mRNA_L-digitata_M_contig10132.4.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10132.4.1
Unique NamemRNA_L-digitata_M_contig10132.4.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10132.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10132contigL-digitata_M_contig10132:5453..5990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size538
Hectar predicted targeting categorymitochondrion
Exons1
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406617.6338897-UTR-L-digitata_M_contig10132:5452..55571682406617.6338897-UTR-L-digitata_M_contig10132:5452..5557Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig10132 5453..5557 -
1682406617.6548786-UTR-L-digitata_M_contig10132:5902..59901682406617.6548786-UTR-L-digitata_M_contig10132:5902..5990Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig10132 5903..5990 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406617.6431959-CDS-L-digitata_M_contig10132:5557..59021682406617.6431959-CDS-L-digitata_M_contig10132:5557..5902Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10132 5558..5902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10132.4.1prot_L-digitata_M_contig10132.4.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10132 5558..5902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10132.4.1

>prot_L-digitata_M_contig10132.4.1 ID=prot_L-digitata_M_contig10132.4.1|Name=mRNA_L-digitata_M_contig10132.4.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=115bp
MWIHTRSPSPGWYRLISRKLKVTRGSSLRSVKTRGTDPPRCVLHTKPVQE
RTCQGLRLTTTNYNYSYNYNRVRTMFLFLMPSDNVQGECPSQKQMAEETL
KQPKINDDQLNNLP*
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mRNA from alignment at L-digitata_M_contig10132:5453..5990-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10132.4.1 ID=mRNA_L-digitata_M_contig10132.4.1|Name=mRNA_L-digitata_M_contig10132.4.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=538bp|location=Sequence derived from alignment at L-digitata_M_contig10132:5453..5990- (Laminaria digitata LdigPH10_18mv male)
TGGCCCTGTTACCCCAAGTCGACATATTTTTCTTTTATGACGCGCAGTTG
CACGTCTCAAAAAAGAGGGGGTAAAAAAGAGGGGGGTGATGTGGATACAT
ACCAGGTCCCCTTCCCCTGGATGGTACCGCCTCATTTCACGCAAGTTGAA
GGTCACCAGAGGTTCCTCACTCCGTTCCGTGAAGACCCGAGGCACCGACC
CACCTCGGTGTGTCCTCCACACCAAACCCGTACAAGAGAGAACCTGCCAG
GGGCTCCGCCTCACAACAACAAACTACAACTACAGCTACAACTACAACCG
GGTACGTACTATGTTCTTATTTCTTATGCCATCTGACAATGTACAGGGTG
AGTGCCCATCACAAAAACAAATGGCGGAAGAAACCTTGAAGCAACCGAAA
ATAAATGACGACCAACTAAACAACCTGCCGTAGAGTCGTCTAGTAAGGCA
GCCCACAACTACTTGGTGAACCAAAAACAACAAGCTTCTTAGAACCAACA
TCCTGATTTCTGCCGCTGCCCCTACCAAACTAGAACCC
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Coding sequence (CDS) from alignment at L-digitata_M_contig10132:5453..5990-

>mRNA_L-digitata_M_contig10132.4.1 ID=mRNA_L-digitata_M_contig10132.4.1|Name=mRNA_L-digitata_M_contig10132.4.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=345bp|location=Sequence derived from alignment at L-digitata_M_contig10132:5453..5990- (Laminaria digitata LdigPH10_18mv male)
ATGTGGATACATACCAGGTCCCCTTCCCCTGGATGGTACCGCCTCATTTC
ACGCAAGTTGAAGGTCACCAGAGGTTCCTCACTCCGTTCCGTGAAGACCC
GAGGCACCGACCCACCTCGGTGTGTCCTCCACACCAAACCCGTACAAGAG
AGAACCTGCCAGGGGCTCCGCCTCACAACAACAAACTACAACTACAGCTA
CAACTACAACCGGGTACGTACTATGTTCTTATTTCTTATGCCATCTGACA
ATGTACAGGGTGAGTGCCCATCACAAAAACAAATGGCGGAAGAAACCTTG
AAGCAACCGAAAATAAATGACGACCAACTAAACAACCTGCCGTAG
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