mRNA_L-digitata_M_contig10130.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig10130.2.1 vs. uniprot
Match: D7G6A8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6A8_ECTSI) HSP 1 Score: 575 bits (1483), Expect = 2.350e-204 Identity = 293/371 (78.98%), Postives = 322/371 (86.79%), Query Frame = 1
Query: 1 TSTYLFALMSERMLLVQWTSDFESPGPNDEDGGNASTXXXXXGSPDRTSSLEEIFLDPGFFWSWERFEDRWTNYFGFSEEDLVATNVDVIENYNNLVCADLKKSFMKDTQFIKIINTDYFAPILTVNQHSSNKVLEEISSVDTFASLSNWLMRPVPTVTAAVRRFKERYFEDNYVIVMEMNLVADSSYGSAMQAAQQQLFFKEASDASYRAKGNLTPEQQGIVVLVVTDDEEAVRSRLSDLGQDSFGAAGVVAITGPRGSGTTRILTELQQAWLLGYGDVSIVSPASATGVLGHARMSLLPIVIVDSHTAHQSTSSQPCLADVGLIQQASCFSPGMLSRLSYDANVPCLGSPPATVTSSDAARGRMRRLEL 1113
TSTYLFALMSER+LLVQWT ES G ND GN++T G+ TSSLEEIFLDPGFFWSWERFEDRW NYFG++EEDL +T VDVI NYN+LVC +LK +FM DTQFIKI NT+YFAP+LTVNQH+S VLEEI SVDTFASLSNWLMRPVPTVTAAVRRF+ERY EDNYVIVMEM+++ADS+ GS M AAQQQLFFKEASDASYRAKGNLTP+QQGIVVLVVTDDEE ++SR++DLGQDS GAAGVVAITGPRG GTTRILTELQQAWLLGYGDVSIVSPAS GVLGHARMS+ PIVI+DSHTAHQSTSSQPCLAD+G +Q+ASCFS MLSRLSYD NVPCLG PP TV S +AAR R R L L
Sbjct: 24 TSTYLFALMSERVLLVQWTGSDESQGSNDIAAGNSTTAGESSGTSGSTSSLEEIFLDPGFFWSWERFEDRWLNYFGYAEEDLGSTVVDVIANYNSLVCDNLK-NFMGDTQFIKITNTEYFAPLLTVNQHASRTVLEEIPSVDTFASLSNWLMRPVPTVTAAVRRFRERYLEDNYVIVMEMDVLADSTGGSGMSAAQQQLFFKEASDASYRAKGNLTPDQQGIVVLVVTDDEEGLQSRVADLGQDSLGAAGVVAITGPRGFGTTRILTELQQAWLLGYGDVSIVSPASPIGVLGHARMSVSPIVILDSHTAHQSTSSQPCLADIGRVQEASCFSSAMLSRLSYDPNVPCLGDPPTTVNSCNAARDRARNLRL 393
BLAST of mRNA_L-digitata_M_contig10130.2.1 vs. uniprot
Match: A0A6H5JJN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJN7_9PHAE) HSP 1 Score: 557 bits (1436), Expect = 2.290e-195 Identity = 293/373 (78.55%), Postives = 321/373 (86.06%), Query Frame = 1
Query: 1 TSTYLFALMSERMLLVQWTSDFESPGPNDEDGGNASTXXXXXGSPDRTSSLEEIFLDPGFFWSWERFEDRWTNYFGFSEEDLVATNVDVIENYNNLVCADLKKSFMKDTQFIKIINTDYFAPILTVNQHSSNKVLEEISSVDTFASLSNWLMRPVPTVTAAVRRFKERYFEDNYVIVMEMNLVADSSYGSAMQAAQQQLFFKEASDASYRAKGNLTPEQQGIVVLVVTDDEEAVRSRLSDLGQDSFGAAGVVAITGPRGSGTTRILTELQQAWLLGYGDVSIVSPASATGVLGHARMSLLPIVIVDSHTAHQSTSSQPCLADVGLIQQASCFSPGMLSRLSYDANVPCLGSPPATVTSSDAARGRMR--RLEL 1113
TSTYLFALMSER+LLVQWT +S G XXXXXG+ TSSLEEIFLDPGFFWSWERFEDRW NYFG++EEDL +T VDVI NYN+LVC +LK +FM DTQFIKI NT+YFAP+LTVNQH+ VLEEI SVDTFASLSNWLMRPVPTVTAAVRRF+ERYFEDNYVIVMEM+++AD++ GS M AAQQQLFFKEASDASYRAKGNLTP+QQG+VVLVVTDDEE ++SR++DLGQDS GAAGVVAITGPRG GTTRILTELQQAWLLGYGDVSIVSPAS GVLGHARMS+ PIVIVDSHTAHQSTSSQPCLADVG +Q+A CFS MLSRLSYD NVPCLG PP TV SS+ AR R R RLEL
