mRNA_L-digitata_M_contig10126.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10126.1.1
Unique NamemRNA_L-digitata_M_contig10126.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig10126.1.1 vs. uniprot
Match: A0A6H5L446_9PHAE (UDENN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L446_9PHAE)

HSP 1 Score: 349 bits (895), Expect = 1.880e-108
Identity = 207/346 (59.83%), Postives = 239/346 (69.08%), Query Frame = 1 
Query:    1 PGLTIRNRTGKRGXXXXXXXXXXXXXAEAAWGKEAARGGGDGKAWSVMMEQCYVMVSCHRNHPVMFKVLKAVVDAERSTRPGTAPTSSPPPPRPRSLPHSGGRGVESGLGSLSPSVRGEGXXXXXXXTA--KDSPRSASSFRTVAAAAAEEAKVRHRRMLRDRFLHQVRTDRSCVGEGKKVSIHCPAFLRAPLELTSPSLDLWSTAVLFSSVAEEIILRALDALLLEKTLVVCGRDVGMVSIVATALLSLLDPFKWEGVFVPVVPLKLMDVLESPVPALVGVQAPFDPVEYAFDGVLVLDLDARQASGQLFMGGMDEKLPVSDDLVMALGKANTLRGRGRGAGAPV 1032
            PG+T+RNRT                   A  G+ A+ G G   +WSV +E+ YVMVS HRNHP+MFKVLKA+ DAERS RPG  P+SS     P              + SLSP     G       +   K+   SAS FR+VAAAAAE+AK RHRRM+RD+FL QVRTD+ C+ EGKKVS++CPAFLRAPLELT PSL+LWSTAVLF  V+E  ILRALD LLLEKTLVVCGRD+G+VS+ ATALLSLLDPFKWEGVFVPVVPL LMDVL+SPVPALVGVQAP DP+  A DGV VLDLDA  ASG+LFM G  E   V   LV +L  ANTLRG+ R +GAP 
Sbjct:  481 PGVTLRNRT----VNPRTVAAAAAVIGGATKGRRASAGRGR-LSWSVQVEKGYVMVSSHRNHPLMFKVLKAIADAERSARPGANPSSSS--LSPXXXXXXXXXXXXXVIASLSPPRLPSGGVVGVNKSGGGKEKSPSASRFRSVAAAAAEQAKERHRRMVRDKFLQQVRTDKRCIEEGKKVSLYCPAFLRAPLELTPPSLELWSTAVLFGCVSERTILRALDLLLLEKTLVVCGRDIGIVSMAATALLSLLDPFKWEGVFVPVVPLALMDVLDSPVPALVGVQAPLDPLSSAADGVAVLDLDANNASGELFMAGAHEDSTVPGHLVTSLEHANTLRGKRRSSGAPA 819
[Close]
BLAST of mRNA_L-digitata_M_contig10126.1.1 vs. uniprot
Match: A0A4D9CNF6_9STRA (UDENN domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CNF6_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.190e-22
Identity = 68/177 (38.42%), Postives = 105/177 (59.32%), Query Frame = 1 
Query:  475 RDRFLHQVRTDRSCVGEGKKVSIHCPAFLRAPLELTSPSLDL--WSTAVLFSSVAEEIILRALDALLLEKTLVVCGRDVGMVSIVATALLSLLDPFKWEGVFVPVVPLKLMDVLESPVPALVGVQAPFDPVEYAFDGVLVLDLDARQASGQLFMGGMDEKLPVSDDLVMALGKANTL 999
            R RFL  ++ D      G  +++  P +  +   L  P + L  W+ AVLFS V+ ++I++ ++ LLLE++LVV G D G+VS ++TA +SLL PFKW+GVF+P++P  L D+L+SPVP ++GVQ PFDP            L   +    L +  +  KLP+   L+ AL +A+ L
Sbjct:  467 RRRFLRYIQQDVVFPSTGI-LTLSFPPYAPSTTRLDLPLVPLQDWTVAVLFSHVSVDVIIKCVNLLLLEQSLVVIGEDQGLVSAISTAFVSLLQPFKWDGVFIPLLPTALSDILQSPVPFVLGVQPPFDPTRSTPHAAA---LHIGRCKEHLRLPDLTVKLPLCYQLLQALKQASEL 639
[Close]
BLAST of mRNA_L-digitata_M_contig10126.1.1 vs. uniprot
Match: A0A482S8K5_9ARCH (DENN domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S8K5_9ARCH)

HSP 1 Score: 79.0 bits (193), Expect = 1.180e-12
Identity = 50/130 (38.46%), Postives = 79/130 (60.77%), Query Frame = 1 
