mRNA_L-digitata_M_contig101350.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101350.1.1
Unique NamemRNA_L-digitata_M_contig101350.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101350.1.1 vs. uniprot
Match: A0A3C1KJT9_9GAMM (Integrase n=4 Tax=Halieaceae TaxID=1706372 RepID=A0A3C1KJT9_9GAMM)

HSP 1 Score: 521 bits (1343), Expect = 1.420e-184
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 1
Query:    1 ASRVRQRMAAVFDWSRAAKIRTRPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAVWRLSADRMKADKPHVVPLSCAAVDLLMSLPRDNPARLVFPNSKGLELSDMALSKLLKDVHAADLKNHGPGYIDPQLDRIATPHGTARSSFKDWCRQHNRFPDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRYCEPARSPST 768
            ASRVRQRMAAVFDWSRAAKIRTRPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAVWRLSADRMKADKPHVVPLSCAAVDLLMSLPRDNPARLVFPNSKGLELSDMALSKLLKDVHAADLKNHGPGYIDPQLDRIATPHGTARSSFKDWCRQHNRFPDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRYCEPARSPST
Sbjct:  170 ASRVRQRMAAVFDWSRAAKIRTRPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAVWRLSADRMKADKPHVVPLSCAAVDLLMSLPRDNPARLVFPNSKGLELSDMALSKLLKDVHAADLKNHGPGYIDPQLDRIATPHGTARSSFKDWCRQHNRFPDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRYCEPARSPST 425          
BLAST of mRNA_L-digitata_M_contig101350.1.1 vs. uniprot
Match: A0A6C0U6N8_9GAMM (Integrase arm-type DNA-binding domain-containing protein n=2 Tax=Kineobactrum salinum TaxID=2708301 RepID=A0A6C0U6N8_9GAMM)

HSP 1 Score: 447 bits (1149), Expect = 6.600e-155
Identity = 220/253 (86.96%), Postives = 233/253 (92.09%), Query Frame = 1
Query:    1 ASRVRQRMAAVFDWSRAAKIRTRPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAVWRLSADRMKADKPHVVPLSCAAVDLLMSLPRDNPARLVFPNSKGLELSDMALSKLLKDVHAADLKNHGPGYIDPQLDRIATPHGTARSSFKDWCRQHNRFPDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRYCEPARS 759
            ASRVRQRMAAVFDW+RAAKIRT PNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPV+DVPRLM+D+  RDAPS  ALRFA+L AARS EVRLATW+EIDLDA VWRLSADRMKADK H VPLS AAV+LL +LPRDNPA LVFPNSKG+ELSDMALSKL+KD HAADLK  GPGYIDP LDRIATPHGTARSSFKDWCRQ+NRFPDEWSELALAHVNSD TR AYAR ELLEERRGMMEAWG+YCEP+RS
Sbjct:  173 ASRVRQRMAAVFDWARAAKIRTAPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVADVPRLMSDIGTRDAPSAQALRFAVLAAARSGEVRLATWDEIDLDAGVWRLSADRMKADKAHTVPLSRAAVELLKALPRDNPAGLVFPNSKGVELSDMALSKLMKDAHAADLKKGGPGYIDPILDRIATPHGTARSSFKDWCRQNNRFPDEWSELALAHVNSDATRTAYARNELLEERRGMMEAWGQYCEPSRS 425          
BLAST of mRNA_L-digitata_M_contig101350.1.1 vs. uniprot
Match: A0A2D8IUM3_9GAMM (Integrase n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2D8IUM3_9GAMM)

