mRNA_L-digitata_M_contig1013.6.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig1013.6.1
Unique NamemRNA_L-digitata_M_contig1013.6.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig1013.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig1013contigL-digitata_M_contig1013:21711..22433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size723
Hectar predicted targeting categoryother localisation
Exons1
Cds size408
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406616.9359293-UTR-L-digitata_M_contig1013:21710..218481682406616.9359293-UTR-L-digitata_M_contig1013:21710..21848Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig1013 21711..21848 -
1682406616.9553185-UTR-L-digitata_M_contig1013:22256..224331682406616.9553185-UTR-L-digitata_M_contig1013:22256..22433Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig1013 22257..22433 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406616.945872-CDS-L-digitata_M_contig1013:21848..222561682406616.945872-CDS-L-digitata_M_contig1013:21848..22256Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1013 21849..22256 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig1013.6.1prot_L-digitata_M_contig1013.6.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig1013 21849..22256 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig1013.6.1

>prot_L-digitata_M_contig1013.6.1 ID=prot_L-digitata_M_contig1013.6.1|Name=mRNA_L-digitata_M_contig1013.6.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=136bp
MSSTKSSSSTLGSPAKGGKPSRSKTPKPKKISTKGLRKTSHLEMLVGTQR
LCCESRLCAARTTPIRGGDNKCLRSAKVTSACRCIPCSKVGGVVMCRDCY
HDRKKHLSALQYAVSPRKDGTPRDRPELKFRKKAQ*
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mRNA from alignment at L-digitata_M_contig1013:21711..22433-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig1013.6.1 ID=mRNA_L-digitata_M_contig1013.6.1|Name=mRNA_L-digitata_M_contig1013.6.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=723bp|location=Sequence derived from alignment at L-digitata_M_contig1013:21711..22433- (Laminaria digitata LdigPH10_18mv male)
CAGCACCGCATCTGTTGCATGCGCTGTGAGGCTGAGGACTGAGCCACGGC
GGGAAATCCGCACTACGGTGCATTGGGTATCTTCAGTCGCGACTGTGTGG
ACTTGCGAACGTTGAAGTTGGATACACTTGGCAAGCAGACGAGATCCCAG
TGGCTCAGGACCCTGAGTATATTGCTCATGTCCAGCACTAAGAGCAGTAG
TAGTACCCTGGGTAGCCCGGCGAAGGGGGGTAAGCCAAGCCGGTCAAAAA
CCCCAAAGCCCAAGAAGATCAGCACCAAGGGGCTCCGGAAAACTAGCCAC
CTTGAGATGCTTGTGGGGACCCAACGGCTTTGTTGCGAATCTAGGCTTTG
CGCCGCCCGCACTACCCCAATCCGCGGAGGGGACAACAAGTGTCTCCGCA
GCGCGAAGGTTACGAGCGCTTGCAGATGCATCCCTTGCTCCAAGGTCGGT
GGCGTTGTGATGTGCAGAGACTGCTATCACGACAGGAAGAAGCACCTGTC
GGCATTACAGTATGCGGTGTCACCAAGGAAAGACGGCACACCCAGGGACC
GGCCCGAGCTCAAGTTCCGTAAGAAGGCGCAATAACTCCCCTGACGTGCG
ATTTTTTTTTGTTCGTTTTACCCTGCCGGTACTTGTATGAAGAAAGTGAT
GGCATCGTCTGTCGTTTATCGTTTATCGTCGTGTTTTGTTTTTTTGGGGG
TGCGTTCGACCAGGTTCGACGAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig1013:21711..22433-

>mRNA_L-digitata_M_contig1013.6.1 ID=mRNA_L-digitata_M_contig1013.6.1|Name=mRNA_L-digitata_M_contig1013.6.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=408bp|location=Sequence derived from alignment at L-digitata_M_contig1013:21711..22433- (Laminaria digitata LdigPH10_18mv male)
ATGTCCAGCACTAAGAGCAGTAGTAGTACCCTGGGTAGCCCGGCGAAGGG
GGGTAAGCCAAGCCGGTCAAAAACCCCAAAGCCCAAGAAGATCAGCACCA
AGGGGCTCCGGAAAACTAGCCACCTTGAGATGCTTGTGGGGACCCAACGG
CTTTGTTGCGAATCTAGGCTTTGCGCCGCCCGCACTACCCCAATCCGCGG
AGGGGACAACAAGTGTCTCCGCAGCGCGAAGGTTACGAGCGCTTGCAGAT
GCATCCCTTGCTCCAAGGTCGGTGGCGTTGTGATGTGCAGAGACTGCTAT
CACGACAGGAAGAAGCACCTGTCGGCATTACAGTATGCGGTGTCACCAAG
GAAAGACGGCACACCCAGGGACCGGCCCGAGCTCAAGTTCCGTAAGAAGG
CGCAATAA
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