mRNA_L-digitata_M_contig10128.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10128.1.1
Unique NamemRNA_L-digitata_M_contig10128.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig10128.1.1 vs. uniprot
Match: D8LPP7_ECTSI (Rhomboid domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP7_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 5.470e-89
Identity = 132/197 (67.01%), Postives = 163/197 (82.74%), Query Frame = 1
Query:    1 AGAPVSKALSIMTALATCFVLSNKSQHMVSLIGYRVFGEASQWWRVFTSLLPLASMWELLLCLHVIRVFRVLERQMGSAKFGSFLFLAAVLTKTAELAFCVRFPLFRPPIGPLALLSALATTYYGYIPFSAPAYFTIGDMRVTEKFFLYLAVLVLAFVEPWSSVVSAACGVVVALLYWSKHSPLQRFRVPGRRLFAV 591
            AGAPVSK+L+I+TA++T  VL N SQ   +LIG RVFG+  QWWR+ TS+ PL S+WEL+LCL++IRVFR+LER +GSAKFGSFLFLAA+L+K+ ELA CV FP+FRPP+GPL +LSA+   YYGYIP +APAY TIG++RVT KFF Y AVLVLAF + ++S +SA CGVVVA LYWS  SPLQ FR+PGR+LFAV
Sbjct:    7 AGAPVSKSLAIITAVSTLVVLQNNSQDTAALIGVRVFGDDGQWWRLLTSMFPLGSVWELILCLNIIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFPVFRPPLGPLPILSAVGVAYYGYIPSTAPAYLTIGNVRVTGKFFAYAAVLVLAFHDTYNSAMSAGCGVVVAFLYWSNRSPLQSFRIPGRQLFAV 203          
BLAST of mRNA_L-digitata_M_contig10128.1.1 vs. uniprot
Match: A0A6H5L6R3_9PHAE (UBA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R3_9PHAE)

HSP 1 Score: 268 bits (686), Expect = 3.510e-87
Identity = 131/197 (66.50%), Postives = 163/197 (82.74%), Query Frame = 1
Query:    1 AGAPVSKALSIMTALATCFVLSNKSQHMVSLIGYRVFGEASQWWRVFTSLLPLASMWELLLCLHVIRVFRVLERQMGSAKFGSFLFLAAVLTKTAELAFCVRFPLFRPPIGPLALLSALATTYYGYIPFSAPAYFTIGDMRVTEKFFLYLAVLVLAFVEPWSSVVSAACGVVVALLYWSKHSPLQRFRVPGRRLFAV 591
            AGAPVSK+L+I+TA++T  VL N SQ   +LIG RVFG+  QWWR+ TS+ PL S+WEL+LCL++IRVFR+LER +GSAKFGSFLFLAA+L+K+ ELA CV FP FRPP+GPL +LSA+   YYGYIP +APAY T+G++RVT KFF Y AVLVLAF + ++S +SA CGVVVALLYWS  SPLQ FR+PGR+LFA+
Sbjct:    7 AGAPVSKSLAIVTAVSTLVVLQNNSQDTAALIGIRVFGDDGQWWRLLTSMFPLGSVWELILCLNIIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFPFFRPPLGPLPILSAVGVAYYGYIPSTAPAYLTVGNVRVTGKFFAYAAVLVLAFHDTYNSAMSAGCGVVVALLYWSHLSPLQSFRIPGRQLFAI 203          
BLAST of mRNA_L-digitata_M_contig10128.1.1 vs. uniprot
Match: A0A024UD62_9STRA (UBA domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UD62_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 6.420e-17
Identity = 68/188 (36.17%), Postives = 103/188 (54.79%), Query Frame = 1
Query:   10 PVSKALSIMTALATCFVLSNKSQHMVSLIGYRVFGEASQWWRVFTSLLPLASMWELLLCLHVIRVFRVLERQMGSAKFGSFLFLAAVLTKTAELAFCVRFPLFRPPIGPLALLSALATTYYGYIPFSAPAYFTIGDMRVTEKFFLYLAVLVLAFVEPWSSVVSAACGVVVALLYWSKHSPLQRFRVPG 573
            PV+ A    T +A+   L    +H ++L    V  + SQ+WR+ T    L +   +   ++V+  FRV+ERQ GS KFG+F+ L  +LT TA L   ++ P    P GP  L+ ALA  YY  +P   P  +++  + VT+K  +Y  +L L  +  +S+    A GV+V LLY SK+ PL + RVPG
Sbjct:   12 PVTYAYLSATGMASVAALFMDMRHQLTLDLVSVT-KLSQYWRLLTCHFALDNGIAVAFGMYVLFQFRVIERQFGSNKFGTFIILV-LLTSTA-LQVWLKLP--TTP-GPYPLIGALAVIYYHNVPLLQPRLYSLLGLNVTDKSSIY-GLLSLVCLRSYSTAFPFATGVLVGLLYQSKYLPLSKLRVPG 192          
