mRNA_L-digitata_M_contig101334.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101334.1.1
Unique NamemRNA_L-digitata_M_contig101334.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101334.1.1 vs. uniprot
Match: A0A6H5KN32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN32_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.130e-8
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 IGGATRLAAGGVSIMEIQRQGRWKSDAFMMYVRATREEEDKVLRVLASN 147
            IGGAT+LA  G S+++IQR GRWKS AFM YVRA  +  + V R LAS+
Sbjct:   69 IGGATQLAKQGASVVQIQRAGRWKSGAFMTYVRAGGDGANCVSRALASS 117
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BLAST of mRNA_L-digitata_M_contig101334.1.1 vs. uniprot
Match: A0A6H5K8A0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8A0_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 9.410e-7
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 IGGATRLAAGGVSIMEIQRQGRWKSDAFMMYVRATRE 111
            IGGAT LA+ G S+++IQR GRWKS AFM+YVRA  E
Sbjct:  156 IGGATHLASMGASVIQIQRAGRWKSSAFMVYVRAGGE 192
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BLAST of mRNA_L-digitata_M_contig101334.1.1 vs. uniprot
Match: A0A6H5KCI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI7_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 5.610e-6
Identity = 29/59 (49.15%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:    1 IGGATRLAAGG-VSIMEIQRQGRWKSDAFMMYVRATREEEDKVLRVLASNAVAGGIQPG 174
            IGGA+ LAAGG VS   IQR+GRWKSDA+ +Y     E+  +V R L         QPG
Sbjct:  393 IGGASTLAAGGAVSERVIQREGRWKSDAYKVYTVNNSEDSQRVSRTLGDKDKGVARQPG 451
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BLAST of mRNA_L-digitata_M_contig101334.1.1 vs. uniprot
Match: A0A6H5K312_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K312_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 7.740e-6
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 IGGATRLAAGGVSIMEIQRQGRWKSDAFMMYVRATRE 111
            IGGAT LA+ G S+++IQR GRWK  AFM+YVRA  E
Sbjct:  605 IGGATHLASMGASVIQIQRAGRWKPSAFMVYVRAGGE 641
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BLAST of mRNA_L-digitata_M_contig101334.1.1 vs. uniprot
Match: A0A6H5JRM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRM8_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 8.860e-6
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 IGGATRLAAGGVSIMEIQRQGRWKSDAFMMYVRATRE 111
            IGG T LA  G S+++IQR GRWKS AFM+YVRA  E
Sbjct:  200 IGGGTHLAIMGASVIQIQRAGRWKSSAFMVYVRAGGE 236
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BLAST of mRNA_L-digitata_M_contig101334.1.1 vs. uniprot
Match: A0A6H5KDK3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK3_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 1.040e-5
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    1 IGGATRLAAGGVSIMEIQRQGRWKSDAFMMYVRATREEEDK-VLRVLA 141
            IG AT++AA G+S ++IQ  GRWKS AFM+YVR T  E  K V R LA
Sbjct:  289 IGAATQMAAQGLSALQIQHAGRWKSQAFMVYVRDTGAEGAKEVSRALA 336
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101334.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KN32_9PHAE1.130e-859.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8A0_9PHAE9.410e-767.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCI7_9PHAE5.610e-649.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K312_9PHAE7.740e-664.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRM8_9PHAE8.860e-664.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDK3_9PHAE1.040e-558.33Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101334contigL-digitata_M_contig101334:1..174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size174
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size174
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406617.8028457-CDS-L-digitata_M_contig101334:0..1741682406617.8028457-CDS-L-digitata_M_contig101334:0..174Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101334 1..174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101334.1.1prot_L-digitata_M_contig101334.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101334 1..174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101334.1.1

>prot_L-digitata_M_contig101334.1.1 ID=prot_L-digitata_M_contig101334.1.1|Name=mRNA_L-digitata_M_contig101334.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=58bp
IGGATRLAAGGVSIMEIQRQGRWKSDAFMMYVRATREEEDKVLRVLASNA
VAGGIQPG
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mRNA from alignment at L-digitata_M_contig101334:1..174+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101334.1.1 ID=mRNA_L-digitata_M_contig101334.1.1|Name=mRNA_L-digitata_M_contig101334.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=174bp|location=Sequence derived from alignment at L-digitata_M_contig101334:1..174+ (Laminaria digitata LdigPH10_18mv male)
ATTGGGGGAGCAACGAGACTTGCAGCAGGAGGGGTGTCGATAATGGAAAT
CCAACGTCAGGGGAGGTGGAAGAGCGATGCCTTTATGATGTACGTAAGAG
CGACAAGAGAGGAGGAGGATAAGGTTTTAAGAGTTTTAGCTTCTAATGCA
GTGGCCGGAGGAATTCAGCCAGGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig101334:1..174+

>mRNA_L-digitata_M_contig101334.1.1 ID=mRNA_L-digitata_M_contig101334.1.1|Name=mRNA_L-digitata_M_contig101334.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=174bp|location=Sequence derived from alignment at L-digitata_M_contig101334:1..174+ (Laminaria digitata LdigPH10_18mv male)
ATTGGGGGAGCAACGAGACTTGCAGCAGGAGGGGTGTCGATAATGGAAAT
CCAACGTCAGGGGAGGTGGAAGAGCGATGCCTTTATGATGTACGTAAGAG
CGACAAGAGAGGAGGAGGATAAGGTTTTAAGAGTTTTAGCTTCTAATGCA
GTGGCCGGAGGAATTCAGCCAGGA
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