HSP 1 Score: 399 bits (1024), Expect = 5.710e-136
Identity = 194/250 (77.60%), Postives = 217/250 (86.80%), Query Frame = 1
Query:    1 ASRVRQRMAAVFDWSRAAKIRTRPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAVWRLSADRMKADKPHVVPLSCAAVDLLMSLPRDNPARLVFPNSKGLELSDMALSKLLKDVHAADLKNHGPGYIDPQLDRIATPHGTARSSFKDWCRQHNRFPDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRYCEP 750
            ASRVRQRMAAVFDW+RAAKIRT PNPAAW+ CLEPLLP T +LRKTAGKA++HH ALPVS+VPR MAD+  RD PS +ALRFAILT ARS E RLATW+EIDLDA VWRL ADRMK  + H VPLS AA+++L ++P+DNPA LVFPNSKG+ELS+ ALSKL+KD HAADLK  G GY+DP+ +RIATPHGTARSSFK+W RQ  RFPDEWSELALAHVNSDQTRAAYAR ELLEERRGMMEAWG YCEP
Sbjct:  170 ASRVRQRMAAVFDWARAAKIRTAPNPAAWQGCLEPLLPKTDRLRKTAGKAKRHHPALPVSEVPRFMADMATRDTPSAYALRFAILTGARSGEARLATWDEIDLDARVWRLPADRMKEGQQHTVPLSDAAIEILEAMPKDNPAGLVFPNSKGVELSNTALSKLMKDAHAADLKQGGIGYLDPRQNRIATPHGTARSSFKEWSRQGGRFPDEWSELALAHVNSDQTRAAYARSELLEERRGMMEAWGSYCEP 419          
BLAST of mRNA_L-digitata_M_contig101350.1.1 vs. uniprot
Match: A0A0F2NTS6_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium BRH_c0 TaxID=1629722 RepID=A0A0F2NTS6_9GAMM)

HSP 1 Score: 384 bits (986), Expect = 4.760e-130
Identity = 190/255 (74.51%), Postives = 213/255 (83.53%), Query Frame = 1
Query:    1 ASRVRQRMAAVFDWSRAAKIRTRPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAVWRLSADRMKADKPHVVPLSCAAVDLLMSLPRDNPARLVFPNSKGLELSDMALSKLLKDVHAADLKNHGPGYIDPQLDRIATPHGTARSSFKDWCRQHNRFPDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRYCEPARSPS 765
            ASR+RQRMAAVFDW+ AAK+RT  NPAAWK CL+  LP T K++K  G  RKHH ALPV+++PRLMADL  RD  S  ALRF ILTAARS EVRLATW+EID++A VWRLSADRMKADKPH VPLS AAV +L SLPRDNPA LVFP+ +G+E+SDM LSKLLKDVHAAD+K    GY+DP   RIATPHGTARS+FKDW RQ+ RFPDEWSELALAHVNSDQTRAAYARGELLEERR +MEAWGRYCEP  + S
Sbjct:  180 ASRLRQRMAAVFDWALAAKVRTAANPAAWKGCLDAQLPKTEKVKKRMGNGRKHHPALPVAELPRLMADLATRDNTSAKALRFTILTAARSGEVRLATWHEIDMNARVWRLSADRMKADKPHAVPLSDAAVAILESLPRDNPAGLVFPSVRGIEMSDMTLSKLLKDVHAADVKRGEAGYLDPVQGRIATPHGTARSTFKDWSRQNGRFPDEWSELALAHVNSDQTRAAYARGELLEERRSLMEAWGRYCEPPDAQS 434          
BLAST of mRNA_L-digitata_M_contig101350.1.1 vs. uniprot
Match: A0A4R7JVI7_9GAMM (Integrase n=1 Tax=Halospina denitrificans TaxID=332522 RepID=A0A4R7JVI7_9GAMM)

HSP 1 Score: 293 bits (751), Expect = 2.910e-94
Identity = 151/252 (59.92%), Postives = 190/252 (75.40%), Query Frame = 1
Query:    1 ASRVRQRMAAVFDWSRAAK--IRTRP-NPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAVWRLSADRMKADKPHVVPLSCAAVDLLMSLPRDNPARLVFPNSKGLELSDMALSKLLKDVHAADLKNHGPGYIDPQLD-RIATPHGTARSSFKDWCRQHNRFPDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRYC 744
            A R+RQRM AVF+++      IRT P NPA W++ L+  LPA   ++K +GKA +HH ALP  D+PRLMADL ++ A    AL+FAILT ARS EVR ATW+EIDL    W LSA+RMKAD+PH VPLS AAV+LL ++P+  P  L+F +++G  +SD  LSKL+KD+HAADLK  G GY DP+ D RIATPHGTARSSFK+W R+  R+PDE+SE+ALAHVN+D+TR+AYAR ELL ERR MM+ W RYC
Sbjct:  197 ADRIRQRMGAVFEYALTGDKPIRTNPVNPARWEN-LKGKLPAFQAVKKKSGKANRHHPALPYKDMPRLMADLRSKHANGAKALQFAILTGARSEEVRKATWDEIDLTEKTWHLSAERMKADRPHTVPLSDAAVELLRTMPKKTPGNLIFGSAQGKVMSDNTLSKLIKDMHAADLKRGGDGYTDPKQDNRIATPHGTARSSFKEWARKATRYPDEYSEIALAHVNTDETRSAYARDELLAERRPMMQEWARYC 447          
BLAST of mRNA_L-digitata_M_contig101350.1.1 vs. uniprot
Match: A0A396S7N8_9PSED (Integrase n=1 Tax=Pseudomonas jilinensis TaxID=2078689 RepID=A0A396S7N8_9PSED)

