mRNA_L-digitata_M_contig10134.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-digitata_M_contig10134.1.1
Unique Name	mRNA_L-digitata_M_contig10134.1.1
Type	mRNA
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))

Homology

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BLAST of mRNA_L-digitata_M_contig10134.1.1 vs. uniprot
Match: D8LC56_ECTSI (Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC56_ECTSI)

HSP 1 Score: 277 bits (708), Expect = 1.650e-88
Identity = 139/224 (62.05%), Postives = 171/224 (76.34%), Query Frame = 1

Query:    1 IDVMVLYTKKAMLESNSMDGAVRTTDQMESAISAAYEGANNALDSSGVGFTLRVVYMAQVDYTETSEISDAVYALQGGDHEELLDVHALRDEYGADLVQLVGFYLNTCGIGFTMQSPTSAFDGYGYSVVHANCLSNYSHIHEIGHNMGANHNKEN---SHSDHAYAYAWRYCDGDIPYRTLMAYENGCSAAPRMNIFSTPDKSYAGQPQGTDTANNARVLNEAM 663
            IDV+VLYT+KAMLES+S DGA R+  QMES I+ AY+GANNAL +SGV F++R+V+M Q  + E+  I D V A+Q  +      VH LRDEYGADLVQL+G+YLNTCG+GFTM SP+S F  YGYSVVH NCLSN+SHIHE+GHN GANHNKEN   S    AY YA+R C+    +RT+MAY +GC + PR+N+FS PD +YA Q QGT+ A+NARVLNEAM
Sbjct:  219 IDVLVLYTEKAMLESDSGDGAGRSIAQMESDIATAYQGANNALSASGVNFSVRIVHMEQAPFDESDSIVDDVRAIQKNE-----GVHKLRDEYGADLVQLIGYYLNTCGVGFTMGSPSSGFAQYGYSVVHTNCLSNFSHIHELGHNFGANHNKENAGGSDGVDAYNYAYRNCEVGTKFRTIMAYSSGCPSTPRVNVFSNPDLTYANQRQGTENADNARVLNEAM 437

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BLAST of mRNA_L-digitata_M_contig10134.1.1 vs. uniprot
Match: A0A6H5JDN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN0_9PHAE)

HSP 1 Score: 275 bits (703), Expect = 1.430e-87
Identity = 143/242 (59.09%), Postives = 174/242 (71.90%), Query Frame = 1

Query:    1 IDVMVLYTKKAMLESNSMDGAVRTTDQMESAISAAYEGANNALDSSGVGFTLRVVYMAQVDYTETSEISDAVYALQGGDHEELLDVHALRDEYGADLVQLVGFYLNTCGIG----------------FTMQSPTSAFDGYGYSVVHANCLSNYSHIHEIGHNMGANHNKEN---SHSDHAYAYAWRYCDGDIPYRTLMAYENGCSAAPRMNIFSTPDKSYAGQPQGTDTANNARVLNEAMVS 669
            IDV+VLYT+KAMLESNS+DGA R+  QMES I+ AY+GANNAL +SGV F++R+V+M Q  + E+  I D V ALQ  +      VH LRDEYGADLVQL+G+YLNTCG+G                FTM +P+S F  YGYSVVH NCLSN+SHIHE+GHN GANHNKEN   S    AY YA+R CD    +RT+MAY +GC + PR+N+FS PD +YA Q QGT+ ANNARVLNEAMV+
Sbjct:  195 IDVLVLYTEKAMLESNSVDGAGRSIAQMESDIATAYQGANNALSASGVNFSVRIVHMEQAPFDESDSIVDDVRALQKNE-----GVHKLRDEYGADLVQLIGYYLNTCGVGSKVSSFFALYPARTHRFTMGTPSSGFAQYGYSVVHTNCLSNFSHIHELGHNFGANHNKENVGGSGGVDAYNYAYRNCDVGTKFRTIMAYSSGCPSTPRVNVFSNPDLTYANQRQGTENANNARVLNEAMVT 431

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BLAST of mRNA_L-digitata_M_contig10134.1.1 vs. uniprot
Match: D8LCC0_ECTSI (Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC0_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 8.980e-40
Identity = 66/110 (60.00%), Postives = 88/110 (80.00%), Query Frame = 1

Query:  334 FTMQSPTSAFDGYGYSVVHANCLSNYSHIHEIGHNMGANHNKENSHSDHAYAYAWRYCDGDIPYRTLMAYENGCSAAPRMNIFSTPDKSYAGQPQGTDTANNARVLNEAM 663
            + M +P +AF+G+GYS+VH +CL N SHIHEIGHNMGANHN+E++ S+H YA+A RYC GD PYRT+MAYE GC  APR+ +FST DK+YA +  GT + +NARV+ E++
Sbjct:  302 YVMATPRAAFEGFGYSIVHTHCLDNLSHIHEIGHNMGANHNREDTSSEHDYAHAQRYCTGDTPYRTIMAYETGCLQAPRVAMFSTQDKTYASKSLGTTSTDNARVIEESL 411

