mRNA_L-digitata_M_contig101349.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101349.1.1
Unique NamemRNA_L-digitata_M_contig101349.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101349.1.1 vs. uniprot
Match: A0A538K529_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538K529_9ACTN)

HSP 1 Score: 102 bits (255), Expect = 7.340e-23
Identity = 70/171 (40.94%), Postives = 97/171 (56.73%), Query Frame = 3
Query:  186 DAELDRLYGLALDEFVPERDALAQRLADAGASEHSAEVEALAKPSVVAWAINQIARQRRDLVTDLIAAVDRVRAAQVNQPDEHSDAAS-LPQALRDEKAALARIEEIAPTILSEAGYVSSHATIDRALRCIRAAAADERGRKQLDSGRLASDFVPPDSGDLTLREAPGPAP 695
            D E+DRL+ L L++F   R+ LA+RL   G +  + EV+ L KPSV AW INQ++RQR+D V  L+AA  ++R AQ        DA + L QA  DE+ A+  +   A  +L  AG   S + +DR    +RAAA  + GR  L++GRL+ D  P     L   E  GPAP
Sbjct:    5 DQEVDRLFELPLEDFTAARNELARRLKGEGDAPAAEEVKRLPKPSVAAWTINQLSRQRKDAVGALVAAAAKLRKAQERALQSEGDAGNALRQAQEDERRAIRGLTHQAQQLLEAAGRPVSSSVLDRISSTLRAAAVSDEGRAALEAGRLSGDVKPSGFDALAGLEL-GPAP 174          
BLAST of mRNA_L-digitata_M_contig101349.1.1 vs. uniprot
Match: A0A538DNU8_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538DNU8_9ACTN)

HSP 1 Score: 100 bits (250), Expect = 4.010e-22
Identity = 76/181 (41.99%), Postives = 101/181 (55.80%), Query Frame = 3
Query:  186 DAELDRLYGLALDEFVPERDALAQRLADAGASEHSAEVEALAKPSVVAWAINQIARQRRDLVTDLIAAVDRVRAAQVNQPDEHSDAAS-LPQALRDEKAALARIEEIAPTILSEAGYVSSHATIDRALRCIRAAAADERGRKQLDSGRLASDFVPPDS---GDLTLREAPG--PAPRGRDE 710
            D E+DRL+ L L+EF   R+ LA RL   G +  + EV+ L KPSV AW INQ++RQR D V  L+AA  ++R  Q        DA + L QA  DE+ A+  + + A  IL +AG   S   +DR    +RAAA  + GR  L++GRL+ D  P      G L L +AP   PAP  RDE
Sbjct:    5 DQEVDRLFELPLEEFTAARNDLAGRLKSEGDAAAAEEVKRLTKPSVAAWTINQLSRQRTDAVGALLAAGAKLRETQERALQSKGDAGNALRQAQEDERQAIRALTQEAQHILEDAGRPVSSTLLDRVSSTLRAAAVSDGGRAALEAGRLSGDVKPSGFDALGGLELAKAPRGRPAPA-RDE 184          
BLAST of mRNA_L-digitata_M_contig101349.1.1 vs. uniprot
Match: A0A537WXF2_9ACTN (Uncharacterized protein n=2 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537WXF2_9ACTN)

HSP 1 Score: 96.3 bits (238), Expect = 1.850e-20
Identity = 68/180 (37.78%), Postives = 98/180 (54.44%), Query Frame = 3
Query:  186 DAELDRLYGLALDEFVPERDALAQRLADAGASEHSAEVEALAKPSVVAWAINQIARQRRDLVTDLIAAVDRVRAAQVN-QPDEHSDAASLPQALRDEKAALARIEEIAPTILSEAGYVSSHATIDRALRCIRAAAADERGRKQLDSGRLASDFVPPDSGDLTLREAPGPAPRGRDEGRRA 722
            ++ELDRLYGL LDEF   R+ L  RL  AG  + +  V A  KPSV  WA+NQ+AR+  D V +L+ A +++R AQ      E +DA    +A   E+ +L ++  +A  +L+E    +SHAT++R  R +R+AA D      L +GRL  +    +S       A  P PR     RRA
Sbjct:   12 ESELDRLYGLPLDEFTAARNELVTRLRKAGQGDAAESVRAFRKPSVAVWAVNQLARRHADDVHELVTAGEQLRNAQATAMRGEGADAVR--EATAAERESLGKLTRLAERLLAEESRPASHATLERIARTLRSAAVDAAAAALLAAGRLPDEV---ESSGFAALAAIAPPPRKPGRPRRA 186          
BLAST of mRNA_L-digitata_M_contig101349.1.1 vs. uniprot
Match: A0A538A579_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538A579_9ACTN)