Query:  475 RDRFLHQVRTDRSCVGEG--KKVSIHC--PAFL-RAPLELTSPSLDLWSTAVLFSSVAEEIILRALDALLLEKTLVVCGRDVGMVSIVATALLSLLDPFKWEGVFVPVVPLKLMDVLESPVPALVGVQAP 849
            R+ FL  +RT      EG  KK S++   P+++    +  T  ++D+W+ AVL   +  ++I+     LLLEK+L++ G D  +VSI+ T  L LL P+KW G+FVP++P    +VLE+PVP +VG+  P
Sbjct:   23 RNDFLSFLRTYNINKLEGGWKKGSVNLSFPSYMDNLVVSKTQATIDMWAVAVLTYFIPTDVIVHIHLMLLLEKSLIILGSDAALVSILCTGFLHLLAPYKWTGIFVPLLPPLAQEVLEAPVPFIVGMYTP 152
[Close]
BLAST of mRNA_L-digitata_M_contig10126.1.1 vs. uniprot
Match: A0A7S3GU22_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU22_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.160e-12
Identity = 36/102 (35.29%), Postives = 69/102 (67.65%), Query Frame = 1 
Query:  541 IHCPAFL---RAPLELTSPSLDLWSTAVLFSSVAEEIILRALDALLLEKTLVVCGRDVGMVSIVATALLSLLDPFKWEGVFVPVVPLKLMDVLESPVPALVG 837
            I CP ++   +  L+    + + W+ AVLF+ ++ +II + ++ LL+EK+L++ G++ G+V+ +  A+++L+ PF WEG+FVP+VP    ++  +PVP +VG
Sbjct:   14 IRCPGYIEDFKVDLKALLTTKE-WTCAVLFTHLSSQIIFKIINLLLMEKSLIIHGKNAGIVTTITMAVINLISPFLWEGIFVPLVPDNARELFGAPVPLIVG 114
[Close]
BLAST of mRNA_L-digitata_M_contig10126.1.1 vs. uniprot
Match: A0A7S3GQI8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GQI8_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.990e-10
Identity = 40/103 (38.83%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:  592 LDLWSTAVLFSSVAEEIILRALDALLLEKTLVVCGRDVGMVSIVATALLSLLDPFKWEGVFVPVVPLKLMDVLESPVPALVGVQAPFDPVEYAFDGVLVLDLD 900
            L  W+ A+L + +  E+I++ L  LL E++L+V G D GMV+ V +A   LL PF WEG+ VP++P+   + L++PVP ++GV A   P         VL L+
Sbjct:  707 LKEWTVAILIALLPSELIVKILSQLLQEQSLLVYGSDAGMVTAVVSAFTLLLQPFSWEGIHVPLLPMAAYEALDAPVPFVIGVVASSRPAVPISSSAGVLSLN 809
[Close]
BLAST of mRNA_L-digitata_M_contig10126.1.1 vs. uniprot
Match: D2UZH5_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2UZH5_NAEGR)

HSP 1 Score: 72.0 bits (175), Expect = 4.240e-10
Identity = 51/169 (30.18%), Postives = 88/169 (52.07%), Query Frame = 1 
Query:  496 VRTDRSCVGEGKKVSIHCPAFLRAPLELTSPSLDLWSTAVLFSSVAEEIILRALDALLLEKTLVVCGRDVGMVSIVATALLSLLDPFKWEGVFVPVVPLKLMDVLESPVPALVGVQAPFDPV--EYAFDG-----VLVLDLDARQASGQLFMGGMDEKLPVSDDLVMAL 981
            V+T     G+ ++V +  P        L  P L+  +  +LF S++ + I+     LL+E+ +V+   D+  +S    A++S+L PF W+ VF+PV+P  L+D + SPVP ++GV +   P   E   DG     VL +D+D+ + S    +    + LP + DL+  L
Sbjct:  459 VKTVNPKTGQQEEVKLSRPI-------LADPMLEYINFNILFESLSADNIITMFAFLLMERRMVIFSNDISKLSAFCQAMISILYPFTWQHVFIPVLPQSLVDYVCSPVPFVIGVLSNHKPYIEELKKDGQVEAEVLYIDIDSGKVSEPSTLKDQKKILPSNKDLIKKL 620
[Close]
BLAST of mRNA_L-digitata_M_contig10126.1.1 vs. uniprot