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BLAST of mRNA_L-digitata_M_contig10134.1.1 vs. uniprot
Match: A0A0F2IZ28_9BACT (Peptidyl-Asp metalloendopeptidase n=1 Tax=Candidatus Magnetoovum chiemensis TaxID=1609970 RepID=A0A0F2IZ28_9BACT)

HSP 1 Score: 147 bits (370), Expect = 7.490e-38
Identity = 91/236 (38.56%), Postives = 137/236 (58.05%), Query Frame = 1

Query:    1 IDVMVLYTKKAMLESNSMDGAVRTTDQMESAISAAYEGANNALDSSGVGFTLRVVYMAQVDYTETSEISDAVYALQGGDHEELLDVHALRDEYGADLVQL-VGFYLNTCGIGFTMQSPTSAFDGYGYSVVHANCLSN-YSHIHEIGHNMGANHNKENSHSDHAYAYAWRYCDGDIPYRTLMAYENGCSA----APRMNIFSTPDKSYAGQPQG-----TDTANNARVLNEAMVSCA 675
            IDV+V+YT  A   + S          +ES I+ A   AN +  +SG+   L VV+ AQ +YTETS +S  + AL+  +  ++  +H LRD+YGADLVQL V    N CG+G+ M + +S+F  Y +SVV  +C +  Y+  HE+GHNMGA H++  + ++ AY+Y++ Y +    +RT+MAY + CS       R+N +S PD SY G P G     +++ANNA  L     + A
Sbjct:  228 IDVLVVYTSAAKTAAGSQSA-------IESLITLAETEANESFTNSGIDIELNVVHTAQTNYTETS-MSTELSALRNTNDGKMDSIHTLRDDYGADLVQLWVSNGTNYCGLGYLMTNVSSSFASYAFSVVRYDCATGTYTFAHELGHNMGAEHDRYVATTEGAYSYSYGYVNTTDKWRTIMAYNDKCSDNGYNCTRINYWSNPDVSYDGVPTGKSASASNSANNALTLTNTAATIA 455

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BLAST of mRNA_L-digitata_M_contig10134.1.1 vs. uniprot
Match: A0A836CMI7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMI7_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.510e-37
Identity = 85/208 (40.87%), Postives = 125/208 (60.10%), Query Frame = 1

Query:   70 TTDQMESAISAAYEGANNALDSSGVGFTLRVVYMAQVDYTETSEISDAVYALQGGDHEELLDVHALRDEYGADLVQLVGFYLNTCGIGFTMQSPTSAFDGYGYSVVHANCLSNYSHIHEIGHNMGANHNKENSHSDHAYAYA--WRYCDGDIP----YRTLMAYENGCSAAPRMNIFSTPDKSYAGQPQGTDTANNARVLNEAMVSCA 675
            T D + S I+A    AN AL +SGV F ++   +  VDY +T+ + +A+ AL  G    +  ++  RD+Y ADLVQ+V      CG G  + S +S+F  YG+SVV+++C+ +YSHIHEIGHNMG  HN ENS     ++Y   +RYC+  +     YR++M+Y   C+ A R+  FS+PD  Y G+  G DTA+N RVL +   + A
Sbjct:  260 TDDTITSKIAAGVATANQALANSGVSFRVKAAAIMHVDYDDTTHM-EALAALNTG---SIAGINTARDKYSADLVQMVIESSEYCGYGNLLYSASSSFAPYGFSVVYSDCIVSYSHIHEIGHNMGCQHNAENSGDATMWSYGVGYRYCNDGVSKSPYYRSVMSY--ACTGATRVPYFSSPDVEYQGRTTGLDTADNVRVLEQTHYTVA 461

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BLAST of mRNA_L-digitata_M_contig10134.1.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 2.960e-37
Identity = 89/242 (36.78%), Postives = 138/242 (57.02%), Query Frame = 1

Query:    1 IDVMVLYTKKAMLESNSMDGAVRTTDQMESAISAAYEGANNALDSSGV-GFTLRVVYMAQVDYTETSEI-SDAVYALQGGDHEELLDVHA-------LRDEYGADLVQLVGFYLNTCGIGFTMQSPTSAFDGYGYSVVHANCLSNYSHIHEIGHNMGANHNKENSHSDHAYAYAWRYCDGDIPYRTLMAY-ENGCSA---------APRMNIFSTPDKSYAGQPQGTDTANNARVLNEAMVS 669
            IDV+++Y+ +A   +  +  A   T  +E  ++      N A+ +SG+ G   R+V +A++ Y++ + I SD +      D +  LD  A       LR++Y  DLVQLVG++  TCG+G+      +    +G+S+V +NC  N+SH HEI HNMG  H+K NS + HAY + WRYC+G  PYRT+M+Y  NGC            PR+N FS P+ +Y  +  GT  A+NAR + ++MV+
Sbjct:  174 IDVLIVYSPEAAY-ARGIAEAQLLTRIVEGMVTL-----NQAITNSGIAGLEYRLVQVAELPYSQMAYIPSDDI------DLKPELDALAANSNVTDLRNQYQGDLVQLVGYFPGTCGLGYIFNGDAA----FGFSLVDSNCFDNFSHTHEIAHNMGCYHDKNNSDTQHAYRHGWRYCEGADPYRTIMSYYHNGCGGDPTSEDDPIVPRVNYFSNPNVTYLNKSTGTAAADNARCIEDSMVA 399