Sbjct: 143 TSTYLFALMSERVLLVQWTGSDDSQGXXXXXXXXXXXXXXXXGTSGSTSSLEEIFLDPGFFWSWERFEDRWLNYFGYAEEDLGSTVVDVIANYNSLVCDNLK-NFMGDTQFIKITNTEYFAPLLTVNQHAGRTVLEEIPSVDTFASLSNWLMRPVPTVTAAVRRFRERYFEDNYVIVMEMDVLADTTGGSGMSAAQQQLFFKEASDASYRAKGNLTPDQQGVVVLVVTDDEEGLQSRVADLGQDSLGAAGVVAITGPRGFGTTRILTELQQAWLLGYGDVSIVSPASPIGVLGHARMSVSPIVIVDSHTAHQSTSSQPCLADVGRVQEARCFSSAMLSRLSYDPNVPCLGDPPRTVKSSNEARDRARNRRLEL 514
BLAST of mRNA_L-digitata_M_contig10130.2.1 vs. uniprot
Match: A0A835YLY2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY2_9STRA) HSP 1 Score: 348 bits (892), Expect = 1.570e-113 Identity = 187/356 (52.53%), Postives = 238/356 (66.85%), Query Frame = 1
Query: 1 TSTYLFALMSERMLLVQWTSDFESPGPNDEDGGNASTXXXXXGSP----DRTSSLEEIFLDPGFFWSWERFEDRWTNYF--GFSEEDLVATNVDVIENYNNLVCADLKKSFMKDTQFIKIINTDYFAPILTVNQHSSNKVLEEISSVDTFASLSNWLMRPVPTVTAAVRRFKERYFEDNYVIVMEMNLVADSSYGSAMQAAQQQLFFKEASDASYRAKGNLTPEQQGIVVLVVTDDEEAVRSRLSDLGQDSFGAAGVVAITGPRGSGTTRILTELQQAWLLGYGDVSIVSPASATGVLGHARMSLLPIVIV-DSHTAHQSTSSQPCLADVGLIQQASCFSPGMLSRLSYDANVPCL 1047
TS +L A++S R LLVQWT D+E+PGP+D GG + +R SSLEEIFLDPGF+WSW+RF RWT F +E D+V NV L C DL++ ++D QF+K+ YFAP L VN ++ + ++ FA LSNWL+RPVPTV AV RF ERYFEDNYVI +EM+L M AAQQ+ FF+EA+DA+YRA T +G+++LVVTDDEEA+R+RL QD+ GAAG++AITGPRG+GT RILTELQ+ WLLGY DV IVSPAS TGV+GHAR PIV+ D AH S ++QPC AD+ ++ ASCF P ML++LS D VPC+
Sbjct: 29 TSAFLLAMLSGRALLVQWTKDYEAPGPSDIGGGAGDWDYGANATAVPHDERRSSLEEIFLDPGFWWSWDRFMGRWTGRFERAAAEIDIVVVNVSA--EVEALACGDLRRWRVRD-QFVKVAGAHYFAPALAVNARHADALFAQLPRDQLFAYLSNWLLRPVPTVMTAVHRFAERYFEDNYVIGLEMSLWQALGEWGTMTAAQQKRFFQEAADATYRA----TQALRGVMILVVTDDEEALRARLKGQPQDALGAAGIIAITGPRGTGTRRILTELQEVWLLGYADVCIVSPASPTGVVGHARTGRAPIVVAADGGAAHASAATQPCFADLAALRAASCFRPDMLAQLSIDPEVPCV 377
BLAST of mRNA_L-digitata_M_contig10130.2.1 vs. uniprot
Match: A0A7S2RPW9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RPW9_9STRA) HSP 1 Score: 184 bits (466), Expect = 2.660e-49 Identity = 125/363 (34.44%), Postives = 195/363 (53.72%), Query Frame = 1
Query: 4 STYLFALMSERMLLVQWTSDFESPGPNDEDGGNASTXXXXXGSPDRTSSLEEIFLDPGFFWSWERFEDRWTNYFGFS------EEDLVATNVDVIENYNNLVCADLKKSFMKDTQFIKIINTDYFAPILTVNQHSSNKVLEEISSVDTFASLSNWLMRPVPTVTAAVRRFKERYFEDNYVIVMEMNLV-ADSSYGSA--MQAAQQQLFFKEASD-ASYRAKGNLTPEQQGIVVLVVTDDEEAVRSRLSDLGQDS-FGAAGVVAITGPRGSGTTRILTELQQAWLLGYGDVSIVSPASATGVLGHARMSLLPIVIVDSHTAHQSTSSQPCLADVGLIQQASCFSPGMLSRLSYDANVPCLGSPP 1059