BLAST of mRNA_L-digitata_M_contig10128.1.1 vs. uniprot
Match: A0A2D4C2S4_PYTIN (UBA domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2S4_PYTIN)

HSP 1 Score: 78.6 bits (192), Expect = 1.270e-13
Identity = 60/192 (31.25%), Postives = 98/192 (51.04%), Query Frame = 1
Query:    4 GAPVSKALSIMTALATCFVLSNKSQHMVSLIGYRVFGEASQWWRVFTSLLPLASMWELLLCLHVIRVFRVLERQMGSAKFGSFLFLAAVLTKTAELAFCVRFPLF--RPPIGPLALLSALATTYYGYIPFSAPAYFTIGDMRVTEKFFLYLAVLVLAFVEPWSSVVSAACGVVVALLYWSKHSPLQRFRVPG 573
            GAPV+ A S+    A+   L    +   SL+G        Q+WR+++S L           L++I  FRVLERQMGS KFGS +F    ++   +LA  +  P    R P GP ALL AL   +  ++P   P  ++I  +  ++K   Y+ +  +   +P   ++S   G+++ +L+ S  +PL + R+PG
Sbjct:   10 GAPVTYAASLAIGAASSATLLFDMEGPFSLLGRDAVVRRGQYWRLWSSQLAFHHGLAASFGLYIIFQFRVLERQMGSRKFGSLVFFIWTISALLKLAALLSMPSLARRXPPGPYALLGALTVFFMKFVPRLHPKAYSIVGINFSDKSSTYVLMAAILLHDP-RKLLSYIPGMLLGVLFSS--TPLSKLRLPG 198          
BLAST of mRNA_L-digitata_M_contig10128.1.1 vs. uniprot
Match: A0A1V9Z9J1_9STRA (UBA domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z9J1_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.470e-12
Identity = 55/177 (31.07%), Postives = 91/177 (51.41%), Query Frame = 1
Query:   91 LIGYRVFGEASQWWRVFTSLLPLASMWELLLCLHVIRVFRVLERQMGSAKFGSFLFLAAVLTKTAELAFCVRFPLFRPPI--GPLALLSALATTYYGYIPFSA--------------PAYFTIGDMRVTEKFFLYLAVLVLAFVEPWSSVVSAACGVVVALLYWSKHSPLQRFRVPG 573
            ++  ++    SQ+WR+ T  L   +   +   +++I   RV+ERQ GS KFGSF+FL  VL+   ++  C++  +  P I  GP A++ AL   ++G + FS+              PA F+   +  +EK   Y  ++ L  +    + +  + G +V LLY SK  PL RFR+PG
Sbjct:   54 IVDLKMMSRHSQYWRLITCHLGFQNGMAVAFGIYLIFNCRVIERQFGSKKFGSFMFLVLVLSTLLQIV-CLKAKVV-PTIASGPYAVIGALMVVFFGTLSFSSHFTVASIGNVPKLQPALFSAMGLNFSEKSSTYF-MMCLVCLRSVDAALPFSTGALVGLLYQSKRLPLARFRLPG 227          
BLAST of mRNA_L-digitata_M_contig10128.1.1 vs. uniprot
Match: A0A6G0XD48_9STRA (UBA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XD48_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.740e-12
Identity = 57/190 (30.00%), Postives = 98/190 (51.58%), Query Frame = 1
Query:    7 APVSKALSIMTALATCFVL-SNKSQHMVSLIGYRVFGEASQWWRVFTSLLPLASMWELLLCLHVIRVFRVLERQMGSAKFGSFLFLAAVLTKTAELAFCVRFPLFRPPIGPLALLSALATTYYGYIPFSAPAYFTIGDMRVTEKFFLYLAVLVLAFVEPWSSVVSAACGVVVALLYWSKHSPLQRFRVPG 573
            APV+ A    T +A+   L  +  QH+   +      + SQ+WR+ T      +   + L ++ I  FRV+ERQ GS KFG+F+ L  +++   + +  ++ P      GP  L+ AL   Y+G IP   P+ +    +++++K  LY A+L +  +  + +    + G++V  LY SK+ PL R RVP 
Sbjct:   11 APVTYAYMCATGMASTGALFMDMRQHLT--LDLPAVMKYSQYWRLLTCHFAFDNGIAVALGMYAIFQFRVIERQFGSNKFGTFVILVLLISTILQTS--LKLPAIP---GPYPLIGALLVIYFGNIPKLQPSLYNAMGVQISDKSSLY-AMLSVICLRSFGTTFPFSTGILVGALYQSKYLPLSRLRVPS 192          
BLAST of mRNA_L-digitata_M_contig10128.1.1 vs. uniprot
