKDAHAADLKKGGPGYIDPILDRIATPHGTARSSFKDWCRQNNRFPDEWSELALAHVNSDATRTAYARNELLEERRGMMEAWGQYCEPSRS 425
BLAST of mRNA_L-digitata_M_contig101350.1.1 vs. uniprot
Match: A0A2D8IUM3_9GAMM (Integrase n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2D8IUM3_9GAMM) HSP 1 Score: 399 bits (1024), Expect = 5.710e-136 Identity = 194/250 (77.60%), Postives = 217/250 (86.80%), Query Frame = 1
Query: 1 ASRVRQRMAAVFDWSRAAKIRTRPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAVWRLSADRMKADKPHVVPLSCAAVDLLMSLPRDNPARLVFPNSKGLELSDMALSKLLKDVHAADLKNHGPGYIDPQLDRIATPHGTARSSFKDWCRQHNRFPDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRYCEP 750
ASRVRQRMAAVFDW+RAAKIRT PNPAAW+ CLEPLLP T +LRKTAGKA++HH ALPVS+VPR MAD+ RD PS +ALRFAILT ARS E RLATW+EIDLDA VWRL ADRMK + H VPLS AA+++L ++P+DNPA LVFPNSKG+ELS+ ALSKL+KD HAADLK G GY+DP+ +RIATPHGTARSSFK+W RQ RFPDEWSELALAHVNSDQTRAAYAR ELLEERRGMMEAWG YCEP
Sbjct: 170 ASRVRQRMAAVFDWARAAKIRTAPNPAAWQGCLEPLLPKTDRLRKTAGKAKRHHPALPVSEVPRFMADMATRDTPSAYALRFAILTGARSGEARLATWDEIDLDARVWRLPADRMKEGQQHTVPLSDAAIEILEAMPKDNPAGLVFPNSKGVELSNTALSKLMKDAHAADLKQGGIGYLDPRQNRIATPHGTARSSFKEWSRQGGRFPDEWSELALAHVNSDQTRAAYARSELLEERRGMMEAWGSYCEP 419
BLAST of mRNA_L-digitata_M_contig101350.1.1 vs. uniprot
Match: A0A0F2NTS6_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium BRH_c0 TaxID=1629722 RepID=A0A0F2NTS6_9GAMM) HSP 1 Score: 384 bits (986), Expect = 4.760e-130 Identity = 190/255 (74.51%), Postives = 213/255 (83.53%), Query Frame = 1
Query: 1 ASRVRQRMAAVFDWSRAAKIRTRPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAVWRLSADRMKADKPHVVPLSCAAVDLLMSLPRDNPARLVFPNSKGLELSDMALSKLLKDVHAADLKNHGPGYIDPQLDRIATPHGTARSSFKDWCRQHNRFPDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRYCEPARSPS 765
ASR+RQRMAAVFDW+ AAK+RT NPAAWK CL+ LP T K++K G RKHH ALPV+++PRLMADL RD S ALRF ILTAARS EVRLATW+EID++A VWRLSADRMKADKPH VPLS AAV +L SLPRDNPA LVFP+ +G+E+SDM LSKLLKDVHAAD+K GY+DP RIATPHGTARS+FKDW RQ+ RFPDEWSELALAHVNSDQTRAAYARGELLEERR +MEAWGRYCEP + S
Sbjct: 180 ASRLRQRMAAVFDWALAAKVRTAANPAAWKGCLDAQLPKTEKVKKRMGNGRKHHPALPVAELPRLMADLATRDNTSAKALRFTILTAARSGEVRLATWHEIDMNARVWRLSADRMKADKPHAVPLSDAAVAILESLPRDNPAGLVFPSVRGIEMSDMTLSKLLKDVHAADVKRGEAGYLDPVQGRIATPHGTARSTFKDWSRQNGRFPDEWSELALAHVNSDQTRAAYARGELLEERRSLMEAWGRYCEPPDAQS 434
BLAST of mRNA_L-digitata_M_contig101350.1.1 vs. uniprot
Match: A0A4R7JVI7_9GAMM (Integrase n=1 Tax=Halospina denitrificans TaxID=332522 RepID=A0A4R7JVI7_9GAMM) HSP 1 Score: 293 bits (751), Expect = 2.910e-94 Identity = 151/252 (59.92%), Postives = 190/252 (75.40%), Query Frame = 1