S + A++++R LLVQWTS + +P N S+ + DR L ++ PGF W+++ F + G + +V+ ++++ L C+++ + + +F+++ +YF P+L VN + S V EE+ + FA L N+L+RP P + ++ R K RY E N VI +EM ++ S+ A M QQ+ FF AS S A L QG+V L VTD+ V++R +L S +AGV+AI G+G +R+ ELQ+ +LLG+ V + +P S G++GHAR L P+V VD T HQST+ PC + LI++ +CF ML +L D VPC GS P
Sbjct: 218 SCFFLAMVTDRALLVQWTSSWTTPADVSAIPRNGSS------ASDRRVGLNDVLTAPGFSWNYDAFATAYRGTTGAFPALVPWDPLMVSAGGELVDAIEPLTCSNVA-TLLAPHKFVQVRTQEYFLPLLLVNPYYSY-VDEELPAQWAFADLMNFLIRPTPDIVDSIERVKIRYLEGNAVIGLEMAVMPGGGSWDGAGLMPLEQQRRFFSTASSLVSQDAISTLNTAGQGVVFLFVTDNPGEVQARFRELDSSSEVTSAGVIAILAVSGAGRSRVQLELQELFLLGHSTVLLTTPGSLLGIIGHARTRLSPLV-VDEDTVHQSTAPYPCFVNWDLIERTTCFHSSMLYKLPPDELVPC-GSLP 570
BLAST of mRNA_L-digitata_M_contig10130.2.1 vs. uniprot
Match: A0A7S2UWL4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWL4_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 6.570e-6 Identity = 35/123 (28.46%), Postives = 62/123 (50.41%), Query Frame = 1
Query: 157 EIFLDPGFFWSWERFEDRWTNYFGFSEEDLVATNVDVIENYNNLVCADLKKSFMKDTQFIKIINTD-------YFAPILTVNQHSSNKVLEEISSVDTFASLSNWLMRPVPTVTAAVRRFKER 504
E+F PGF W W ++ G + +D + + + +C+DL+ ++ ++ +++ YFA ++ N + + EE+ FA LSN+L+RP+P VT AV RF+ER
Sbjct: 1 ELFEPPGFAWEWAALQEA----LGEEGDLSKIPTLDPVAQFQSTICSDLR-TWDSGSKVVRLSTNSADGGPHQYFAALIAANPVFTF-LQEELPYDQLFALLSNFLLRPLPVVTYAVSRFRER 117 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10130.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig10130.2.1 >prot_L-digitata_M_contig10130.2.1 ID=prot_L-digitata_M_contig10130.2.1|Name=mRNA_L-digitata_M_contig10130.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=364bp MSERMLLVQWTSDFESPGPNDEDGGNASTGGDASGSPDRTSSLEEIFLDPback to top mRNA from alignment at L-digitata_M_contig10130:3865..8235- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig10130.2.1 ID=mRNA_L-digitata_M_contig10130.2.1|Name=mRNA_L-digitata_M_contig10130.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=4371bp|location=Sequence derived from alignment at L-digitata_M_contig10130:3865..8235- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig10130:3865..8235- >mRNA_L-digitata_M_contig10130.2.1 ID=mRNA_L-digitata_M_contig10130.2.1|Name=mRNA_L-digitata_M_contig10130.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=1092bp|location=Sequence derived from alignment at L-digitata_M_contig10130:3865..8235- (Laminaria digitata LdigPH10_18mv male)back to top |