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BLAST of mRNA_L-digitata_M_contig10134.1.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 3.220e-35
Identity = 87/244 (35.66%), Postives = 136/244 (55.74%), Query Frame = 1

Query:    1 IDVMVLYTKKAMLESNSMDGAVRTTDQMESAISAAYEGANNALDSSGVG-FTLRVVYMAQVDYTETSEI---SDAVYALQGGDHEELLD-------VHALRDEYGADLVQLVGFYLNTCGIGFTMQSPTSAFDGYGYSVVHANCLSNYSHIHEIGHNMGANHNKENSHSDHAYAYAWRYCDGDIPYRTLMAY-ENGCSA---------APRMNIFSTPDKSYAGQPQGTDTANNARVLNEAMVS 669
            IDV++ Y+ +A   S  +  A   T  +E  ++      N A+ +S +     R+V++A++ Y++ +     SD +      D E  LD       V+ LR+EY  DLVQLVG++  TCG+G+           +G+S+V +NC  N+SH HEI HNMG  H+++NS +   Y + +RYC G  PYRT+M+Y +NGC            P++N FS P+ +Y  +P GT TA+NAR + E+MV+
Sbjct:  352 IDVLIFYSPEAA-SSEGISDAQLLTRIVEGMVTL-----NQAITNSAIADLEYRLVHVAELPYSQMTYDPIDSDDI------DLEPELDALAANSAVNDLRNEYQGDLVQLVGYFPGTCGLGYIFNGNAE----FGFSLVGSNCFDNFSHTHEIAHNMGCYHDRDNSETQDEYRHGYRYCTGSDPYRTIMSYYQNGCGGDPTPEADPIVPQVNYFSNPEVTYLNKPTGTATADNARCIEESMVA 579

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BLAST of mRNA_L-digitata_M_contig10134.1.1 vs. uniprot
Match: A0A836CH47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH47_9STRA)

HSP 1 Score: 134 bits (336), Expect = 3.840e-34
Identity = 84/203 (41.38%), Postives = 114/203 (56.16%), Query Frame = 1

Query:   82 MESAISAAYEGANNALDSSGVGFTLRVVYMAQVDYTETSEISDAVYALQGGDHEELLDVHALRDEYGADLVQLVGFYLNTCGIGFTMQSPTSAFDGYGYSVVHANCLSNYSHIHEIGHNMGANHNKENSHSDHAYAYA--WRYCDGDI--PY-RTLMAYENGCSAAPRMNIFSTPDKSYAGQPQGTDTANNARVLNEAMVSCA 675
            + S I  A   AN AL +SGVGF +    +  V++   +E    V AL      E+  + A R  Y ADLVQ+V      CG G  MQSP+S+F  Y YSVV+  C + +SHIHEIGHNMGA H+  N+ +   + YA  +RYC G++  PY R++M+Y   C+ A R+  FS+P   Y G+  G   A+NARVL E     A
Sbjct:  130 IRSMIVGALASANQALSNSGVGFKIAAARIMHVNWNYDNE--GHVAALNALSQGEMPGIAAARKLYKADLVQVVIDNAQYCGFGSLMQSPSSSFREYAYSVVYGGCFAQFSHIHEIGHNMGARHDVGNTDASATWPYAMGYRYCSGEVDPPYFRSVMSYS--CTGAMRVPYFSSPTVYYQGRQTGMQGADNARVLRETKYIVA 328

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BLAST of mRNA_L-digitata_M_contig10134.1.1 vs. uniprot
Match: UPI00037429D7 (M12 family metallo-peptidase n=2 Tax=Methylobacter TaxID=429 RepID=UPI00037429D7)

HSP 1 Score: 138 bits (347), Expect = 7.120e-34
Identity = 90/232 (38.79%), Postives = 129/232 (55.60%), Query Frame = 1

Query:    1 IDVMVLYTKKAMLESNSMDGAVRTTDQMESAISAAYEGANNALDSSGVGFTLRVVYMAQVDYTETSEISDAVYALQGGDHEELLDVHALRDEYGADLVQLVGFYLNTCGIGFTMQSPTSAFDGYGYSVVHAN----CLSNYSHIHEIGHNMGANHNKENSHSDHAY--AYAWRYCDGDIPYRTLMAYENGCSAAPRMNIFSTPDKSYA-GQPQGTDTANNARVLNEAMVSCA 675
            ID+MV+YT KA   ++   G       +E+ I+ A   AN A  +S V   L VVYM +V Y ET  ++ ++  L+G +  ++  VH LR++YGAD V LV    N CGI + M +P+++F  Y + VVH +    CLS+ +  HE+GHN G  H+K NS S  AY  +Y +R C     +RT+M+Y   CS   R++ FS P+ S   GQ  GT T NNA  +N      A
Sbjct:  189 IDLMVVYTPKAKNNASGQTG-------IEAKIANAVAKANQAYINSKVDMQLNVVYMGEVSYNETGNMTTSLTDLRGTNDGKMDAVHNLRNQYGADQVLLVTADTNYCGIAYVMSNPSTSFAPYAFGVVHDDSTYACLSDNTLAHELGHNQGDQHDKANSSSAGAYDYSYGYRLCQTG-GFRTVMSYS--CSGGARVSYFSNPNVSLTTGQTTGTATENNALSMNNTKAIVA 410