Match: UPI0008FEBA2E (uncharacterized protein LOC101261930 isoform X2 n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=UPI0008FEBA2E)

HSP 1 Score: 71.6 bits (174), Expect = 5.850e-10
Identity = 34/84 (40.48%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:  592 LDLWSTAVLFSSVAEEIILRALDALLLEKTLVVCGRDVGMVSIVATALLSLLDPFKWEGVFVPVVPLKLMDVLESPVPALVGVQ 843
            L LW+TA +  S++ E IL  +  +LLEK +V+   ++G++S V  +L+ ++ PF+W+ +F+P++P K+MD L++PVP +VG+Q
Sbjct:  591 LSLWTTATICRSLSIETILALITGVLLEKQVVIVCPNLGVLSAVVLSLIPIIRPFQWQSLFLPILPGKMMDFLDAPVPFIVGLQ 674
[Close]
BLAST of mRNA_L-digitata_M_contig10126.1.1 vs. uniprot
Match: A0A0D2TFB5_GOSRA (UDENN domain-containing protein n=41 Tax=Gossypium TaxID=3633 RepID=A0A0D2TFB5_GOSRA)

HSP 1 Score: 71.2 bits (173), Expect = 7.850e-10
Identity = 34/85 (40.00%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:  589 SLDLWSTAVLFSSVAEEIILRALDALLLEKTLVVCGRDVGMVSIVATALLSLLDPFKWEGVFVPVVPLKLMDVLESPVPALVGVQ 843
            +L +W+TA +   ++ + IL  L  +LLEK +VV   ++G++S V  +++ L+ PF+W+ +F+PV+P++++D L++PVP LVGVQ
Sbjct:  593 ALSVWTTATICRVLSLDSILAVLAGVLLEKQVVVISPNLGVLSAVVLSIVPLIRPFQWQSLFLPVLPMRMLDFLDAPVPFLVGVQ 677
[Close]
BLAST of mRNA_L-digitata_M_contig10126.1.1 vs. uniprot
Match: A0A6A5ZDV0_9PLEO (DDENN domain-containing protein n=1 Tax=Lophiotrema nucula TaxID=690887 RepID=A0A6A5ZDV0_9PLEO)

HSP 1 Score: 71.2 bits (173), Expect = 8.610e-10
Identity = 36/111 (32.43%), Postives = 70/111 (63.06%), Query Frame = 1 
Query:  583 SPSLDLWSTAVLFSSVAEEIILRALDALLLEKTLVVCGRDVGMVSIVATALLSLLDPFKWEGVFVPVVPLKLMDVLESPVPALVGVQAPFDPVEYAFDGVLVLDLDARQAS 915
            S ++DL++   LF  ++   I+   + +L E  +++      M+ + + A+++LL PFKW GVF+PV+P +L+  +E+P P +VG++  ++PV+Y  D  +++DLD+   S
Sbjct:  514 SRNIDLYA---LFRCLSIPNIVTLFEFVLQESRIILLSSHTAMLHLASAAIVNLLYPFKWAGVFIPVLPSRLIQTIEAPCPYIVGIERRYEPVDYPEDDYVLVDLDSNTIS 621
[Close]
BLAST of mRNA_L-digitata_M_contig10126.1.1 vs. uniprot
Match: A0A2G9FZR5_9LAMI (UDENN domain-containing protein n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9FZR5_9LAMI)

HSP 1 Score: 70.9 bits (172), Expect = 9.220e-10
Identity = 35/85 (41.18%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  589 SLDLWSTAVLFSSVAEEIILRALDALLLEKTLVVCGRDVGMVSIVATALLSLLDPFKWEGVFVPVVPLKLMDVLESPVPALVGVQ 843
            SL LW+TA L   ++ E IL  +  +LLEK +VV   ++G++S V  +++ ++ PF+W+ +F+P++P K++D LE+PVP +VG+Q
Sbjct:  390 SLSLWTTATLCRVLSLESILALVTGVLLEKQVVVLCPNLGVLSAVVLSVIPIIRPFEWQSLFLPILPGKMLDFLEAPVPFIVGIQ 474
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10126.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L446_9PHAE1.880e-10859.83UDENN domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A4D9CNF6_9STRA1.190e-2238.42UDENN domain-containing protein n=2 Tax=Monodopsid... [more]
