mRNA_L-digitata_M_contig10128.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig10128.1.1 vs. uniprot
Match: D8LPP7_ECTSI (Rhomboid domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP7_ECTSI) HSP 1 Score: 270 bits (689), Expect = 5.470e-89 Identity = 132/197 (67.01%), Postives = 163/197 (82.74%), Query Frame = 1
Query: 1 AGAPVSKALSIMTALATCFVLSNKSQHMVSLIGYRVFGEASQWWRVFTSLLPLASMWELLLCLHVIRVFRVLERQMGSAKFGSFLFLAAVLTKTAELAFCVRFPLFRPPIGPLALLSALATTYYGYIPFSAPAYFTIGDMRVTEKFFLYLAVLVLAFVEPWSSVVSAACGVVVALLYWSKHSPLQRFRVPGRRLFAV 591
AGAPVSK+L+I+TA++T VL N SQ +LIG RVFG+ QWWR+ TS+ PL S+WEL+LCL++IRVFR+LER +GSAKFGSFLFLAA+L+K+ ELA CV FP+FRPP+GPL +LSA+ YYGYIP +APAY TIG++RVT KFF Y AVLVLAF + ++S +SA CGVVVA LYWS SPLQ FR+PGR+LFAV
Sbjct: 7 AGAPVSKSLAIITAVSTLVVLQNNSQDTAALIGVRVFGDDGQWWRLLTSMFPLGSVWELILCLNIIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFPVFRPPLGPLPILSAVGVAYYGYIPSTAPAYLTIGNVRVTGKFFAYAAVLVLAFHDTYNSAMSAGCGVVVAFLYWSNRSPLQSFRIPGRQLFAV 203
BLAST of mRNA_L-digitata_M_contig10128.1.1 vs. uniprot
Match: A0A6H5L6R3_9PHAE (UBA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R3_9PHAE) HSP 1 Score: 268 bits (686), Expect = 3.510e-87 Identity = 131/197 (66.50%), Postives = 163/197 (82.74%), Query Frame = 1
Query: 1 AGAPVSKALSIMTALATCFVLSNKSQHMVSLIGYRVFGEASQWWRVFTSLLPLASMWELLLCLHVIRVFRVLERQMGSAKFGSFLFLAAVLTKTAELAFCVRFPLFRPPIGPLALLSALATTYYGYIPFSAPAYFTIGDMRVTEKFFLYLAVLVLAFVEPWSSVVSAACGVVVALLYWSKHSPLQRFRVPGRRLFAV 591
AGAPVSK+L+I+TA++T VL N SQ +LIG RVFG+ QWWR+ TS+ PL S+WEL+LCL++IRVFR+LER +GSAKFGSFLFLAA+L+K+ ELA CV FP FRPP+GPL +LSA+ YYGYIP +APAY T+G++RVT KFF Y AVLVLAF + ++S +SA CGVVVALLYWS SPLQ FR+PGR+LFA+
Sbjct: 7 AGAPVSKSLAIVTAVSTLVVLQNNSQDTAALIGIRVFGDDGQWWRLLTSMFPLGSVWELILCLNIIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFPFFRPPLGPLPILSAVGVAYYGYIPSTAPAYLTVGNVRVTGKFFAYAAVLVLAFHDTYNSAMSAGCGVVVALLYWSHLSPLQSFRIPGRQLFAI 203
BLAST of mRNA_L-digitata_M_contig10128.1.1 vs. uniprot
Match: A0A024UD62_9STRA (UBA domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UD62_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 6.420e-17 Identity = 68/188 (36.17%), Postives = 103/188 (54.79%), Query Frame = 1
Query: 10 PVSKALSIMTALATCFVLSNKSQHMVSLIGYRVFGEASQWWRVFTSLLPLASMWELLLCLHVIRVFRVLERQMGSAKFGSFLFLAAVLTKTAELAFCVRFPLFRPPIGPLALLSALATTYYGYIPFSAPAYFTIGDMRVTEKFFLYLAVLVLAFVEPWSSVVSAACGVVVALLYWSKHSPLQRFRVPG 573