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BLAST of mRNA_L-digitata_M_contig10134.1.1 vs. uniprot
Match: A0A839HE77_9GAMM (Fibronectin type III domain-containing protein n=1 Tax=Thiospirillum jenense TaxID=1653858 RepID=A0A839HE77_9GAMM)

HSP 1 Score: 137 bits (345), Expect = 1.260e-33
Identity = 88/229 (38.43%), Postives = 129/229 (56.33%), Query Frame = 1

Query:    1 IDVMVLYTKKAMLESNSMDGAVRTTDQMESAISAAYEGANNALDSSGVGFTLRVVYMAQVDYTETSEISDAVYALQGGDHEELLDVHALRDEYGADLVQLVGFYLNTCGIGFTMQSP--TSAFDGYGYSVVHANCLSNYSHIHEIGHNMGANHNKENSHSDHAYAYAWRYCDGDIPYRTLMAYE--NGCSAAPRMNIFSTPDKSYAGQPQGTDTANNARVLNEAMVSCA 675
            ID+MV+Y+ +A+ +         T D ++S I+AA   AN A D+S +   L  VY  QV+YTE + +  A+  LQ      + D+HALRD+Y ADLV LV    + CG G+ M S   +SAF  Y ++VV+ +CLS  S  HEIGH  G  HN E++ S  AY+Y++ Y    I +R +M+Y+     +  PR+  FS P+ +Y G   G+ TAN A+ +N      A
Sbjct:  280 IDLMVVYSPQAVSKMG-------TEDALKSTITAAIAAANTAYDNSQINVALNPVYYGQVNYTEPATMPTALTQLQSKTDGIIDDIHALRDQYSADLVVLVDTNTDYCGYGYIMNSSYTSSAFAPYAFAVVNYSCLSLNSLAHEIGHLQGNQHNTESTTSTGAYSYSYGYRVCGI-FRDIMSYDCPTPNTGTPRVLHFSNPNVTYQGLATGSSTANAAQTINNTAAIVA 500

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig10134.1.1 vs. uniprot

BLAST of mRNA_L-digitata_M_contig10134.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LC56_ECTSI	1.650e-88	62.05	Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarp...	[more]
A0A6H5JDN0_9PHAE	1.430e-87	59.09	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LCC0_ECTSI	8.980e-40	60.00	Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarp...	[more]
A0A0F2IZ28_9BACT	7.490e-38	38.56	Peptidyl-Asp metalloendopeptidase n=1 Tax=Candidat...	[more]
A0A836CMI7_9STRA	2.510e-37	40.87	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A6H5JRC1_9PHAE	2.960e-37	36.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JF50_9PHAE	3.220e-35	35.66	LNR domain-containing protein n=2 Tax=Ectocarpus s...	[more]
A0A836CH47_9STRA	3.840e-34	41.38	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
UPI00037429D7	7.120e-34	38.79	M12 family metallo-peptidase n=2 Tax=Methylobacter...	[more]
A0A839HE77_9GAMM	1.260e-33	38.43	Fibronectin type III domain-containing protein n=1...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig10134	contig	L-digitata_M_contig10134:876..8609 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	2880.D8LC56
PFAMs	Reprolysin_3,Reprolysin_4
Model size	687
Max annot lvl	2759\|Eukaryota
Hectar predicted targeting category	other localisation
Exons	4
Evalue	6.2e-87
EggNOG OGs	2E79G@1\|root,2SDWE@2759\|Eukaryota
Ec32 ortholog description	Metallopeptidase, catalytic domain
Ec32 ortholog	Ec-20_004540.1
Description	Metallo-peptidase family M12B Reprolysin-like
Cds size	678
COG category	S

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682406617.8315074-CDS-L-digitata_M_contig10134:875..1041	1682406617.8315074-CDS-L-digitata_M_contig10134:875..1041	Laminaria digitata LdigPH10_18mv male	CDS	L-digitata_M_contig10134 876..1041 -
1682406617.842032-CDS-L-digitata_M_contig10134:3901..4090	1682406617.842032-CDS-L-digitata_M_contig10134:3901..4090	Laminaria digitata LdigPH10_18mv male	CDS	L-digitata_M_contig10134 3902..4090 -
1682406617.8516903-CDS-L-digitata_M_contig10134:5925..6080	1682406617.8516903-CDS-L-digitata_M_contig10134:5925..6080	Laminaria digitata LdigPH10_18mv male	CDS	L-digitata_M_contig10134 5926..6080 -
1682406617.8613727-CDS-L-digitata_M_contig10134:8432..8600	1682406617.8613727-CDS-L-digitata_M_contig10134:8432..8600	Laminaria digitata LdigPH10_18mv male	CDS	L-digitata_M_contig10134 8433..8600 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682406617.8685539-UTR-L-digitata_M_contig10134:8600..8609	1682406617.8685539-UTR-L-digitata_M_contig10134:8600..8609	Laminaria digitata LdigPH10_18mv male	UTR	L-digitata_M_contig10134 8601..8609 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig10134.1.1	prot_L-digitata_M_contig10134.1.1	Laminaria digitata LdigPH10_18mv male	polypeptide	L-digitata_M_contig10134 876..8600 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-digitata_M_contig10134:876..8609-
coding sequence from alignment at L-digitata_M_contig10134:876..8609-