HSP 1 Score: 284 bits (727), Expect = 1.100e-90
Identity = 153/257 (59.53%), Postives = 181/257 (70.43%), Query Frame = 1
Query:    1 ASRVRQRMAAVFDWSRAAKIRTRPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAVWRLSADRMKADKPHVVPLSCAAVDLLMSLPRDNPARLVFPNSKGLELSDMALSKLLKDVHAADLKNHGPGYIDPQLDRIATPHGTARSSFKDWCRQ----------HNRFPDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRY 741
            A+RVRQR+  V D++ AA++R+ PNPA  K  L  LLP +A +RK AG  +KHH  +PV  +   MADL  R + S  AL FA+LTAARS EVR ATW E DL A VW LSA+RMKAD+PH VPLS AAV LL  LPR + A LVFP  KG ELSD  L K+++D+H A  K  G GY+DP   RIATPHGTARSSFKDW R+           + FPDEW+ELALAHVN+DQTRAAYAR ELLEERR +M+AWG Y
Sbjct:  188 ATRVRQRIGTVIDYATAAELRSGPNPADMKGNLRELLPKSAAVRKKAG-GKKHHPRVPVDGMTAFMADLRTRTSISAVALEFAVLTAARSGEVRGATWGEFDLKARVWSLSAERMKADRPHKVPLSDAAVALLERLPRGSAADLVFPGFKGRELSDATLGKMIRDMHEAQTKAGGAGYLDPDQGRIATPHGTARSSFKDWSRRSTSRVMADGNRSSFPDEWAELALAHVNNDQTRAAYARDELLEERRELMQAWGEY 443          
BLAST of mRNA_L-digitata_M_contig101350.1.1 vs. uniprot
Match: UPI00123C18DB (integrase arm-type DNA-binding domain-containing protein n=1 Tax=Pseudomonas profundi TaxID=1981513 RepID=UPI00123C18DB)

HSP 1 Score: 279 bits (714), Expect = 1.020e-88
Identity = 155/264 (58.71%), Postives = 187/264 (70.83%), Query Frame = 1
Query:    1 ASRVRQRMAAVFDWSRAAKIRTRPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAVWRLSADRMKADKPHVVPLSCAAVDLLMSLPRDNPARLVFPNSKGLELSDMALSKLLKDVHAADLKNHGPGYIDP-QLDRIATPHGTARSSFKDWCRQ----------HNRFPDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRYCEPARS 759
            A+RVRQR+ +V D++ A ++R  PNPA  K  L   LP +  +RK +G  +KHHA +PV  +PR +ADL  R + S  AL FA+LTAARS EVR ATW EIDL+A VWRLSA+RMKAD+ H VPLS AAV LL SLPR     LVF NSKG  LSD  L K+LKD+HAA ++  G GY DP Q  RIATPHGTARSSFKDW R+           + FPDEWSELALAH+NSD+TR+AYAR ELLEERR +M+ W  YC+ A+S
Sbjct:  189 ATRVRQRIGSVLDFAIAKELRPGPNPADIKGPLGEQLPKSKGVRKKSG-GKKHHARVPVEAMPRFLADLRTRTSISAKALEFAVLTAARSGEVRGATWGEIDLEARVWRLSAERMKADRIHRVPLSDAAVALLESLPRGPDTALVFTNSKGGALSDATLGKMLKDLHAASVERGGVGYGDPDQPGRIATPHGTARSSFKDWSRKSTARVMANGNRSSFPDEWSELALAHINSDETRSAYARDELLEERRELMQTWADYCKGAKS 451          
BLAST of mRNA_L-digitata_M_contig101350.1.1 vs. uniprot
Match: UPI000685ABA5 (tyrosine-type recombinase/integrase n=1 Tax=Haliea salexigens TaxID=287487 RepID=UPI000685ABA5)

