mRNA_L-digitata_M_contig101277.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101277.1.1
Unique NamemRNA_L-digitata_M_contig101277.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig101277.1.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.220e-13
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 QYGAAVPGGVEHMGLRARTLHETGNWLVLTDCAIAFNAVKRTAVLKEVANCVPALTPSVAKCYGTRP 201
            Q+G AV GGVE + + A+ +H+TGNW++ TDC+ AFN  KRTA++ + A  +P L   +A+CY   P
Sbjct:  651 QFGVAVAGGVERVAMEAQLVHQTGNWIIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCYDEIP 717
[Close]
BLAST of mRNA_L-digitata_M_contig101277.1.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.400e-13
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 QYGAAVPGGVEHMGLRARTLHETGNWLVLTDCAIAFNAVKRTAVLKEVANCVPALTPSVAKCYGTRP 201
            Q+G AV GGVE + + A+ +H+TG+W+V TDC+ AFN  KRTA++ + A  VP L   +A+CY   P
Sbjct:  113 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIP 179
[Close]
BLAST of mRNA_L-digitata_M_contig101277.1.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.610e-13
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:    1 QYGAAVPGGVEHMGLRARTLHETGNWLVLTDCAIAFNAVKRTAVLKEVANCVPALTPSVAKCYGTRP 201
            Q+GAAV GGVE + + A+ +H+TG+W+V TDC+ AFN  KRTA++ + A  VP L   +A+CY   P
Sbjct:   28 QFGAAVVGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIP 94
[Close]
BLAST of mRNA_L-digitata_M_contig101277.1.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.800e-13
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:    1 QYGAAVPGGVEHMGLRARTLHETGNWLVLTDCAIAFNAVKRTAVLKEVANCVPALTPSVAKCYGTRPRSLGGTRICFGARSIQ 249
            Q+G AV GGVE + + A+ +H+TG+W+V TDC+ AFN  KRTA++ + A  VP L   +A+CY   P     T      R+I+
Sbjct:  203 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGARRTIE 285
[Close]
BLAST of mRNA_L-digitata_M_contig101277.1.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.100e-13
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 QYGAAVPGGVEHMGLRARTLHETGNWLVLTDCAIAFNAVKRTAVLKEVANCVPALTPSVAKCYGTRP 201
            Q+G AV GGVE + + A+ +H+TG+W+V TDC+ AFN  KRTA++ + A  VP L   +A+CY   P
Sbjct:  112 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIP 178
[Close]
BLAST of mRNA_L-digitata_M_contig101277.1.1 vs. uniprot
Match: A0A6H5KUZ8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ8_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.110e-13
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 QYGAAVPGGVEHMGLRARTLHETGNWLVLTDCAIAFNAVKRTAVLKEVANCVPALTPSVAKCYGTRP 201
            Q+G AV GGVE + + A+ +H+TG+W+V TDC+ AFN  KRTA++ + A  VP L   +A+CY   P
Sbjct:   69 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIP 135
[Close]
BLAST of mRNA_L-digitata_M_contig101277.1.1 vs. uniprot
Match: A0A6H5KA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA96_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.140e-13
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 QYGAAVPGGVEHMGLRARTLHETGNWLVLTDCAIAFNAVKRTAVLKEVANCVPALTPSVAKCYGTRP 201
            Q+G AV GGVE + + A+ +H+TG+W+V TDC+ AFN  KRTA++ + A  VP L   +A+CY   P
Sbjct:  488 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIP 554
[Close]
BLAST of mRNA_L-digitata_M_contig101277.1.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.150e-13
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 QYGAAVPGGVEHMGLRARTLHETGNWLVLTDCAIAFNAVKRTAVLKEVANCVPALTPSVAKCYGTRP 201
            Q+G AV GGVE + + A+ +H+TG+W+V TDC+ AFN  KRTA++ + A  VP L   +A+CY   P
Sbjct:  502 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIP 568
[Close]
BLAST of mRNA_L-digitata_M_contig101277.1.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.200e-13
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 QYGAAVPGGVEHMGLRARTLHETGNWLVLTDCAIAFNAVKRTAVLKEVANCVPALTPSVAKCYGTRP 201