A0A482S8K5_9ARCH1.180e-1238.46DENN domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S3GU22_9STRA4.160e-1235.29Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3GQI8_9STRA1.990e-1038.83Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
D2UZH5_NAEGR4.240e-1030.18Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
UPI0008FEBA2E5.850e-1040.48uncharacterized protein LOC101261930 isoform X2 n=... [more]
A0A0D2TFB5_GOSRA7.850e-1040.00UDENN domain-containing protein n=41 Tax=Gossypium... [more]
A0A6A5ZDV0_9PLEO8.610e-1032.43DDENN domain-containing protein n=1 Tax=Lophiotrem... [more]
A0A2G9FZR5_9LAMI9.220e-1041.18UDENN domain-containing protein n=1 Tax=Handroanth... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10126contigL-digitata_M_contig10126:1057..8672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FZZ2
PFAMsDENN,uDENN
Model size1038
Max annot lvl2759|Eukaryota
KEGG koko:K20161
Hectar predicted targeting categoryother localisation
Exons8
Evalue1.72e-110
EggNOG OGsKOG3569@1|root,KOG3569@2759|Eukaryota
Ec32 ortholog descriptionDENN domain
Ec32 orthologEc-22_003540.1
DescriptionRab guanyl-nucleotide exchange factor activity
Cds size1038
COG categoryA
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10126.1.1prot_L-digitata_M_contig10126.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10126 1057..8672 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406616.2811446-CDS-L-digitata_M_contig10126:1056..11471682406616.2811446-CDS-L-digitata_M_contig10126:1056..1147Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10126 1057..1147 +
1682406616.2901874-CDS-L-digitata_M_contig10126:1177..12871682406616.2901874-CDS-L-digitata_M_contig10126:1177..1287Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10126 1178..1287 +
1682406616.2977471-CDS-L-digitata_M_contig10126:3345..35971682406616.2977471-CDS-L-digitata_M_contig10126:3345..3597Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10126 3346..3597 +
1682406616.3053324-CDS-L-digitata_M_contig10126:4372..44531682406616.3053324-CDS-L-digitata_M_contig10126:4372..4453Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10126 4373..4453 +
1682406616.3129184-CDS-L-digitata_M_contig10126:5439..56161682406616.3129184-CDS-L-digitata_M_contig10126:5439..5616Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10126 5440..5616 +
1682406616.3207495-CDS-L-digitata_M_contig10126:6932..69801682406616.3207495-CDS-L-digitata_M_contig10126:6932..6980Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10126 6933..6980 +