HSP 1 Score: 92.4 bits (228), Expect = 7.360e-19
Identity = 61/148 (41.22%), Postives = 88/148 (59.46%), Query Frame = 3
Query:  186 DAELDRLYGLALDEFVPERDALAQRLADAGASEHSAEVEALAKPSVVAWAINQIARQRRDLVTDLIAAVDRVRAAQVNQPDEHSDAASLPQALRDEKAALARIEEIAPTILSEAGYVSSHATIDRALRCIRAAAADERGRKQLDSGRL 629
            DAELDR+YGL L+EF   R+ LA RL  AG  E +  V AL KPSV  W++NQ+AR+  D + +L+ A  R+R AQ +       A ++ QA   E+AA+ ++  +A  +L+E    +S AT++R    +RAAA D      L +GRL
Sbjct:   12 DAELDRIYGLPLEEFTAARNELATRLRKAGQDEAAEGVRALRKPSVAVWSVNQLARRHPDEMQELLQAGKRLRDAQ-SAALRGKGADTVRQATAAERAAVRKLTRLAERLLTEERRSASQATLERIAATLRAAAVDPDAAALLAAGRL 158          
BLAST of mRNA_L-digitata_M_contig101349.1.1 vs. uniprot
Match: A0A1Q7UG61_9ACTN (Uncharacterized protein n=1 Tax=Actinobacteria bacterium 13_1_20CM_4_69_9 TaxID=1803481 RepID=A0A1Q7UG61_9ACTN)

HSP 1 Score: 90.9 bits (224), Expect = 2.440e-18
Identity = 57/151 (37.75%), Postives = 84/151 (55.63%), Query Frame = 3
Query:  186 DAELDRLYGLALDEFVPERDALAQRLADAGASEHSAEVEALAKPSVVAWAINQIARQRRDLVTDLIAAVDRVRAAQVNQPDEHSDAASLPQALRDEKAALARIEEIAPTILSEAGYVSSHATIDRALRCIRAAAADERGRKQLDSGRLASD 638
            + E+D L+ L LDEF   R+ LA+RL   G ++ + +V +L KPS+ AWA+NQ+AR+  + V  L+    R+R+AQ         A  L  A  +E+  + R+   A  +L EAG  +S  T++R    +RAAA  E GR  L  GRL  D
Sbjct:    5 EREIDELFDLPLDEFTAARNDLAKRLKRDGDADAAEQVRSLPKPSIAAWAVNQLARREPEAVRSLLNVAARLRSAQERSLKGERAADELRGAQAEEREIIRRLTRSAEGVLREAGRPASGTTLERVASLLRAAAVGEPGRTMLREGRLTGD 155          
BLAST of mRNA_L-digitata_M_contig101349.1.1 vs. uniprot
Match: A0A7W0H5Y7_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Thermoleophilaceae bacterium TaxID=2732252 RepID=A0A7W0H5Y7_9ACTN)

HSP 1 Score: 87.8 bits (216), Expect = 5.300e-18
Identity = 61/148 (41.22%), Postives = 82/148 (55.41%), Query Frame = 3
Query:  186 DAELDRLYGLALDEFVPERDALAQRLADAGASEHSAEVEALAKPSVVAWAINQIARQRRDLVTDLIAAVDRVRAAQVNQPDEHSDAASLPQALRDEKAALARIEEIAPTILSEAGYVSSHATIDRALRCIRAAAADERGRKQLDSGRL 629
            DAE+DRLYG  LDEFV ERD LA+RL  AG  E    V+AL KP+  AWA+NQ  R+RR     L+    R+R A   +     D A L + + +E++  + + + A  I SE G  S  A  DR    + AAA D+  R++L  GR 
Sbjct:    4 DAEIDRLYGTPLDEFVHERDELARRLIRAGDREAGGRVKALRKPTAGAWALNQAVRRRRAETGALLETGQRLREAH-EELLSGGDPAVLRETMAEERSLTSALADCAEAIASETGK-SGAALRDRVRATLHAAAVDDEAREELAGGRF 149          
BLAST of mRNA_L-digitata_M_contig101349.1.1 vs. uniprot
Match: A0A6J4TMR4_9ACTN (Uncharacterized protein n=1 Tax=uncultured Solirubrobacteraceae bacterium TaxID=1162706 RepID=A0A6J4TMR4_9ACTN)