HSP 1 Score: 272 bits (695), Expect = 4.250e-87
Identity = 146/263 (55.51%), Postives = 183/263 (69.58%), Query Frame = 1
Query:    1 ASRVRQRMAAVFDWSRAAKIRTRPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAVWRLSADRMKADKPHVVPLSCAAVDLLMSLP----RDNPARLVFPNSKGLELSDMALSKLLKDVHAADLKNHGPGYIDPQLDRIATPHGTARSSFKDWCRQ----------HNRFPDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRYCE 747
            A+ VRQR+  V D++ A  +RT PNPA  +  L  LLP +  +RK AG  R+HHA + V  +PR  ADL A+ A S  AL+F ILTAARS EVR ATW EID +A VWRLSADRMKAD+ H VPLS AA+ LL ++     ++NP+ L+F N +G  LSDMALSK++KD+HA  +K   PGY+DP   R+ATPHGTARSSFKDW R+           + FPDE SELALAHVNSD+TR+AYAR ELLE+RR +M+ W  Y +
Sbjct:   85 ANNVRQRIGKVLDYASACGLRTTPNPADMRGGLRELLPKSGAVRKKAG-GRRHHARIAVDAMPRFWADLTAKRATSAKALQFTILTAARSGEVRGATWEEIDFNARVWRLSADRMKADRVHRVPLSEAAIKLLEAIKAKTGKENPSGLIFTNYRGAALSDMALSKMMKDMHALAIKAGTPGYVDPDQGRVATPHGTARSSFKDWARRSTSRVLADGNRSSFPDEVSELALAHVNSDETRSAYARDELLEDRRELMQTWAHYLQ 346          
BLAST of mRNA_L-digitata_M_contig101350.1.1 vs. uniprot
Match: A0A7V1FQV3_9GAMM (DUF4102 domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A7V1FQV3_9GAMM)

HSP 1 Score: 272 bits (696), Expect = 3.810e-86
Identity = 146/257 (56.81%), Postives = 181/257 (70.43%), Query Frame = 1
Query:    1 ASRVRQRMAAVFDWSRAAKIRTRPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAVWRLSADRMKADKPHVVPLSCAAVDLLMSLPRDNPARLVFPNSKGLELSDMALSKLLKDVHAADLKNHGPGYIDPQLDRIATPHGTARSSFKDWCRQH----------NRFPDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRY 741
            A+RVRQR+A+V D++ A ++RT  NPA  +  L  LLP +  +RK AGK  +HHA +PV  +   MADL  R + S  AL FAILTA RS EVR A W+EIDL+  VWRLSA+RMKAD+ H VPLS AA++L+ SLP+ +  +L+F NSK   LSD AL KL+KD+H A ++  G GYIDP+  RIATPHGTARSSFKDW R            + FPDEW ELALAHVNSD+TRAAYAR ELL+ER  +M+AW  Y
Sbjct:  181 ATRVRQRIASVLDYAAAMELRTGSNPAGLQGNLRELLPKSKAVRKKAGK--RHHARIPVEQMASFMADLRTRSSISAKALEFAILTAGRSGEVRGALWSEIDLERKVWRLSAERMKADRGHTVPLSDAAIELIESLPKGSGRKLLFTNSKQAGLSDAALGKLIKDMHEAAVEAGGKGYIDPEQGRIATPHGTARSSFKDWSRSSTARVMANGNMSSFPDEWGELALAHVNSDETRAAYARSELLDERGELMQAWAEY 435          
BLAST of mRNA_L-digitata_M_contig101350.1.1 vs. uniprot
Match: A0A1H1M1R0_9GAMM (Phage integrase family protein n=1 Tax=Halopseudomonas sabulinigri TaxID=472181 RepID=A0A1H1M1R0_9GAMM)