PV+ A T +A+ L +H ++L V + SQ+WR+ T L + + ++V+ FRV+ERQ GS KFG+F+ L +LT TA L ++ P P GP L+ ALA YY +P P +++ + VT+K +Y +L L + +S+ A GV+V LLY SK+ PL + RVPG
Sbjct: 12 PVTYAYLSATGMASVAALFMDMRHQLTLDLVSVT-KLSQYWRLLTCHFALDNGIAVAFGMYVLFQFRVIERQFGSNKFGTFIILV-LLTSTA-LQVWLKLP--TTP-GPYPLIGALAVIYYHNVPLLQPRLYSLLGLNVTDKSSIY-GLLSLVCLRSYSTAFPFATGVLVGLLYQSKYLPLSKLRVPG 192
BLAST of mRNA_L-digitata_M_contig10128.1.1 vs. uniprot
Match: A0A2D4C2S4_PYTIN (UBA domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2S4_PYTIN) HSP 1 Score: 78.6 bits (192), Expect = 1.270e-13 Identity = 60/192 (31.25%), Postives = 98/192 (51.04%), Query Frame = 1
Query: 4 GAPVSKALSIMTALATCFVLSNKSQHMVSLIGYRVFGEASQWWRVFTSLLPLASMWELLLCLHVIRVFRVLERQMGSAKFGSFLFLAAVLTKTAELAFCVRFPLF--RPPIGPLALLSALATTYYGYIPFSAPAYFTIGDMRVTEKFFLYLAVLVLAFVEPWSSVVSAACGVVVALLYWSKHSPLQRFRVPG 573
GAPV+ A S+ A+ L + SL+G Q+WR+++S L L++I FRVLERQMGS KFGS +F ++ +LA + P R P GP ALL AL + ++P P ++I + ++K Y+ + + +P ++S G+++ +L+ S +PL + R+PG
Sbjct: 10 GAPVTYAASLAIGAASSATLLFDMEGPFSLLGRDAVVRRGQYWRLWSSQLAFHHGLAASFGLYIIFQFRVLERQMGSRKFGSLVFFIWTISALLKLAALLSMPSLARRXPPGPYALLGALTVFFMKFVPRLHPKAYSIVGINFSDKSSTYVLMAAILLHDP-RKLLSYIPGMLLGVLFSS--TPLSKLRLPG 198
BLAST of mRNA_L-digitata_M_contig10128.1.1 vs. uniprot
Match: A0A1V9Z9J1_9STRA (UBA domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z9J1_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 2.470e-12 Identity = 55/177 (31.07%), Postives = 91/177 (51.41%), Query Frame = 1
Query: 91 LIGYRVFGEASQWWRVFTSLLPLASMWELLLCLHVIRVFRVLERQMGSAKFGSFLFLAAVLTKTAELAFCVRFPLFRPPI--GPLALLSALATTYYGYIPFSA--------------PAYFTIGDMRVTEKFFLYLAVLVLAFVEPWSSVVSAACGVVVALLYWSKHSPLQRFRVPG 573
++ ++ SQ+WR+ T L + + +++I RV+ERQ GS KFGSF+FL VL+ ++ C++ + P I GP A++ AL ++G + FS+ PA F+ + +EK Y ++ L + + + + G +V LLY SK PL RFR+PG
Sbjct: 54 IVDLKMMSRHSQYWRLITCHLGFQNGMAVAFGIYLIFNCRVIERQFGSKKFGSFMFLVLVLSTLLQIV-CLKAKVV-PTIASGPYAVIGALMVVFFGTLSFSSHFTVASIGNVPKLQPALFSAMGLNFSEKSSTYF-MMCLVCLRSVDAALPFSTGALVGLLYQSKRLPLARFRLPG 227
BLAST of mRNA_L-digitata_M_contig10128.1.1 vs. uniprot
Match: A0A6G0XD48_9STRA (UBA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XD48_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 4.740e-12 Identity = 57/190 (30.00%), Postives = 98/190 (51.58%), Query Frame = 1