1682406616.3285537-CDS-L-digitata_M_contig10126:7891..80471682406616.3285537-CDS-L-digitata_M_contig10126:7891..8047Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10126 7892..8047 +
1682406616.337233-CDS-L-digitata_M_contig10126:8549..86721682406616.337233-CDS-L-digitata_M_contig10126:8549..8672Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10126 8550..8672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10126.1.1

>prot_L-digitata_M_contig10126.1.1 ID=prot_L-digitata_M_contig10126.1.1|Name=mRNA_L-digitata_M_contig10126.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=346bp
PGLTIRNRTGKRGGGGGAVGAAAAAVAEAAWGKEAARGGGDGKAWSVMME
QCYVMVSCHRNHPVMFKVLKAVVDAERSTRPGTAPTSSPPPPRPRSLPHS
GGRGVESGLGSLSPSVRGEGGGGGGAGTAKDSPRSASSFRTVAAAAAEEA
KVRHRRMLRDRFLHQVRTDRSCVGEGKKVSIHCPAFLRAPLELTSPSLDL
WSTAVLFSSVAEEIILRALDALLLEKTLVVCGRDVGMVSIVATALLSLLD
PFKWEGVFVPVVPLKLMDVLESPVPALVGVQAPFDPVEYAFDGVLVLDLD
ARQASGQLFMGGMDEKLPVSDDLVMALGKANTLRGRGRGAGAPVR*
back to top

mRNA from alignment at L-digitata_M_contig10126:1057..8672+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10126.1.1 ID=mRNA_L-digitata_M_contig10126.1.1|Name=mRNA_L-digitata_M_contig10126.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=7616bp|location=Sequence derived from alignment at L-digitata_M_contig10126:1057..8672+ (Laminaria digitata LdigPH10_18mv male)
CCGGGGTTGACGATAAGGAACCGGACGGGAAAACGCGGGGGTGGGGGGGG
GGCGGTTGGGGCGGCGGCGGCAGCGGTGGCAGAAGCCGCGTGTGTGACCC
CCCCCGTTGGGCCGAGAGAAGGGGGTAAGGAGGCAGCTAGGGGTGGGGGA
GATGGGAAGGCTTGGTCGGTGATGATGGAGCAGTGCTACGTGATGGTCAG
CTGTCACAGAAATCATCCTGTCATGTTCAAGGTGCGGAAATCGGCGGGGA
AATTCCACTACTAATATTGTTTTGTATTATTCACACCACGCCAAAAACGA
AGGGACCCGTGTTTTTACTGGGTAGCCCTATTGTTACTAGTAATCAGGAC
CAACGATGGACACCAAAAAACACAATTTACCCTATATGTTTACTACCCGG
TTTTGATCCTGATTACTACGAACTACGATGTTCTCCCGTTTCTGGCTGGC
GTTGGCTGACGCCGGGTTCTACGACCGAGGTTCTACGACCGGCGACCGAG
ATTGACATCTACGGAGATGATCCAATTCGACCAACGCAACACAGGTTGAC
GACAGTTGCAAACATCGTTTGCTTTTTTTCTGCGGAATTTCCTATGACGG
GGGACCGTACTATTAACAGGAAATTGGACCTACGGTACACAAAAAAAAAA
AATACCAGTCTGACAATAAATATAAGCAACTCTAAATACATAATATACAA
TGAGTAAGTTGTTTATATTTATTTTTATAGTGGTATATATTTACCTACAG
CGTTTTTAGTAGCAATATTTGGTCCTACAGCAGTGGTCCGTCCCTCTATA
GTGCCGGTACGGTATGTGCCAGCCGAAAATACCGGCACTATAGCGGCAAC
CGGCGGGATTTCCTATTACGGGGGACCGTACTATTAATAGGAAATTGGAC
CTACGGTACACACAAAAAAAAACTATATATTTACTTACCTACAGCATTTT
TACTGTAGTGCCGGTATGTGCCAGTATATTAATTATGTACTATTATATAC
GGTATGTGCCAGTATATACATATTATATACGGTATATAAATTGGTCCTAC
AGTAGTGGTCCGTCCCTCTATAGTGCCGGTACGGTATGTGCCAGCCGAAA
ATACCGGCACTATAGCGGCAACCGGCACTACTCCTCACACTGCCACACTG
GTTAAGCTCATACCAGGTATGTGCCAAGCGATTTCGCCGGCACTATGGCG
GCAACCGGCACTACTCCTCACACTGCCACACTGGTTAATCTCATACCAGG
TATGTGCCAAGCGATTTCACCGGCACTATAGCGGGCAACCGGCACTACTC