Query: 1 ASRVRQRMAAVFDWSRAAK--IRTRP-NPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAVWRLSADRMKADKPHVVPLSCAAVDLLMSLPRDNPARLVFPNSKGLELSDMALSKLLKDVHAADLKNHGPGYIDPQLD-RIATPHGTARSSFKDWCRQHNRFPDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRYC 744
A R+RQRM AVF+++ IRT P NPA W++ L+ LPA ++K +GKA +HH ALP D+PRLMADL ++ A AL+FAILT ARS EVR ATW+EIDL W LSA+RMKAD+PH VPLS AAV+LL ++P+ P L+F +++G +SD LSKL+KD+HAADLK G GY DP+ D RIATPHGTARSSFK+W R+ R+PDE+SE+ALAHVN+D+TR+AYAR ELL ERR MM+ W RYC
Sbjct: 197 ADRIRQRMGAVFEYALTGDKPIRTNPVNPARWEN-LKGKLPAFQAVKKKSGKANRHHPALPYKDMPRLMADLRSKHANGAKALQFAILTGARSEEVRKATWDEIDLTEKTWHLSAERMKADRPHTVPLSDAAVELLRTMPKKTPGNLIFGSAQGKVMSDNTLSKLIKDMHAADLKRGGDGYTDPKQDNRIATPHGTARSSFKEWARKATRYPDEYSEIALAHVNTDETRSAYARDELLAERRPMMQEWARYC 447
BLAST of mRNA_L-digitata_M_contig101350.1.1 vs. uniprot
Match: A0A396S7N8_9PSED (Integrase n=1 Tax=Pseudomonas jilinensis TaxID=2078689 RepID=A0A396S7N8_9PSED) HSP 1 Score: 284 bits (727), Expect = 1.100e-90 Identity = 153/257 (59.53%), Postives = 181/257 (70.43%), Query Frame = 1
Query: 1 ASRVRQRMAAVFDWSRAAKIRTRPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAVWRLSADRMKADKPHVVPLSCAAVDLLMSLPRDNPARLVFPNSKGLELSDMALSKLLKDVHAADLKNHGPGYIDPQLDRIATPHGTARSSFKDWCRQ----------HNRFPDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRY 741
A+RVRQR+ V D++ AA++R+ PNPA K L LLP +A +RK AG +KHH +PV + MADL R + S AL FA+LTAARS EVR ATW E DL A VW LSA+RMKAD+PH VPLS AAV LL LPR + A LVFP KG ELSD L K+++D+H A K G GY+DP RIATPHGTARSSFKDW R+ + FPDEW+ELALAHVN+DQTRAAYAR ELLEERR +M+AWG Y
Sbjct: 188 ATRVRQRIGTVIDYATAAELRSGPNPADMKGNLRELLPKSAAVRKKAG-GKKHHPRVPVDGMTAFMADLRTRTSISAVALEFAVLTAARSGEVRGATWGEFDLKARVWSLSAERMKADRPHKVPLSDAAVALLERLPRGSAADLVFPGFKGRELSDATLGKMIRDMHEAQTKAGGAGYLDPDQGRIATPHGTARSSFKDWSRRSTSRVMADGNRSSFPDEWAELALAHVNNDQTRAAYARDELLEERRELMQAWGEY 443
BLAST of mRNA_L-digitata_M_contig101350.1.1 vs. uniprot
Match: UPI00123C18DB (integrase arm-type DNA-binding domain-containing protein n=1 Tax=Pseudomonas profundi TaxID=1981513 RepID=UPI00123C18DB) HSP 1 Score: 279 bits (714), Expect = 1.020e-88 Identity = 155/264 (58.71%), Postives = 187/264 (70.83%), Query Frame = 1
Query: 1 ASRVRQRMAAVFDWSRAAKIRTRPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAVWRLSADRMKADKPHVVPLSCAAVDLLMSLPRDNPARLVFPNSKGLELSDMALSKLLKDVHAADLKNHGPGYIDP-QLDRIATPHGTARSSFKDWCRQ----------HNRFPDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRYCEPARS 759