HSP 1 Score: 264 bits (675), Expect = 5.460e-83
Identity = 145/257 (56.42%), Postives = 176/257 (68.48%), Query Frame = 1
Query:    1 ASRVRQRMAAVFDWSRAAKIRTRPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAALPVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAVWRLSADRMKADKPHVVPLSCAAVDLLMSLPRDNPARLVFPNSKGLELSDMALSKLLKDVHAADLKNHGPGYIDPQLDRIATPHGTARSSFKDWCRQH----------NRFPDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRY 741
            ASRVRQR+A+V D++ A ++RT PNPA  +  L  LLP +  +RK AGK  +HHA +PV  +   M DL  + + S  AL FAILTA RS EVR ATW EIDL+  VWRLS +RMKADK H VPLS AA+ LL +LP+     LVF NSK   LSD A+ KL+KD+H   ++  G GY+DP   RIATPHGTARSSFKDW  +           + FPDE SELALAHVNSD+TRAAYARG LLEER+ +M+AW  Y
Sbjct:  181 ASRVRQRIASVLDYATAMELRTGPNPADLQGKLRELLPRSKAVRKKAGK--RHHARVPVEQMSSFMTDLRTKKSISAKALEFAILTAGRSGEVRGATWEEIDLERRVWRLSPERMKADKGHTVPLSDAAMSLLEALPKYRGQSLVFTNSKNAALSDAAMGKLIKDMHTTAVEAGGKGYLDPDQGRIATPHGTARSSFKDWSLKSTARVMANGNTSSFPDELSELALAHVNSDETRAAYARGGLLEERQELMQAWANY 435          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101350.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C1KJT9_9GAMM1.420e-184100.00Integrase n=4 Tax=Halieaceae TaxID=1706372 RepID=A... [more]
A0A6C0U6N8_9GAMM6.600e-15586.96Integrase arm-type DNA-binding domain-containing p... [more]
A0A2D8IUM3_9GAMM5.710e-13677.60Integrase n=1 Tax=Haliea sp. TaxID=1932666 RepID=A... [more]
A0A0F2NTS6_9GAMM4.760e-13074.51Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A4R7JVI7_9GAMM2.910e-9459.92Integrase n=1 Tax=Halospina denitrificans TaxID=33... [more]
A0A396S7N8_9PSED1.100e-9059.53Integrase n=1 Tax=Pseudomonas jilinensis TaxID=207... [more]
UPI00123C18DB1.020e-8858.71integrase arm-type DNA-binding domain-containing p... [more]
UPI000685ABA54.250e-8755.51tyrosine-type recombinase/integrase n=1 Tax=Haliea... [more]
A0A7V1FQV3_9GAMM3.810e-8656.81DUF4102 domain-containing protein n=2 Tax=root Tax... [more]
A0A1H1M1R0_9GAMM5.460e-8356.42Phage integrase family protein n=1 Tax=Halopseudom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101350contigL-digitata_M_contig101350:157..927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1121937.AUHJ01000001_gene388
PFAMsArm-DNA-bind_3,Phage_integrase
Model size771
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.46e-86
EggNOG OGsCOG0582@1|root,COG0582@2|Bacteria,1MU23@1224|Proteobacteria,1RMJ1@1236|Gammaproteobacteria,465VD@72275|Alteromonadaceae
DescriptionArm DNA-binding domain
Cds size750
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406617.9797957-CDS-L-digitata_M_contig101350:156..9061682406617.9797957-CDS-L-digitata_M_contig101350:156..906Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101350 157..906 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406617.9905941-UTR-L-digitata_M_contig101350:906..9271682406617.9905941-UTR-L-digitata_M_contig101350:906..927Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig101350 907..927 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101350.1.1prot_L-digitata_M_contig101350.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101350 157..906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101350.1.1