HSP 1 Score: 87.8 bits (216), Expect = 5.760e-17
Identity = 59/142 (41.55%), Postives = 79/142 (55.63%), Query Frame = 3
Query:  204 LYGLALDEFVPERDALAQRLADAGASEHSAEVEALAKPSVVAWAINQIARQRRDLVTDLIAAVDRVRAAQVNQPDEHSDAASLPQALRDEKAALARIEEIAPTILSEAGYVSSHATIDRALRCIRAAAADERGRKQLDSGRL 629
            LYGL LD F+PER ALA+ L      + +  V AL KPSV AWA+NQ+ R +   V +L AA D +R AQ N      D  +L  A   E+AA+  + E A  +L   G+  S   ++R    + AAA DER R+Q+  GRL
Sbjct:    6 LYGLPLDRFIPERTALARALRADKRRDEATAVAALRKPSVAAWAVNQLVRSQGAGVAELYAAGDALRGAQENLLAGSGDGRALRAADERERAAVDALVEAARGLLDSDGHELSATVVERVSDTLHAAALDERAREQVRVGRL 147          
BLAST of mRNA_L-digitata_M_contig101349.1.1 vs. uniprot
Match: A0A538JRA0_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538JRA0_9ACTN)

HSP 1 Score: 87.0 bits (214), Expect = 8.320e-17
Identity = 68/176 (38.64%), Postives = 95/176 (53.98%), Query Frame = 3
Query:  189 AELDRLYGLALDEFVPERDALAQRLADAGASEHSAEVEALAKPSVVAWAINQIARQRRDLVTDLIAAVDRVRAAQVNQPDEHSDAASLPQALRDEKAALARIEEIAPTILSEAGYVSSHATIDRALRCIRAAAADERGRKQLDSGRLASDFVPPDSG---DLTLREAPGP---APR 698
            A LD LY   L+ F+  R+ALA+ LA A   + +A V+AL KPS+ AWA+NQ++R R   V  L+ A + +R AQ +   E  D + L +A R     + R+  +A  +LS++G   S A  DR    ++A A DE  R+ L  GRL  D  P   G   DLT+   P P   APR
Sbjct:    4 AGLDALYSEPLETFIAARNALAKALAQAADRDGAAVVKALRKPSIAAWALNQLSRTRPAEVERLLLAGEELRDAQ-HDALEGGDPSRLREARRAHDGEVDRLAGMAAEVLSDSGKPPSPAQRDRITSTLQAVAGDEEARELLRRGRLERDLEPAGFGFVDDLTIVSTPAPREPAPR 178          
BLAST of mRNA_L-digitata_M_contig101349.1.1 vs. uniprot
Match: A0A537ZSS7_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537ZSS7_9ACTN)

HSP 1 Score: 82.0 bits (201), Expect = 4.410e-15
Identity = 54/148 (36.49%), Postives = 83/148 (56.08%), Query Frame = 3
Query:  186 DAELDRLYGLALDEFVPERDALAQRLADAGASEHSAEVEALAKPSVVAWAINQIARQRRDLVTDLIAAVDRVRAAQVNQPDEHSDAASLPQALRDEKAALARIEEIAPTILSEAGYVSSHATIDRALRCIRAAAADERGRKQLDSGRL 629
            D ELDRLYGL LDEF   R+ LA RL  AG ++ +  V  L KP V  W +NQ+AR+    + +L+    ++R AQ       + A ++ +A   E+A+L R+  +A  +L+  G  ++ A ++R    +RAAA D      L++GRL
Sbjct:   12 DEELDRLYGLPLDEFTAVRNELATRLRKAGQADAAERVRTLRKPGVAVWTVNQLARRHPGEIDELVENGRQLRDAQAKAL-RGTGADAVREATAAERASLRRVTRLAEELLNGEGRPATAAMLERIASTLRAAAVDPDAAALLEAGRL 158          
BLAST of mRNA_L-digitata_M_contig101349.1.1 vs. uniprot
Match: A0A352FNP6_9BACT (Uncharacterized protein n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A352FNP6_9BACT)