protein sequence of mRNA_L-digitata_M_contig10134.1.1

>prot_L-digitata_M_contig10134.1.1 ID=prot_L-digitata_M_contig10134.1.1|Name=mRNA_L-digitata_M_contig10134.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=226bp
MVLYTKKAMLESNSMDGAVRTTDQMESAISAAYEGANNALDSSGVGFTLR
VVYMAQVDYTETSEISDAVYALQGGDHEELLDVHALRDEYGADLVQLVGF
YLNTCGIGFTMQSPTSAFDGYGYSVVHANCLSNYSHIHEIGHNMGANHNK
ENSHSDHAYAYAWRYCDGDIPYRTLMAYENGCSAAPRMNIFSTPDKSYAG
QPQGTDTANNARVLNEAMVSCALRG*

mRNA from alignment at L-digitata_M_contig10134:876..8609-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-digitata_M_contig10134.1.1 ID=mRNA_L-digitata_M_contig10134.1.1|Name=mRNA_L-digitata_M_contig10134.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=7734bp|location=Sequence derived from alignment at L-digitata_M_contig10134:876..8609- (Laminaria digitata LdigPH10_18mv male)
ATCGATGTGATGGTGCTCTACACGAAGAAGGCGATGCTCGAGTCCAACTC
CATGGACGGAGCAGTGCGCACGACCGATCAGATGGAAAGCGCCATCAGCG
CCGCCTACGAGGGGGCTAACAACGCCCTGGACAGCTCAGGGGTTGGCTTC
ACGCTCAGGGTGGTCTACATGGCGCAGGTAGGGGAGCAGCTCCCCGAGAT
ACTGCTAACATTTTCCCCACGGGCTACCAATGGTGGCAGAACCCCCAAGA
GACTAGGCTAGAAGTTTGGGGATAATAATAAGGAAGAGAAACGACACGCA
CACGAGGGTAAGAGGAAAACAAGCGACGACATTGAGATAATGGCGAAGGG
ACAACAAGTATGGGTGTGATCTCATGCCGCAGCAGAGAGGCCTCATTAAT
CCCAAACTATATACGAATTAACGTACGACGCAATGTTACAACAGTAATCT
GAAACCGTAAAAGAGGGGACGTCTGCAAGGCGGACCCCTTATCGGAAAAG
CCATATTTTGTTGTACTTGTAGAGTGGACGTGAGCCACACTCGGTCAGCA
ACAGGGCAACTCTACATCGGCTGGACAAGGTAGAAAGAGGTTGGGAAAAG
AAACAGACCATCCCACCCGCCCATCGTCGATAGCGAGGAGACCGTCGACA
ACGACGTCAGAGTTGCTGTTTATTTTATGTGTTTTATACCGGGGTACCTA
CTCTCTGCGACGAGGTGCCGCGTTGATTGTCGCAGAATCAACGCGGGAGT
AGTGACCCTGGGTGAGAGTCTCCGGCTGATCGCAGCAGGAGGCCTCATTA
ATCCCAAACTATATACGAATTAACCTACGACGCAATGTTACAACAGGAAA
AATTCAACTCTAATTCTAAGTGGTTCGTCCCCAAAACGGGGGTGTGTGCA
GTTCCAAAGGGGATGGCTAGGGTATCTCTCTACCCCTCACACGTGACTAT
TGATAGTGTTGTGATTATACTTCGTATGTTATTATGATTGTGCTTGCCAT
CCGACAATGTGCAGCATGAGCTTCAACGTTGATCACTCATACCATTCCCT
AAAGAAGAAGAAAACCACTGAAACCAAAGGCTTCATTATTGGTGTATTTC
CCGTCCGACAATGTTGTTAAGATTGGCAGTATGGACCTAGGGGACCGACT
ACTGCTGCAATGTGCCTTCGGCTCTGCTTGAGGGTCACAAGGGATACCAT
AACAATGTGGAGCATGACCTTCAACGTTGACCACTCATAAGCATTCCCGA
AAGCAGAGGAAACCCACGGGAATCGAAAAAAAGGAAACCTGTGAACATAC
TTTTTATAGGTTTTCAGGCCCAGTTCGGGTGAGTAATTGGTTAGCCTTTC
ACCTGCAGCCCAGTGGACTCCAAATAACACCGTTTCAAATGGCATCATCG
GCAGAACATGGGTTTCGGGAATCGTTAGCTCGATTCCCATCGTCCGTCAA
AAATACATTGGTCCGTTAACCTCCCAACAAACAGGGAAGGACGCGCTTTT
TTTTACCAATGCAAAAAAATATTCCACTCTAATTATACTGGTAAGTGGTT
TGTCCCCCAAACGGGGTGTGTGTGTGCAGTTCTAGAGGGGTTTGCTTAGC
CTCTTTAGGACCGCACTTCGTTTTTGAGGGCAAATTACTTGAAATTAGAG
TCATAGTGTCCCCAAAACGGGAGTGCGGTCCTAAAGGCGTTAACTTAAGG
CATTGGACCCCTCACACGTAGCAGTTGATGCGTACACTCTAGTTTACGTC
TTGTTTTTGCCATCCGACAATGGTTGATGGAGCATGAGCTTCAACGTCGA
TCACTCATAAAAGTTTAGCCTTCCAGAGAGAAGAAGAAGAAGAAGGAAAC
CAAGGGAGAACCCAAACCGGTCTTAAGCTTGCTGCCGGCCGACAATGTGC
AGCACGAGCTTTTCAACGCTAATCACTTCGCAAAACTCCCCCAGAAAAAA
GGAGAAAACGAACGCAATAAGGTAGCTCTTGCCTTGATCTGTGACGATGT
CTTTCGGGCAAAAAAGGGGAGGAAAGTGGTTCCTCTTTTCAAAGTAACCG