Query: 7 APVSKALSIMTALATCFVL-SNKSQHMVSLIGYRVFGEASQWWRVFTSLLPLASMWELLLCLHVIRVFRVLERQMGSAKFGSFLFLAAVLTKTAELAFCVRFPLFRPPIGPLALLSALATTYYGYIPFSAPAYFTIGDMRVTEKFFLYLAVLVLAFVEPWSSVVSAACGVVVALLYWSKHSPLQRFRVPG 573
APV+ A T +A+ L + QH+ + + SQ+WR+ T + + L ++ I FRV+ERQ GS KFG+F+ L +++ + + ++ P GP L+ AL Y+G IP P+ + +++++K LY A+L + + + + + G++V LY SK+ PL R RVP
Sbjct: 11 APVTYAYMCATGMASTGALFMDMRQHLT--LDLPAVMKYSQYWRLLTCHFAFDNGIAVALGMYAIFQFRVIERQFGSNKFGTFVILVLLISTILQTS--LKLPAIP---GPYPLIGALLVIYFGNIPKLQPSLYNAMGVQISDKSSLY-AMLSVICLRSFGTTFPFSTGILVGALYQSKYLPLSRLRVPS 192
BLAST of mRNA_L-digitata_M_contig10128.1.1 vs. uniprot
Match: K3W5T0_GLOUD (UBA domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5T0_GLOUD) HSP 1 Score: 73.2 bits (178), Expect = 8.700e-12 Identity = 55/152 (36.18%), Postives = 82/152 (53.95%), Query Frame = 1
Query: 124 QWWRVFTSLLPLASMWELLLCLHVIRVFRVLERQMGSAKFGSFLFLAAVLTKTAELAFCVRFPLF--RPPIGPLALLSALATTYYGYIPFSAPAYFTIGDMRVTEKFFLYLAVLVLAFVEPWSSVVSAACGVVVALLYWSKHSPLQRFRVPG 573
Q+WR+ T+ + + L+V+ FRV+ERQMGS KFGS + LT ELA + P + P GP ALL ALA + YIP P F+ + ++K YL ++V+ P ++++S A G + LL+ S +PL R R+P
Sbjct: 34 QYWRLLTNQVTFHHGLAVSFGLYVMFQFRVIERQMGSRKFGSLVVFILSLTSGLELAALMSAPSLARQIPGGPYALLGALAVFFNKYIPKLYPRSFSFSGLNFSDKSSTYLLLIVMLGRNP-NTLLSFAPGALFGLLFSS--TPLARLRLPS 182
BLAST of mRNA_L-digitata_M_contig10128.1.1 vs. uniprot
Match: A0A1W0A914_9STRA (UBA domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A914_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 9.440e-12 Identity = 56/185 (30.27%), Postives = 90/185 (48.65%), Query Frame = 1
Query: 22 ALSIMTALATCFVLSNKSQHMVSLIGYRVFGEASQWWRVFTSLLPLASMWELLLCLHVIRVFRVLERQMGSAKFGSFLFLAAVLTKTAELAFCVRFPLFRP-PIGPLALLSALATTYYGYIPFSAPAYFTIGDMRVTEKFFLYLAVLVLAFVEPWSSVVSAACGVVVALLYWSKHSPLQRFRVPG 573
A +M+A A F N+ + R G+ SQ+WR+ TS + +++I RVLERQ GS KFGSF+ L L+ ++ ++F + GP AL+ AL Y+G +P P + + ++K Y + ++ F ++ GV+V LLY +K PL +FR+P
Sbjct: 21 ATGLMSAAAIFFDRPNEMH-----LDLRKIGKQSQYWRLLTSHFGFGDGVAVAFGIYLIFSCRVLERQFGSKKFGSFVVLVMTLSSLLQIGL-LKFKFVKSIASGPYALIGALMVLYFGNVPKLQPHFVRAMGIAFSDKSPTYFMMCLVCF-RGIDTITPFLTGVLVGLLYQTKSLPLHKFRLPS 198
BLAST of mRNA_L-digitata_M_contig10128.1.1 vs. uniprot
Match: A0A1C7NLX4_9FUNG (DSC E3 ubiquitin ligase complex subunit 2 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NLX4_9FUNG) HSP 1 Score: 73.2 bits (178), Expect = 1.370e-11 Identity = 46/153 (30.07%), Postives = 85/153 (55.56%), Query Frame = 1