HSP 1 Score: 77.8 bits (190), Expect = 3.270e-13
Identity = 54/155 (34.84%), Postives = 82/155 (52.90%), Query Frame = 3
Query:  186 DAELDRLYGLALDEFVPERDALAQRLADAGASEHSAEVEALAKPSVVAWAINQIARQRRDLVTDLIAAVDRVRAAQVNQPDEHSDAASLPQALRDEKAALARIEEIAPTILSEAGYVSSHATIDRALRCIRAAAADERGRKQLDSGRLASDFVPP 650
            + ++D L+ L L EF+  R+ALA RL  AG  + + +V+ALAKPS+ AWA NQ+  Q RD+   L++   R R AQ  +       A + + L   + ALA + ++  T+L +AG+  S  T+ R    + A +          SGRL  D  PP
Sbjct:   11 EEDVDALFTLPLSEFIGARNALAARLKKAGHGDEANQVKALAKPSISAWAANQLYWQHRDVFDQLMSTGQRFRKAQTARK-----VAEINETLGARREALAHLSDLTTTLLRDAGHSPSPETVHRITTTLEALSVYASLPGGPRSGRLTQDVDPP 160          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101349.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A538K529_9ACTN7.340e-2340.94Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A538DNU8_9ACTN4.010e-2241.99Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A537WXF2_9ACTN1.850e-2037.78Uncharacterized protein n=2 Tax=Actinomycetia bact... [more]
A0A538A579_9ACTN7.360e-1941.22Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A1Q7UG61_9ACTN2.440e-1837.75Uncharacterized protein n=1 Tax=Actinobacteria bac... [more]
A0A7W0H5Y7_9ACTN5.300e-1841.22Uncharacterized protein (Fragment) n=1 Tax=Thermol... [more]
A0A6J4TMR4_9ACTN5.760e-1741.55Uncharacterized protein n=1 Tax=uncultured Solirub... [more]
A0A538JRA0_9ACTN8.320e-1738.64Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A537ZSS7_9ACTN4.410e-1536.49Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A352FNP6_9BACT3.270e-1334.84Uncharacterized protein n=1 Tax=Blastocatellia bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101349contigL-digitata_M_contig101349:2..723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size722
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size150
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406617.9241476-UTR-L-digitata_M_contig101349:1..5731682406617.9241476-UTR-L-digitata_M_contig101349:1..573Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig101349 2..573 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406617.9318938-CDS-L-digitata_M_contig101349:573..7231682406617.9318938-CDS-L-digitata_M_contig101349:573..723Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101349 574..723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101349.1.1prot_L-digitata_M_contig101349.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101349 574..723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101349.1.1

>prot_L-digitata_M_contig101349.1.1 ID=prot_L-digitata_M_contig101349.1.1|Name=mRNA_L-digitata_M_contig101349.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=50bp
GSYDPCGDKECGDPCQICDEGDNECVEPAGQKTCNSRSVCTTAGPPVCS*
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mRNA from alignment at L-digitata_M_contig101349:2..723-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101349.1.1 ID=mRNA_L-digitata_M_contig101349.1.1|Name=mRNA_L-digitata_M_contig101349.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=722bp|location=Sequence derived from alignment at L-digitata_M_contig101349:2..723- (Laminaria digitata LdigPH10_18mv male)
GGCAGCTACGATCCATGCGGCGACAAGGAGTGCGGCGACCCCTGCCAGAT CTGCGATGAGGGCGACAACGAGTGTGTTGAGCCCGCAGGCCAGAAGACCT GCAACAGCCGCAGCGTCTGCACGACCGCCGGCCCGCCGGTCTGCAGCTAA ATCTCCCGGCCCCAACGTGCCCCGTGACGCTCAACGACGCTGAACTAGAC CGACTGTACGGACTCGCATTGGATGAGTTTGTGCCGGAGCGCGACGCCCT CGCGCAGCGGTTGGCGGACGCCGGTGCGTCCGAGCACTCCGCCGAGGTGG AGGCCCTCGCCAAGCCCAGCGTCGTGGCGTGGGCCATCAACCAGATCGCC CGGCAGCGCCGAGACCTGGTCACAGACCTGATCGCCGCCGTGGATCGGGT GCGCGCCGCTCAAGTCAACCAGCCCGATGAGCACAGCGACGCGGCCTCGC TGCCTCAGGCGCTCCGCGACGAAAAGGCGGCGCTGGCGCGCATCGAAGAG ATCGCGCCCACCATTTTGAGCGAGGCCGGCTACGTCAGCAGCCACGCCAC CATCGACCGCGCGCTGCGTTGCATTCGCGCCGCCGCAGCCGATGAGCGCG GCCGAAAGCAGCTCGATAGCGGCCGCCTCGCGAGTGACTTTGTGCCCCCG GATTCCGGCGATCTGACGCTTCGTGAAGCCCCCGGTCCGGCCCCGCGAGG CCGCGACGAGGGCCGTCGCGCG
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Coding sequence (CDS) from alignment at L-digitata_M_contig101349:2..723-

>mRNA_L-digitata_M_contig101349.1.1 ID=mRNA_L-digitata_M_contig101349.1.1|Name=mRNA_L-digitata_M_contig101349.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=150bp|location=Sequence derived from alignment at L-digitata_M_contig101349:2..723- (Laminaria digitata LdigPH10_18mv male)
GGCAGCTACGATCCATGCGGCGACAAGGAGTGCGGCGACCCCTGCCAGAT
CTGCGATGAGGGCGACAACGAGTGTGTTGAGCCCGCAGGCCAGAAGACCT
GCAACAGCCGCAGCGTCTGCACGACCGCCGGCCCGCCGGTCTGCAGCTAA
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