>prot_L-digitata_M_contig101350.1.1 ID=prot_L-digitata_M_contig101350.1.1|Name=mRNA_L-digitata_M_contig101350.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=250bp
MAAVFDWSRAAKIRTRPNPAAWKDCLEPLLPATAKLRKTAGKARKHHAAL
PVSDVPRLMADLCARDAPSPHALRFAILTAARSREVRLATWNEIDLDAAV
WRLSADRMKADKPHVVPLSCAAVDLLMSLPRDNPARLVFPNSKGLELSDM
ALSKLLKDVHAADLKNHGPGYIDPQLDRIATPHGTARSSFKDWCRQHNRF
PDEWSELALAHVNSDQTRAAYARGELLEERRGMMEAWGRYCEPARSPST*
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mRNA from alignment at L-digitata_M_contig101350:157..927-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101350.1.1 ID=mRNA_L-digitata_M_contig101350.1.1|Name=mRNA_L-digitata_M_contig101350.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=771bp|location=Sequence derived from alignment at L-digitata_M_contig101350:157..927- (Laminaria digitata LdigPH10_18mv male)
GCCAGTCGTGTGCGCCAACGCATGGCTGCGGTGTTTGACTGGTCAAGAGC CGCAAAGATACGCACAAGACCCAATCCGGCAGCGTGGAAAGATTGCCTGG AGCCACTGCTTCCCGCTACTGCCAAGTTGCGCAAAACCGCAGGGAAGGCC CGCAAGCACCACGCCGCACTCCCCGTGTCCGATGTGCCTCGCCTGATGGC CGATCTTTGCGCCCGGGACGCCCCCAGCCCCCACGCGTTACGATTTGCCA TTCTGACTGCTGCGCGTTCCAGGGAGGTCAGGCTGGCAACGTGGAATGAA ATCGACCTGGACGCCGCTGTGTGGCGCCTCAGTGCGGACCGCATGAAGGC CGACAAGCCGCATGTGGTTCCGCTGTCTTGCGCCGCTGTGGACTTGCTGA TGTCGCTCCCGCGGGACAATCCTGCCCGATTGGTATTTCCAAACAGCAAA GGCTTGGAGCTGTCGGATATGGCGCTATCCAAGTTGCTGAAGGACGTCCA TGCAGCAGATCTTAAGAACCACGGCCCCGGGTACATTGACCCACAACTCG ACCGGATCGCAACGCCCCACGGTACCGCACGTTCCAGTTTCAAAGACTGG TGCCGCCAGCACAACCGATTTCCCGATGAGTGGTCGGAGCTGGCGCTGGC TCACGTCAATAGTGACCAGACTAGGGCTGCGTACGCCCGTGGAGAGCTTT TAGAGGAACGGCGGGGCATGATGGAGGCGTGGGGACGGTATTGCGAGCCT GCGCGTTCGCCTTCCACGTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig101350:157..927-

>mRNA_L-digitata_M_contig101350.1.1 ID=mRNA_L-digitata_M_contig101350.1.1|Name=mRNA_L-digitata_M_contig101350.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=750bp|location=Sequence derived from alignment at L-digitata_M_contig101350:157..927- (Laminaria digitata LdigPH10_18mv male)
ATGGCTGCGGTGTTTGACTGGTCAAGAGCCGCAAAGATACGCACAAGACC
CAATCCGGCAGCGTGGAAAGATTGCCTGGAGCCACTGCTTCCCGCTACTG
CCAAGTTGCGCAAAACCGCAGGGAAGGCCCGCAAGCACCACGCCGCACTC
CCCGTGTCCGATGTGCCTCGCCTGATGGCCGATCTTTGCGCCCGGGACGC
CCCCAGCCCCCACGCGTTACGATTTGCCATTCTGACTGCTGCGCGTTCCA
GGGAGGTCAGGCTGGCAACGTGGAATGAAATCGACCTGGACGCCGCTGTG
TGGCGCCTCAGTGCGGACCGCATGAAGGCCGACAAGCCGCATGTGGTTCC
GCTGTCTTGCGCCGCTGTGGACTTGCTGATGTCGCTCCCGCGGGACAATC
CTGCCCGATTGGTATTTCCAAACAGCAAAGGCTTGGAGCTGTCGGATATG
GCGCTATCCAAGTTGCTGAAGGACGTCCATGCAGCAGATCTTAAGAACCA
CGGCCCCGGGTACATTGACCCACAACTCGACCGGATCGCAACGCCCCACG
GTACCGCACGTTCCAGTTTCAAAGACTGGTGCCGCCAGCACAACCGATTT
CCCGATGAGTGGTCGGAGCTGGCGCTGGCTCACGTCAATAGTGACCAGAC
TAGGGCTGCGTACGCCCGTGGAGAGCTTTTAGAGGAACGGCGGGGCATGA
TGGAGGCGTGGGGACGGTATTGCGAGCCTGCGCGTTCGCCTTCCACGTGA
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