TAGTGAAACCTGCAAGACGAATAGAGGGATACTGTTAAGGTATTCCTGTA
GTCTGTTGGGCTACTGGTAAAAGGTAAACCAATCGACTACCCAAACTACG
CCTTAAAACACTCCCCCCCCCTGGAACGGCGGGGTTATTCAAGACGACCG
GATATACGAGTCGTCGTGGTACGATCCTAGGCGGTTTCAATACAGGCATA
CGATACCACATCAATACCCCCTTCTTTGCCTGATGCAACTGACCCAACGA
GCAGGTAGCCTACGCCGAAACCTGCGAAACCTACGTAGAGTATATCAAAA
TGGTTCCCTTTTTTTGCCTGACACAACGGGCACATCATCATCATCATCAT
CATCACCATTGTCATCATCATCGACATCATCATCGTCATCATAATCATAA
GCATCATCATCACCCCCACCACCATCATCATCGTACTATACTCCCCTTTT
TTGCCTGATGCAACTGACCGAACAAACAGGTAGACTACACGGAAACGAGC
GAGATCTCGGACGCGGTGTACGCCCTTCAGGGCGGCGATCACGAAGAGCT
TCTCGACGTACACGCGCTGCGGGACGAGTACGGTGCCGACCTCGTGCAGC
TCGTCGGTTTCTACCTTAACACATGCGGCATCGGGTACGTTCATGAGCAA
ACATGCTACATATTCGTAGGAAAACCGGTCTTTTTGGACGCGTCAAGGAC
GCGTCAAGGCTTCTTTTGGACTTAACATACTAGTTTTAGTGTAGCGGGGC
GGTCAGTCAAGCTTTCAAACCGCGGTGTCCTATGACACGTCTCAACACAT
GCGGCACCGGGTACGTTCATGAACAAACATGCCACATATTCACATGTAGG
AAAACCTGTCTTCTTGGACGCGTCAAGGGCGCGGACGCGTCAAGGCCTCT
TGATGGCCTTCGCATACTTGTTTTGGTGTAGCGGGGCGGTCAGTCTAGCT
CTCAAATTCGCGGTCTCTTGTATTAGATTGCGGTATCGGGAACGTTCATC
AAACGCCCCCCACTGCTTCACGTTTTTCGCCGGATATCTAACCCTAACCC
TATACTTCGGACATGTATTTGTGTATATACTTCGTACGAAGAACTATCAT
TTGCCCTCCGATAATGTACAGCTCAAATCTCGATCGTTTACAGCCAATGT
CAGTAGGAACAAGAAAACCCAAAAGTAAATCAAACAAGGAGGCATACAAT
TTACGTCTGCTCACTATTTTGTAGACATACGTACAATATCCATCGGCCTC
GGAGAGAGCTCCATCTTCCGAAAGATATTTACGACTTCGGAAAAAAACAA
GTTATGTCGTCATTTTCTTGCGTATTGTTTCCTTCAGATATTTGCACGCT
ACTGGCATTATTTCCTGTAGATGTGTACATACAAATGACCGTCTGTGGGT
TCGCTCCTACGGGTCATTTGTCATTTTTTGTATTTTTATACGAAAACTTC
TCTGTCGTTATTGTCCTGCGTATTACTTCCTCTAGATATTGTACTACGTA
CAGCACTGGCATTGCTTCCTTTAGATACGTATAATACCTGTTACCGTCTG
TTGGTTCGATTCTACTGCGATTTAGCTTTTTTTGACAGAACTGTCTCGTT
TTTACTGCCTCGGCTTACCTACCTCGTTCTTTGTCTGCAAACAACCTGAC
TCAACCATAGAAGCTTCTTGATGCTCATCTTGGCAGCATTGCCGCATTTA
CGGCCTTGATTTGCCTACATTCTCGACCATTACGGGCATGCGCGGAGCCG
CAGGCGGGCGTCAGCCCGCCGCGACGAAGCCCCCTTGTATATTTATACTA
TTCATTTTTCGGACGCTTTTACCTTCATCCTGCCGCCGCGGTTGCAGACA
TGCGAGGTCGAACGACATGTGACCGCGACATGCGTTTGCTTAGTTGTGGA
CTTTCGGAGGGGGGATATTGATGGAAAGAAATAACGATTACGTGGGTGTG
TATTTTTCACATTAAACCGTTGTAGCTCTGTGGTCACAAAACTACGATAC
AGAGACCACCCATTGTAATGCAGTAAAGGAGAGTGAACAATGCAATGTCA
TGTCGTCGTCCAGCGTATCGGCCACAAGGAGCAGCCTTGCCTTAAGGGGC
AGGGAATGATATATACTGCTATTAGATGTAGTTCCCGCACTACAATGCAA
TGGCGTGGTCGACGTAAAGCGCAAAGCGTTACTACGCGCTGGTGCACGCT
ACCACTATTGTAGACAAATTGCTAAAGATTGCTCTTCTTAATCGACACCT
GGGTCTCACAAGAAGTAACTCCCACCCCCCGCCCGAACCCACCCCACCCC
ACCCCACCCCCCTCCTCCTCTCCCCCCCCCACCCCCCATCCCCCTCACCC
TTCTCCTCACCCCCTCACCCCCCCTCACCCCCCCTTTAATGAGTGCACCC
CCTCCCACTCCGCCGCCACTGCCGCCCCACGCCCCCTTCCCTCCCACCAC
GACGCTCGCATCTCTCTAGGTTCACCATGCAATCCCCTACATCTGCCTTC
GATGGCTACGGCTATTCCGTTGTGCACGCGAACTGCCTGTCGAACTACTC
CCACATTCACGAAATCGGCCACAACATGGGCGCCAACCACAACAAGGAAA
ACTCGCACTCAGACCACGCCTACGCCTACGCGTGGCGCTACTGCGACGGG
GACATCCCGTGAGTAATCCAATCCCCCGACACAAGGCGTTTTTTCGTTGC
TTGCGCGGGGACATCCCTTGAGTGTCCCCTCCCCGATAAAAGGCGTTATT
TTAGGTTAACTACGTATAATACCGCCACTGCAACAGGGACATCCCGTGGG
TGTCTTCGAAACAAGGCGCTATTTCTATATTTGCGTACCGCTATTAATAG