A+RVRQR+ +V D++ A ++R PNPA K L LP + +RK +G +KHHA +PV +PR +ADL R + S AL FA+LTAARS EVR ATW EIDL+A VWRLSA+RMKAD+ H VPLS AAV LL SLPR LVF NSKG LSD L K+LKD+HAA ++ G GY DP Q RIATPHGTARSSFKDW R+ + FPDEWSELALAH+NSD+TR+AYAR ELLEERR +M+ W YC+ A+S
Sbjct: 189 ATRVRQRIGSVLDFAIAKELRPGPNPADIKGPLGEQLPKSKGVRKKSG-GKKHHARVPVEAMPRFLADLRTRTSISAKALEFAVLTAARSGEVRGATWGEIDLEARVWRLSAERMKADRIHRVPLSDAAVALLESLPRGPDTALVFTNSKGGALSDATLGKMLKDLHAASVERGGVGYGDPDQPGRIATPHGTARSSFKDWSRKSTARVMANGNRSSFPDEWSELALAHINSDETRSAYARDELLEERRELMQTWADYCKGAKS 451
BLAST of mRNA_L-digitata_M_contig101350.1.1 vs. uniprot
Match: UPI000685ABA5 (tyrosine-type recombinase/integrase n=1 Tax=Haliea salexigens TaxID=287487 RepID=UPI000685ABA5) HSP 1 Score: 272 bits (695), Expect = 4.250e-87 Identity = 146/263 (55.51%), Postives = 183/263 (69.58%), Query Frame = 1
Query: 1 ASRVRQRMAAVFDWSRAAKIRTRPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAVWRLSADRMKADKPHVVPLSCAAVDLLMSLP----RDNPARLVFPNSKGLELSDMALSKLLKDVHAADLKNHGPGYIDPQLDRIATPHGTARSSFKDWCRQ----------HNRFPDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRYCE 747
A+ VRQR+ V D++ A +RT PNPA + L LLP + +RK AG R+HHA + V +PR ADL A+ A S AL+F ILTAARS EVR ATW EID +A VWRLSADRMKAD+ H VPLS AA+ LL ++ ++NP+ L+F N +G LSDMALSK++KD+HA +K PGY+DP R+ATPHGTARSSFKDW R+ + FPDE SELALAHVNSD+TR+AYAR ELLE+RR +M+ W Y +
Sbjct: 85 ANNVRQRIGKVLDYASACGLRTTPNPADMRGGLRELLPKSGAVRKKAG-GRRHHARIAVDAMPRFWADLTAKRATSAKALQFTILTAARSGEVRGATWEEIDFNARVWRLSADRMKADRVHRVPLSEAAIKLLEAIKAKTGKENPSGLIFTNYRGAALSDMALSKMMKDMHALAIKAGTPGYVDPDQGRVATPHGTARSSFKDWARRSTSRVLADGNRSSFPDEVSELALAHVNSDETRSAYARDELLEDRRELMQTWAHYLQ 346
BLAST of mRNA_L-digitata_M_contig101350.1.1 vs. uniprot
Match: A0A7V1FQV3_9GAMM (DUF4102 domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A7V1FQV3_9GAMM) HSP 1 Score: 272 bits (696), Expect = 3.810e-86 Identity = 146/257 (56.81%), Postives = 181/257 (70.43%), Query Frame = 1
Query: 1 ASRVRQRMAAVFDWSRAAKIRTRPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAVWRLSADRMKADKPHVVPLSCAAVDLLMSLPRDNPARLVFPNSKGLELSDMALSKLLKDVHAADLKNHGPGYIDPQLDRIATPHGTARSSFKDWCRQH----------NRFPDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRY 741
A+RVRQR+A+V D++ A ++RT NPA + L LLP + +RK AGK +HHA +PV + MADL R + S AL FAILTA RS EVR A W+EIDL+ VWRLSA+RMKAD+ H VPLS AA++L+ SLP+ + +L+F NSK LSD AL KL+KD+H A ++ G GYIDP+ RIATPHGTARSSFKDW R + FPDEW ELALAHVNSD+TRAAYAR ELL+ER +M+AW Y