Match: K3W5T0_GLOUD (UBA domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5T0_GLOUD)

HSP 1 Score: 73.2 bits (178), Expect = 8.700e-12
Identity = 55/152 (36.18%), Postives = 82/152 (53.95%), Query Frame = 1
Query:  124 QWWRVFTSLLPLASMWELLLCLHVIRVFRVLERQMGSAKFGSFLFLAAVLTKTAELAFCVRFPLF--RPPIGPLALLSALATTYYGYIPFSAPAYFTIGDMRVTEKFFLYLAVLVLAFVEPWSSVVSAACGVVVALLYWSKHSPLQRFRVPG 573
            Q+WR+ T+ +       +   L+V+  FRV+ERQMGS KFGS +     LT   ELA  +  P    + P GP ALL ALA  +  YIP   P  F+   +  ++K   YL ++V+    P ++++S A G +  LL+ S  +PL R R+P 
Sbjct:   34 QYWRLLTNQVTFHHGLAVSFGLYVMFQFRVIERQMGSRKFGSLVVFILSLTSGLELAALMSAPSLARQIPGGPYALLGALAVFFNKYIPKLYPRSFSFSGLNFSDKSSTYLLLIVMLGRNP-NTLLSFAPGALFGLLFSS--TPLARLRLPS 182          
BLAST of mRNA_L-digitata_M_contig10128.1.1 vs. uniprot
Match: A0A1W0A914_9STRA (UBA domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A914_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 9.440e-12
Identity = 56/185 (30.27%), Postives = 90/185 (48.65%), Query Frame = 1
Query:   22 ALSIMTALATCFVLSNKSQHMVSLIGYRVFGEASQWWRVFTSLLPLASMWELLLCLHVIRVFRVLERQMGSAKFGSFLFLAAVLTKTAELAFCVRFPLFRP-PIGPLALLSALATTYYGYIPFSAPAYFTIGDMRVTEKFFLYLAVLVLAFVEPWSSVVSAACGVVVALLYWSKHSPLQRFRVPG 573
            A  +M+A A  F   N+       +  R  G+ SQ+WR+ TS         +   +++I   RVLERQ GS KFGSF+ L   L+   ++   ++F   +    GP AL+ AL   Y+G +P   P +     +  ++K   Y  + ++ F     ++     GV+V LLY +K  PL +FR+P 
Sbjct:   21 ATGLMSAAAIFFDRPNEMH-----LDLRKIGKQSQYWRLLTSHFGFGDGVAVAFGIYLIFSCRVLERQFGSKKFGSFVVLVMTLSSLLQIGL-LKFKFVKSIASGPYALIGALMVLYFGNVPKLQPHFVRAMGIAFSDKSPTYFMMCLVCF-RGIDTITPFLTGVLVGLLYQTKSLPLHKFRLPS 198          
BLAST of mRNA_L-digitata_M_contig10128.1.1 vs. uniprot
Match: A0A1C7NLX4_9FUNG (DSC E3 ubiquitin ligase complex subunit 2 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NLX4_9FUNG)

HSP 1 Score: 73.2 bits (178), Expect = 1.370e-11
Identity = 46/153 (30.07%), Postives = 85/153 (55.56%), Query Frame = 1
Query:  124 QWWRVFTSLLPLASMWELLLCLHVIRVFRVLERQMGSAKFGSFLFLAAVLTKTAELAFCV---RFPLFRPPIGPLALLSALATTYYGYIPFSAPAYFTIGDMRVTEKFFLYLAVLVLAFVEPWSSVVSAACGVVVALLYWSKHSPLQRFRVPG 573
            Q+WR+FTS +   +  ++     ++   RV+ERQ GSAK+ +F+ L+ ++    E+   V   +  L   P GP A+L +    Y+  IP +    F I  + +T+K FLY+  + +AF + + ++V A CG++   LY +  + ++++R PG
Sbjct:   52 QFWRLFTSHVAFGNSGDVFFGSLLLYTLRVIERQYGSAKYVAFIALSTIIATFLEIGXLVVGAQIGLKSIPSGPYAILFSSLYQYHRIIPITYR--FRIFGIVMTDKLFLYILAIQMAFSQSYQTLVPALCGLLTGALYRTDITNMKQWRFPG 202          
BLAST of mRNA_L-digitata_M_contig10128.1.1 vs. uniprot
Match: A0A833T6G0_PHYIN (Putative DSC E3 ubiquitin ligase complex subunit 2 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T6G0_PHYIN)

HSP 1 Score: 72.8 bits (177), Expect = 1.470e-11
Identity = 58/192 (30.21%), Postives = 97/192 (50.52%), Query Frame = 1