TGGAGACATCCCGTGCGTGTCCCCGACATATCAGGTAAGGCATTATTTTA
GGTTATTTGCGTACCACTACTGCGACAGGGGCATCCCGTGAGCACCCCCT
CCCCGACATAAGGCGTTATTTAGTTTATTCGCGTACGACTGTTGCGTCGG
GCACACCTAATTATTATCCCCGACATGAGGCGTTGATTAGTTATTTGCGT
ACTGCTATTGTGACGGGGACATCTCGTGAGTATCCCCGACATGAGGCGTT
ATTTCAGATTTTTATTTTAGTATTGGTTGTTGGGTGGATAGTTGTCTCCA
CATATATATAAACACCGTTCTTTCTACGCGACGACGGAGACATCCCGTGA
GTATCCCCGACATGAGGCGTTATTTCGCTATTTACGTACCGCTATTGTGA
CTCTCGTGAGTATCCCCGACAGAAGGCGTTATTCAGAATGTTTCGGCAGC
GGTGGTCGTTGAGTGATTGTCTGCACGTTAGTAACCGTTCTTTGTGCCTG
ATGGAAGCTACAGACGTGTGCTACTCTGTAGGAAACCCGGGGATCTACCC
CGGATGTCCCCTGACGACCACTTGATCAGCGCTAACTACTTCTGAAGCTT
CTCACTTGATCAGCGCTACCTACCGTATACCCCACAAAAACTGACTTTTG
AGAAATAATAGACGCTTAAAATCGGCCTATCGTAGGTATTGCTCGAGTGA
TATTGTAAAACCTCACTTGAAAAACAGCGCTACATATATATGTCCCGCAA
AAACTGAATCTCGAGAAATAACGAACGCTTTAAAATCGGCCTATCGCGGG
TACTGCTAAAAAAATTGAGGAACCCCGCCAGTCAGAGTCCGAAACGCTTA
CCCAAATAAGAACAAGGGCTACGAATAAGAAAGAGTAAAAATAAGAACAC
AGGGCTCGCTTTTTCTGTTAGGACGCTATACCAGTCTGACAATAAATATA
AGCAACTCTAAATGGATAATATACAATGAGTAAGTTGCTTATATTTATTG
TCAGAGTGGTATAAGAATAAGAAACTGTGATGAAGAAAAAGTGCTCAGCG
GCGAGCGCTGTGCTGAAATCCTACACTTCGTATAATAGCCTATCTATGCT
CAAGTTTTGTTTAAGCCTGGTGTCGAGTCATCCCACGGTAGCGGTTGCAC
TTTCTTGACCAAATGTTTCTGACCGGTTGACCTCCTCCAGTGAGGAACTA
CCGGTTAGTATGATAATTTTACAAGAAAATGTTTTTTAGGACTAGCTCAT
AGAAATGTTGGCCAGGTTGCCCGAACGAATTTCTTGGAAGTTCTGTTTCG
GGTGAACTTATTGAGCTCCTTATGTGAGGAGCTCAGAAAATTCTGCTGCA
CGCCCACCGTGGGATGGCTCTGTCACTAAATAAGAATCTACAGTAAGGCT
TGCTCAGACTAGGTCTTTCTTGATTACGGCTCCATGCTGTGTCGTAATCG
TAGCACGTCTCTACAGCACACGCGAATGTCTCCGAGACGCCCGGTAAGGC
GTTCGTTCGGGCTGTTTCAGCGGCGGGGTTGTTCGGTGGCTGTCTTTACA
CTACATCAAACCCTTATTCTTTTTTTTCTTCGTATGTACCCAGCGACAAC
GACAACACACCTACCTGTTACGGGGTAGCATGGTAAATAGGACCAAATAC
GCTTGGCAAGAATAGTGTATTATATAGGTTTTTGTGTATATCGTGGGTCC
TACTGAAGTATTTACTACGGTCCCCCCGTAACAGTGTCCGTACTGACTAT
TCATCCCTGGGAGAGACTACAAAATGTTATCGTAACAGACACTGCGCGAC
CGAGAAAACCAAAAGAAAACCAAAACCACCTCGAACGAACCGAGTTACAA
AAAAAAAAGGCGGTAAAAACAAGAACACACCACGGGCTTTCAGGAATTTA
CGAACACGTGCCTTGGCATCAGGTATGTCTTGTTTCGGCTCCTGTGGCGG
GCTATAACACGTACGTTAAATGTCTGAGCCAAGCGCAGCAAAACAAATCG
CGCACGCTGTCTGACAACACGATATGTATATATTTCATAAACGAAGGTTT
TAAGTTTGTTTTTTTAGAGATGGACGCCACTTTTAAACGAAACCTTACTT
GCAAGGTAGCCCAACCTGACCTCCCCTCCACACTCGCCTCGTGGAAAAAC
CCAAGCCCTACCCTGCGAAGTACCGCACCCTGATCAACCCCTCCACACCC
GCCTCGTGAACACCCAAACCTTCCAGGCACCACACCCTGATCCCCCCTCC
ACACTCGCCTCGTGCAGACCCAAACCCTCTTCATGGAACATACCGTACCC
TGACCCCTCCCCCACACCCGCCTCGTGCAAACCCAAACCCTTATCATGGC
ACATTCCGCACCCTGACCCCCTCCCCCACACCCGCCTCGTGCAAACCCAA
ACCCTTAATATGGTACATTCCGCACCCTGATCCCCCCTCCACACTCGCCT
CGTGCAAACCCAAACCCTCTTCATGGAACATACCGTACCCTGACCCCCCC
CCCACACCCGCCTCGTGCAAACCCAAACCCTTACCATGGCACATTCCGCA
CCCTGACCCCCCCCACCACACCCGCCTCGTGCAAACCCAAACCCTTATCA
TGGAACATTCCGCACCCTGACCCCCCCTCCACACTCTCCTCGTGCAAACC
CAAATCCTACCCTGCAAGGTACCGCACCCTGATGGCGTACGAAAATGGCT
GCTCGGCCGCGCCAAGGATGAACATTTTTTCCACCCCGGACAAGAGTTAC
GCGGGACAGCCGCAGGGGACGGACACCGCAAACAACGCGCGCGTCCTGAA
CGAGGCTATGGTAAGCTGCGCACTACGAGGATGA