Query: 124 QWWRVFTSLLPLASMWELLLCLHVIRVFRVLERQMGSAKFGSFLFLAAVLTKTAELAFCV---RFPLFRPPIGPLALLSALATTYYGYIPFSAPAYFTIGDMRVTEKFFLYLAVLVLAFVEPWSSVVSAACGVVVALLYWSKHSPLQRFRVPG 573
Q+WR+FTS + + ++ ++ RV+ERQ GSAK+ +F+ L+ ++ E+ V + L P GP A+L + Y+ IP + F I + +T+K FLY+ + +AF + + ++V A CG++ LY + + ++++R PG
Sbjct: 52 QFWRLFTSHVAFGNSGDVFFGSLLLYTLRVIERQYGSAKYVAFIALSTIIATFLEIGXLVVGAQIGLKSIPSGPYAILFSSLYQYHRIIPITYR--FRIFGIVMTDKLFLYILAIQMAFSQSYQTLVPALCGLLTGALYRTDITNMKQWRFPG 202
BLAST of mRNA_L-digitata_M_contig10128.1.1 vs. uniprot
Match: A0A833T6G0_PHYIN (Putative DSC E3 ubiquitin ligase complex subunit 2 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T6G0_PHYIN) HSP 1 Score: 72.8 bits (177), Expect = 1.470e-11 Identity = 58/192 (30.21%), Postives = 97/192 (50.52%), Query Frame = 1
Query: 4 GAPVSKALSIMTALATCFVLSNKSQHMVSLIGYRVFGEASQWWRVFTSLLPLASMWELLLCLHVIRVFRVLERQMGSAKFGSFLFLAAVLTKTAELAFCVRFPLFRPPI--GPLALLSALATTYYGYIPFSAPAYFTIGDMRVTEKFFLYLAVLVLAFVEPWSSVVSAACGVVVALLYWSKHSPLQRFRVPG 573
GAPV+ A S+ A+ L H+++L + SQ+WR+ +S L + L L+ + FRVLERQ+GS KFGS L +++ +LA P I GP ++ A A + +IP P F++ + ++K Y+ +LVL FV + +++ G + LL+ + +PL R ++P
Sbjct: 10 GAPVTYAFSLAVGAASSASLLLDRGHLLALDRDAILSR-SQYWRLISSQLTFHHGLAVSLGLYTVFQFRVLERQLGSRKFGSILVFVLLISGALQLAALTSSPWLAKTIPGGPYPIIGAFAVYFNKFIPKLHPRSFSVWGLHFSDKSSTYMLMLVL-FVRDFRALIPFMGGSFLGLLF--RSTPLGRLQLPS 197 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10128.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig10128.1.1 >prot_L-digitata_M_contig10128.1.1 ID=prot_L-digitata_M_contig10128.1.1|Name=mRNA_L-digitata_M_contig10128.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=189bp MTALATCFVLSNKSQHMVSLIGYRVFGEASQWWRVFTSLLPLASMWELLLback to top mRNA from alignment at L-digitata_M_contig10128:1546..3028+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig10128.1.1 ID=mRNA_L-digitata_M_contig10128.1.1|Name=mRNA_L-digitata_M_contig10128.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=1483bp|location=Sequence derived from alignment at L-digitata_M_contig10128:1546..3028+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig10128:1546..3028+ >mRNA_L-digitata_M_contig10128.1.1 ID=mRNA_L-digitata_M_contig10128.1.1|Name=mRNA_L-digitata_M_contig10128.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=567bp|location=Sequence derived from alignment at L-digitata_M_contig10128:1546..3028+ (Laminaria digitata LdigPH10_18mv male)back to top |