Query:    4 GAPVSKALSIMTALATCFVLSNKSQHMVSLIGYRVFGEASQWWRVFTSLLPLASMWELLLCLHVIRVFRVLERQMGSAKFGSFLFLAAVLTKTAELAFCVRFPLFRPPI--GPLALLSALATTYYGYIPFSAPAYFTIGDMRVTEKFFLYLAVLVLAFVEPWSSVVSAACGVVVALLYWSKHSPLQRFRVPG 573
            GAPV+ A S+    A+   L     H+++L    +    SQ+WR+ +S L       + L L+ +  FRVLERQ+GS KFGS L    +++   +LA     P     I  GP  ++ A A  +  +IP   P  F++  +  ++K   Y+ +LVL FV  + +++    G  + LL+  + +PL R ++P 
Sbjct:   10 GAPVTYAFSLAVGAASSASLLLDRGHLLALDRDAILSR-SQYWRLISSQLTFHHGLAVSLGLYTVFQFRVLERQLGSRKFGSILVFVLLISGALQLAALTSSPWLAKTIPGGPYPIIGAFAVYFNKFIPKLHPRSFSVWGLHFSDKSSTYMLMLVL-FVRDFRALIPFMGGSFLGLLF--RSTPLGRLQLPS 197          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10128.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPP7_ECTSI5.470e-8967.01Rhomboid domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L6R3_9PHAE3.510e-8766.50UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A024UD62_9STRA6.420e-1736.17UBA domain-containing protein n=2 Tax=Aphanomyces ... [more]
A0A2D4C2S4_PYTIN1.270e-1331.25UBA domain-containing protein n=1 Tax=Pythium insi... [more]
A0A1V9Z9J1_9STRA2.470e-1231.07UBA domain-containing protein n=1 Tax=Achlya hypog... [more]
A0A6G0XD48_9STRA4.740e-1230.00UBA domain-containing protein n=1 Tax=Aphanomyces ... [more]
K3W5T0_GLOUD8.700e-1236.18UBA domain-containing protein n=1 Tax=Globisporang... [more]
A0A1W0A914_9STRA9.440e-1230.27UBA domain-containing protein n=1 Tax=Thraustothec... [more]
A0A1C7NLX4_9FUNG1.370e-1130.07DSC E3 ubiquitin ligase complex subunit 2 n=1 Tax=... [more]
A0A833T6G0_PHYIN1.470e-1130.21Putative DSC E3 ubiquitin ligase complex subunit 2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10128contigL-digitata_M_contig10128:1546..3028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008867160.1
Preferred nameUBAC2
PFAMsDUF1751,Rhomboid,UBA
Model size667
Max annot lvl2759|Eukaryota
KEGG koko:K01365
KEGG Pathwayko04140,ko04142,ko04145,ko04210,ko04612,ko05205,ko05323,ko05418,map04140,map04142,map04145,map04210,map04612,map05205,map05323,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0006355,GO:0006357,GO:0006508,GO:0006807,GO:0006950,GO:0006984,GO:0006991,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010559,GO:0010604,GO:0010605,GO:0010628,GO:0012505,GO:0016020,GO:0016021,GO:0016485,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023052,GO:0030162,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031399,GO:0031625,GO:0031984,GO:0032182,GO:0032268,GO:0032269,GO:0032386,GO:0032387,GO:0032879,GO:0032880,GO:0032933,GO:0032991,GO:0033036,GO:0033157,GO:0033365,GO:0033554,GO:0034613,GO:0035103,GO:0042176,GO:0042177,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044695,GO:0045861,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051223,GO:0051224,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051604,GO:0051641,GO:0051716,GO:0060049,GO:0060255,GO:0060341,GO:0061136,GO:0065007,GO:0070201,GO:0070727,GO:0070861,GO:0070862,GO:0070972,GO:0071501,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090317,GO:0098588,GO:0098791,GO:0098796,GO:1900037,GO:1900039,GO:1901564,GO:1901799,GO:1902494,GO:1902680,GO:1903018,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903506,GO:1903508,GO:1903573,GO:1903827,GO:1903828,GO:1904152,GO:1904153,GO:1904292,GO:1904293,GO:1904950,GO:1905897,GO:1990234,GO:2000112,GO:2001141
