mRNA_L-digitata_M_contig10135.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10135.1.1
Unique NamemRNA_L-digitata_M_contig10135.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig10135.1.1 vs. uniprot
Match: A0A835ZDY1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDY1_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 9.850e-5
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:    1 TCSKAAAGGHLALLQWLKAHGCPWDENT 84
            TCS AA GGHL  LQW +A+GCPWDE+T
Sbjct:    2 TCSNAAVGGHLLFLQWARANGCPWDEDT 29
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10135.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZDY1_9STRA9.850e-571.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10135contigL-digitata_M_contig10135:3881..4855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size975
Hectar predicted targeting categorysignal peptide
Exons1
Cds size975
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406617.9534564-CDS-L-digitata_M_contig10135:3880..48551682406617.9534564-CDS-L-digitata_M_contig10135:3880..4855Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10135 3881..4855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10135.1.1prot_L-digitata_M_contig10135.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10135 3881..4855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10135.1.1

>prot_L-digitata_M_contig10135.1.1 ID=prot_L-digitata_M_contig10135.1.1|Name=mRNA_L-digitata_M_contig10135.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=325bp
TCSKAAAGGHLALLQWLKAHGCPWDENTCGEAARGGHLGVLQWARLNGCS
WDDVVCRNAAGEGHLELLQWAHQNGCSWDEKTCSVAALGGHLNILQWARS
YDCPWNELTCSAAAQGGHLHVLQWARENGCPWDENTCHSSAFGGYMDVLQ
WAQSYGCPWDELTCGMASRGGHLDVLQWARAHGCPWNHSTCHCAARGGHM
DILQWAHENGCPWDKFVCNSAATGGHLELLQWARSNGCPWDKDTCECAAV
QGHLELVQWAHQNGCPWDETMCTMAALGGNLNVLQWAHENGCPWDESTCS
MAASGGNLDVLQWARAAGCPWNKST
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mRNA from alignment at L-digitata_M_contig10135:3881..4855-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10135.1.1 ID=mRNA_L-digitata_M_contig10135.1.1|Name=mRNA_L-digitata_M_contig10135.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=975bp|location=Sequence derived from alignment at L-digitata_M_contig10135:3881..4855- (Laminaria digitata LdigPH10_18mv male)
ACTTGCTCTAAGGCTGCGGCCGGAGGGCATCTGGCCTTGCTACAGTGGTT
GAAGGCACACGGCTGCCCATGGGACGAGAATACCTGCGGCGAGGCTGCTC
GCGGGGGACACCTTGGCGTTCTTCAGTGGGCACGTCTGAACGGCTGTTCC
TGGGATGATGTAGTATGCAGAAATGCCGCTGGCGAAGGGCACCTCGAGCT
TCTCCAGTGGGCTCACCAGAACGGCTGCTCCTGGGACGAAAAGACGTGCA
GTGTGGCTGCTTTGGGAGGTCATCTGAACATTCTTCAGTGGGCACGATCA
TACGACTGTCCCTGGAACGAACTGACGTGCAGTGCGGCTGCTCAGGGAGG
GCACCTGCACGTTCTGCAATGGGCACGTGAGAATGGCTGTCCGTGGGACG
AGAACACATGCCATTCGTCTGCTTTCGGGGGGTATATGGACGTTCTTCAG
TGGGCACAATCGTACGGTTGCCCCTGGGACGAACTGACGTGCGGTATGGC
TTCTCGGGGAGGGCATCTGGACGTTCTTCAGTGGGCACGTGCCCATGGCT
GTCCCTGGAACCATTCGACATGCCACTGCGCTGCTCGTGGAGGGCATATG
GACATTCTTCAGTGGGCACACGAGAACGGCTGCCCCTGGGACAAGTTTGT
ATGCAACAGTGCCGCTACCGGCGGGCACCTCGAGCTCCTTCAATGGGCAC
GATCAAACGGCTGTCCCTGGGACAAGGACACATGCGAGTGTGCTGCTGTC
CAAGGGCACCTCGAGCTCGTCCAGTGGGCTCACCAGAACGGTTGCCCCTG
GGACGAAACGATGTGTACTATGGCGGCTTTGGGAGGCAATCTGAACGTTC
TTCAGTGGGCACACGAGAACGGTTGCCCCTGGGACGAAAGTACGTGCAGT
ATGGCCGCGTCGGGAGGGAATCTTGACGTTCTCCAGTGGGCGCGGGCGGC
CGGCTGTCCCTGGAACAAATCGACG
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Coding sequence (CDS) from alignment at L-digitata_M_contig10135:3881..4855-

>mRNA_L-digitata_M_contig10135.1.1 ID=mRNA_L-digitata_M_contig10135.1.1|Name=mRNA_L-digitata_M_contig10135.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=975bp|location=Sequence derived from alignment at L-digitata_M_contig10135:3881..4855- (Laminaria digitata LdigPH10_18mv male)
ACTTGCTCTAAGGCTGCGGCCGGAGGGCATCTGGCCTTGCTACAGTGGTT
GAAGGCACACGGCTGCCCATGGGACGAGAATACCTGCGGCGAGGCTGCTC
GCGGGGGACACCTTGGCGTTCTTCAGTGGGCACGTCTGAACGGCTGTTCC
TGGGATGATGTAGTATGCAGAAATGCCGCTGGCGAAGGGCACCTCGAGCT
TCTCCAGTGGGCTCACCAGAACGGCTGCTCCTGGGACGAAAAGACGTGCA
GTGTGGCTGCTTTGGGAGGTCATCTGAACATTCTTCAGTGGGCACGATCA
TACGACTGTCCCTGGAACGAACTGACGTGCAGTGCGGCTGCTCAGGGAGG
GCACCTGCACGTTCTGCAATGGGCACGTGAGAATGGCTGTCCGTGGGACG
AGAACACATGCCATTCGTCTGCTTTCGGGGGGTATATGGACGTTCTTCAG
TGGGCACAATCGTACGGTTGCCCCTGGGACGAACTGACGTGCGGTATGGC
TTCTCGGGGAGGGCATCTGGACGTTCTTCAGTGGGCACGTGCCCATGGCT
GTCCCTGGAACCATTCGACATGCCACTGCGCTGCTCGTGGAGGGCATATG
GACATTCTTCAGTGGGCACACGAGAACGGCTGCCCCTGGGACAAGTTTGT
ATGCAACAGTGCCGCTACCGGCGGGCACCTCGAGCTCCTTCAATGGGCAC
GATCAAACGGCTGTCCCTGGGACAAGGACACATGCGAGTGTGCTGCTGTC
CAAGGGCACCTCGAGCTCGTCCAGTGGGCTCACCAGAACGGTTGCCCCTG
GGACGAAACGATGTGTACTATGGCGGCTTTGGGAGGCAATCTGAACGTTC
TTCAGTGGGCACACGAGAACGGTTGCCCCTGGGACGAAAGTACGTGCAGT
ATGGCCGCGTCGGGAGGGAATCTTGACGTTCTCCAGTGGGCGCGGGCGGC
CGGCTGTCCCTGGAACAAATCGACG
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