            Q+G AV GGVE + + A+ +H+TG+W+V TDC+ AFN  KRTA++ + A  VP L   +A+CY   P
Sbjct:  481 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIP 547
[Close]
BLAST of mRNA_L-digitata_M_contig101277.1.1 vs. uniprot
Match: A0A6H5KAK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK8_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 7.700e-13
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 QYGAAVPGGVEHMGLRARTLHETGNWLVLTDCAIAFNAVKRTAVLKEVANCVPALTPSVAKCYGTRP 201
            Q+G AV GGVE + + A+ +H+TG+W+V TDC+ AFN  KRTA++ + A  VP L   +A+CY   P
Sbjct:  431 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKNVPDLVGYIARCYDEIP 497
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101277.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JH58_9PHAE1.220e-1346.27Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L4Y4_9PHAE1.400e-1347.76Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KYJ9_9PHAE1.610e-1349.25Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KR59_9PHAE2.800e-1342.17Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LL14_9PHAE4.100e-1347.76Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KUZ8_9PHAE4.110e-1347.76Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA96_9PHAE4.140e-1347.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI32_9PHAE4.150e-1347.76Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE4.200e-1347.76Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KAK8_9PHAE7.700e-1347.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101277contigL-digitata_M_contig101277:283..534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size252
Hectar predicted targeting categoryother localisation
Exons1
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406616.4387968-CDS-L-digitata_M_contig101277:282..5341682406616.4387968-CDS-L-digitata_M_contig101277:282..534Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101277 283..534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101277.1.1prot_L-digitata_M_contig101277.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101277 283..534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101277.1.1

>prot_L-digitata_M_contig101277.1.1 ID=prot_L-digitata_M_contig101277.1.1|Name=mRNA_L-digitata_M_contig101277.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=84bp
QYGAAVPGGVEHMGLRARTLHETGNWLVLTDCAIAFNAVKRTAVLKEVAN
CVPALTPSVAKCYGTRPRSLGGTRICFGARSIQI
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mRNA from alignment at L-digitata_M_contig101277:283..534+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101277.1.1 ID=mRNA_L-digitata_M_contig101277.1.1|Name=mRNA_L-digitata_M_contig101277.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=252bp|location=Sequence derived from alignment at L-digitata_M_contig101277:283..534+ (Laminaria digitata LdigPH10_18mv male)
CAGTATGGGGCCGCCGTACCGGGCGGAGTGGAGCATATGGGATTGAGGGC
TAGGACGCTACACGAGACGGGCAACTGGCTCGTTCTCACGGACTGCGCCA
TCGCCTTCAACGCCGTCAAAAGGACGGCGGTGCTAAAAGAGGTTGCAAAC
TGCGTGCCAGCGCTCACGCCGTCAGTGGCCAAGTGCTACGGCACAAGACC
CCGTTCGTTAGGAGGAACAAGAATATGCTTTGGAGCACGAAGCATCCAAA
TC
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Coding sequence (CDS) from alignment at L-digitata_M_contig101277:283..534+

>mRNA_L-digitata_M_contig101277.1.1 ID=mRNA_L-digitata_M_contig101277.1.1|Name=mRNA_L-digitata_M_contig101277.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=252bp|location=Sequence derived from alignment at L-digitata_M_contig101277:283..534+ (Laminaria digitata LdigPH10_18mv male)
CAGTATGGGGCCGCCGTACCGGGCGGAGTGGAGCATATGGGATTGAGGGC
TAGGACGCTACACGAGACGGGCAACTGGCTCGTTCTCACGGACTGCGCCA
TCGCCTTCAACGCCGTCAAAAGGACGGCGGTGCTAAAAGAGGTTGCAAAC
TGCGTGCCAGCGCTCACGCCGTCAGTGGCCAAGTGCTACGGCACAAGACC
CCGTTCGTTAGGAGGAACAAGAATATGCTTTGGAGCACGAAGCATCCAAA
TC
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