Exons5
Evalue1.19e-17
EggNOG OGsKOG4463@1|root,KOG4463@2759|Eukaryota
Ec32 ortholog descriptionPeptidase S54, rhomboid domain
Ec32 orthologEc-18_001990.1
EC3.4.22.15
DescriptionUbiquitin-associated domain-containing protein
Cds size567
COG categoryS
BRITEko00000,ko00001,ko00537,ko01000,ko01002,ko03110
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10128.1.1prot_L-digitata_M_contig10128.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10128 1579..2961 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406616.5321195-UTR-L-digitata_M_contig10128:1545..15781682406616.5321195-UTR-L-digitata_M_contig10128:1545..1578Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig10128 1546..1578 +
1682406616.5897005-UTR-L-digitata_M_contig10128:2961..30281682406616.5897005-UTR-L-digitata_M_contig10128:2961..3028Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig10128 2962..3028 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406616.543418-CDS-L-digitata_M_contig10128:1578..16491682406616.543418-CDS-L-digitata_M_contig10128:1578..1649Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10128 1579..1649 +
1682406616.5530183-CDS-L-digitata_M_contig10128:1897..20141682406616.5530183-CDS-L-digitata_M_contig10128:1897..2014Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10128 1898..2014 +
1682406616.5625937-CDS-L-digitata_M_contig10128:2266..24181682406616.5625937-CDS-L-digitata_M_contig10128:2266..2418Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10128 2267..2418 +
1682406616.571845-CDS-L-digitata_M_contig10128:2574..26631682406616.571845-CDS-L-digitata_M_contig10128:2574..2663Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10128 2575..2663 +
1682406616.5816321-CDS-L-digitata_M_contig10128:2823..29611682406616.5816321-CDS-L-digitata_M_contig10128:2823..2961Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10128 2824..2961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10128.1.1

>prot_L-digitata_M_contig10128.1.1 ID=prot_L-digitata_M_contig10128.1.1|Name=mRNA_L-digitata_M_contig10128.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=189bp
MTALATCFVLSNKSQHMVSLIGYRVFGEASQWWRVFTSLLPLASMWELLL
CLHVIRVFRVLERQMGSAKFGSFLFLAAVLTKTAELAFCVRFPLFRPPIG
PLALLSALATTYYGYIPFSAPAYFTIGDMRVTEKFFLYLAVLVLAFVEPW
SSVVSAACGVVVALLYWSKHSPLQRFRVPGRRLFAVSL*