Coding sequence (CDS) from alignment at L-digitata_M_contig10134:876..8609-

>mRNA_L-digitata_M_contig10134.1.1 ID=mRNA_L-digitata_M_contig10134.1.1|Name=mRNA_L-digitata_M_contig10134.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=678bp|location=Sequence derived from alignment at L-digitata_M_contig10134:876..8609- (Laminaria digitata LdigPH10_18mv male)
ATGGTGCTCTACACGAAGAAGGCGATGCTCGAGTCCAACTCCATGGACGG
AGCAGTGCGCACGACCGATCAGATGGAAAGCGCCATCAGCGCCGCCTACG
AGGGGGCTAACAACGCCCTGGACAGCTCAGGGGTTGGCTTCACGCTCAGG
GTGGTCTACATGGCGCAGGTAGACTACACGGAAACGAGCGAGATCTCGGA
CGCGGTGTACGCCCTTCAGGGCGGCGATCACGAAGAGCTTCTCGACGTAC
ACGCGCTGCGGGACGAGTACGGTGCCGACCTCGTGCAGCTCGTCGGTTTC
TACCTTAACACATGCGGCATCGGGTTCACCATGCAATCCCCTACATCTGC
CTTCGATGGCTACGGCTATTCCGTTGTGCACGCGAACTGCCTGTCGAACT
ACTCCCACATTCACGAAATCGGCCACAACATGGGCGCCAACCACAACAAG
GAAAACTCGCACTCAGACCACGCCTACGCCTACGCGTGGCGCTACTGCGA
CGGGGACATCCCGTACCGCACCCTGATGGCGTACGAAAATGGCTGCTCGG
CCGCGCCAAGGATGAACATTTTTTCCACCCCGGACAAGAGTTACGCGGGA
CAGCCGCAGGGGACGGACACCGCAAACAACGCGCGCGTCCTGAACGAGGC
TATGGTAAGCTGCGCACTACGAGGATGA