Sbjct: 181 ATRVRQRIASVLDYAAAMELRTGSNPAGLQGNLRELLPKSKAVRKKAGK--RHHARIPVEQMASFMADLRTRSSISAKALEFAILTAGRSGEVRGALWSEIDLERKVWRLSAERMKADRGHTVPLSDAAIELIESLPKGSGRKLLFTNSKQAGLSDAALGKLIKDMHEAAVEAGGKGYIDPEQGRIATPHGTARSSFKDWSRSSTARVMANGNMSSFPDEWGELALAHVNSDETRAAYARSELLDERGELMQAWAEY 435
BLAST of mRNA_L-digitata_M_contig101350.1.1 vs. uniprot
Match: A0A1H1M1R0_9GAMM (Phage integrase family protein n=1 Tax=Halopseudomonas sabulinigri TaxID=472181 RepID=A0A1H1M1R0_9GAMM) HSP 1 Score: 264 bits (675), Expect = 5.460e-83 Identity = 145/257 (56.42%), Postives = 176/257 (68.48%), Query Frame = 1
Query: 1 ASRVRQRMAAVFDWSRAAKIRTRPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAVWRLSADRMKADKPHVVPLSCAAVDLLMSLPRDNPARLVFPNSKGLELSDMALSKLLKDVHAADLKNHGPGYIDPQLDRIATPHGTARSSFKDWCRQH----------NRFPDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRY 741
ASRVRQR+A+V D++ A ++RT PNPA + L LLP + +RK AGK +HHA +PV + M DL + + S AL FAILTA RS EVR ATW EIDL+ VWRLS +RMKADK H VPLS AA+ LL +LP+ LVF NSK LSD A+ KL+KD+H ++ G GY+DP RIATPHGTARSSFKDW + + FPDE SELALAHVNSD+TRAAYARG LLEER+ +M+AW Y
Sbjct: 181 ASRVRQRIASVLDYATAMELRTGPNPADLQGKLRELLPRSKAVRKKAGK--RHHARVPVEQMSSFMTDLRTKKSISAKALEFAILTAGRSGEVRGATWEEIDLERRVWRLSPERMKADKGHTVPLSDAAMSLLEALPKYRGQSLVFTNSKNAALSDAAMGKLIKDMHTTAVEAGGKGYLDPDQGRIATPHGTARSSFKDWSLKSTARVMANGNTSSFPDELSELALAHVNSDETRAAYARGGLLEERQELMQAWANY 435 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101350.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig101350.1.1 >prot_L-digitata_M_contig101350.1.1 ID=prot_L-digitata_M_contig101350.1.1|Name=mRNA_L-digitata_M_contig101350.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=250bp MAAVFDWSRAAKIRTRPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALback to top mRNA from alignment at L-digitata_M_contig101350:157..927- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig101350.1.1 ID=mRNA_L-digitata_M_contig101350.1.1|Name=mRNA_L-digitata_M_contig101350.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=771bp|location=Sequence derived from alignment at L-digitata_M_contig101350:157..927- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig101350:157..927- >mRNA_L-digitata_M_contig101350.1.1 ID=mRNA_L-digitata_M_contig101350.1.1|Name=mRNA_L-digitata_M_contig101350.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=750bp|location=Sequence derived from alignment at L-digitata_M_contig101350:157..927- (Laminaria digitata LdigPH10_18mv male)back to top |