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mRNA from alignment at L-digitata_M_contig10128:1546..3028+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10128.1.1 ID=mRNA_L-digitata_M_contig10128.1.1|Name=mRNA_L-digitata_M_contig10128.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=1483bp|location=Sequence derived from alignment at L-digitata_M_contig10128:1546..3028+ (Laminaria digitata LdigPH10_18mv male)
GCAGGAGCGCCTGTGAGCAAGGCATTGTCCATCATGACTGCACTAGCCAC GTGTTTCGTCTTGTCCAACAAAAGCCAACATATGGTTTCTCTCATAGGTT ACCGGTGAGTAATATAACATGTGCGCGCAGCTGTCGGGGTTCAATTGCGG TTGGATACGCCACAGGTATGGTAATCTTAATCGTTGGAATAGGCGGCGGA GAATGGTGTTTTTGCTTGCCTATTCCGCTCGTGCGTCGTGTGCTGTTGTG GTCGGAATGCACAGCCACTCGATCGCAGGTAGACATAACGGCAGACGTAG GCAGCCGAAGAGTCCATCGTAATCCGCAACTTGTGTGCATGTGTTTTGGC AGAGTTTTCGGCGAGGCCAGTCAGTGGTGGCGAGTCTTCACCAGCTTGCT TCCACTGGCAAGCATGTGGGAGCTTTTGTTGTGTCTGCATGTCATCCGCG TCTTCAGAGTTCTGGAAAGGTCAGTCAAGTTTTCCATCCCATCTGACATC CCTTCACCCAACGTTTCTTTTTGACAAGCTTTGTTTTTGCAGAGAGAACG TCGCATAGTTGCACACGTGTCGGCGCCCCCACACATTATCTCCATTGCTT ATGCGCTGACTGCATGTTGTAGGTCCTACAGAGTATTCGCTGTGAAACTG CGTGCGGAATTGCATCATTACGCTGAGCCCGCGAACGTCCAACCTTTCCC CATGACCTCCTTGACCTACAGACAAATGGGATCCGCAAAATTTGGTTCGT TCCTGTTCTTGGCTGCAGTTTTGACCAAGACTGCAGAATTGGCCTTCTGC GTGCGATTTCCGCTCTTCCGGCCACCAATAGGCCCACTTGCCTTACTGAG CGCTTTGGCGACAACCTACTACGGTGAGTACATGGGCGTGGCCGGTGACA ACAGTACCCCCGCGTGTTGATGAGAGAACAAGTTGCGCCTGGATAATGCG AGTTCCGGGAAGTGGTGCAACTGAAAGGACAGTTCACTTACAGTACTGTA TGTGCTTCCTTTCTGCGTCCCACCTCCAGGTTACATACCTTTCAGCGCTC CAGCGTACTTCACTATCGGGGACATGCGAGTGACTGAAAAGTTCTTCTTA TACTTGGCGGTGCTGGTGGTGAGTGCCTGCCCTGCTGTCGGTGGTTCTGT AGTCTTGACGTCTTGACTGTGGTAAGCTGGTGCAGCCTCAGCTCGAATAA TGACTGGGCGTTTGGTTAGCCCCCCCCGACTCTTAATACGTCACTCTGAT ATTTGTGTCATTGTGTCATATTTTGCAGCTTGCTTTCGTCGAACCCTGGA GCTCGGTCGTGTCGGCCGCCTGCGGCGTGGTGGTGGCACTACTCTACTGG TCGAAGCATTCGCCTCTTCAGCGCTTCCGCGTGCCTGGTCGGCGATTATT TGCGGTGAGTTTATAGAGTATTCGCGTTGCATCAGGTGTTTTGTGTTGAT GAGTTTGCGACATCGATAAACCTGGTGGCGAGC
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Coding sequence (CDS) from alignment at L-digitata_M_contig10128:1546..3028+

>mRNA_L-digitata_M_contig10128.1.1 ID=mRNA_L-digitata_M_contig10128.1.1|Name=mRNA_L-digitata_M_contig10128.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=567bp|location=Sequence derived from alignment at L-digitata_M_contig10128:1546..3028+ (Laminaria digitata LdigPH10_18mv male)
ATGACTGCACTAGCCACGTGTTTCGTCTTGTCCAACAAAAGCCAACATAT
GGTTTCTCTCATAGGTTACCGAGTTTTCGGCGAGGCCAGTCAGTGGTGGC
GAGTCTTCACCAGCTTGCTTCCACTGGCAAGCATGTGGGAGCTTTTGTTG
TGTCTGCATGTCATCCGCGTCTTCAGAGTTCTGGAAAGACAAATGGGATC
CGCAAAATTTGGTTCGTTCCTGTTCTTGGCTGCAGTTTTGACCAAGACTG
CAGAATTGGCCTTCTGCGTGCGATTTCCGCTCTTCCGGCCACCAATAGGC
CCACTTGCCTTACTGAGCGCTTTGGCGACAACCTACTACGGTTACATACC
TTTCAGCGCTCCAGCGTACTTCACTATCGGGGACATGCGAGTGACTGAAA
AGTTCTTCTTATACTTGGCGGTGCTGGTGCTTGCTTTCGTCGAACCCTGG
AGCTCGGTCGTGTCGGCCGCCTGCGGCGTGGTGGTGGCACTACTCTACTG
GTCGAAGCATTCGCCTCTTCAGCGCTTCCGCGTGCCTGGTCGGCGATTAT
TTGCGGTGAGTTTATAG
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