GACCGGCACTAATAGAGGGGCCACTACTGCTGTACTTACCATAGGTCCCC
CCGTAAACAGTAATAGCGACAGCCGTCTTATCTTCACTCCTATGGGTTTA
TTTGTCTGTGCGTACCCCCTTGCGCAGGTGTTTAATCCTTTTACCACTGC
GCTCATGTTTTGGGGACAAATTACATGAAATTAGAGTCAACATTTGTGAA
TGTGTACAGGCCATGCATATCTTGCAGATGATGGAAGGTCAGTGAAAATG
ATCTGTGCGATCTATCTGATATCGTTCAGGTGATGAAGATCCGTGAAAAT
GATCTGTGCGATCTATCTGATATCTCCCAGATTATGAGAATCCGTGAAAA
TTATCTGTAAGGTCTGATATCGTTCAGATGGAGATCCGTGAAAATGATCT
GTGCGATCTATCTGATATCGTTCAGATTATGAAGATCCGTGAAAACGATC
TGTTCGATCTATCTGATATCGTTCAGGTGATGAAGATCCGTGAAAATGAT
TTGTGCGATCTATCTCTGATATCGTTCAGATGATGAAGATCCGTGAAAAT
GATCTGGTCGATCTATCCGATATGTTTCAGATGATGAAGATCTGTGAAAA
TGATCTGTGCGATCTATCTGATATCGTTCAGATGATGAAGACCCGTGAAA
ATAATCTGTGCGGTCTATCTGATATCATGCAGATTATGAAGATCCGTGAA
AATGATCTGTGCAATCTACCAGGTATCTGATATCTTGCAGAGGATTTTAG
ATCCGTGAAAATTATCTGTGCGATCTATCTGATATCGTTCAGATGATGAA
GATCCGTGAAAATTACCTGTGCGGCCTATATCTGATATCGTTCAAATTAT
GAGGATCCGTGAAAATTATCTGTGCGACCTATGTCTGGTATCGTTCAGAT
GATGAAGATCGATGAAAATGATCTGTGCGATCTATCTGTACAACGATCTG
ATCTGTCCGGCCTGTGCGTTGCGTGTCCTCTCGCCACAGGTGCTTAAGGC
CGTCGTCGACGCCGAGCGATCTACCCGCCCGGGCACTGCCCCTACCTCCT
CGCCCCCCCCCCCGCGTCCCCGCTCCCTCCCGCACTCTGGAGGGCGCGGT
GTGGAGAGCGGTCTAGGCTCTCTGTCTCCTTCTGTGCGAGGGGAGGGCGG
AGGCGGTGGGGGGGCGGGGACGGCGAAGGATAGTCCCCGGTCGGCAAGCA
GTTTTCGAACTGTTGCTGCGGCGGCGGCGGAGGAGGCGAAGGTATTGGGT
TGGGTATTGGGTGTTGAGTGTTGGAAGGTACTCGGTGTTGGACGGTGTGT
TGGGTGTTGGAAGGTATTGTTTTGGAAGATATTGGGTGTTGGAAGGTATG
CGTGATGATTTTGTTGTGCGTTGTGTGTATTGTGTTAGGTGTTGTGTTGT
GTGGTGTTGTTGTGTGCTACGTGTTGTGTGTTGTGTGCTGTGTGTTGTGT
GTGTTGTTGTGTGTTGTGTTGTGTTGTTGTATGGTGTTGTCGTGTACTGT
GTTGCTGTATGGTGTTGTTGCGTGTTGTGTGCTGTGTGTTGTGTTGTGCG
ATGTTGTGAGGAGTTGGTGGAGGGGTGGGAGGGAGTTCCTCTCCAAACTG
CTGACGTACCCAGCATCTTCAAACGCCTTCTTTTCTTACTGAGACCTACA
GGAATGCACCGGAAACCCAATGTTGCCATTGGCCACATTCTGGCGCCTTC
CTCTCCTACTGAAACCCACTGAAATGCGACGAAACCCAATCTTGTCATTC
ACTCCACTCTCACACCCTCAAGTTGGTTTTCCACTGTTGCTTTCGTGCCT
GATCGTGTCGGGTGATCGGGGATCGGGCTACCACATGCAGTATATATCAT
CTTGAAAACGACTGTCGTCCCTACTGAAACCAACTGAAATGCAACGAAAG
CCAATCTTGACATTCACCCCATTCTCACACCCTGACGTTGGTTTTCCGTT
GTTGATTTCGTGCCTGCTCGGGTCGGGTGATCGGGGACATACACTACTGT
ATATATACACTATTAGGTGCGACACCGGAGGATGCTGCGGGACAGGTTCC
TGCACCAAGTCCGGACGGACAGGAGCTGTGTCGGAGAGGGAAAGAAGGTG
ACAGGCGGTAGGGGTAATGGGTAATGGAAACAATTTTTTTCGGCCGCAAC
TATTACTAGAGTAGTGGTCTCTCTATAGTGCCGGTATGCGCCAGCAACAT
GCCGGCATTATAGCGGCAACCGGCACTACTCCGCACACCACCACACTGGT
TAATCCCAGCTGTGCCAAGCGAGTTTACAGGCACTGTAGCGGCAACCGGC
ACTATAGCGGGACCACTACTGTCTGTACTGTAGTTGGGTGGCGAAGTAAA
CCAACTAACTGACTTTACAGTTGGGTGGCGAAGTAAACCAACTAACTAGT
CTTTTTTCATTAAAAAACACAATTCGAGCCACAAACGCGCCAGCAAGATA
CGAAGACACGGAGCTCCGCAAAACTATCGCACGCAGCTAACCCGTAATAC
CTTTACCTAGCAAACTAAAGCTAGCCGGCGACTTATTATTAATAATCGTA
TACTAATAGTTAGTACAGTAATACCATAATCAGCCAACTCACAGCTCTAG
TGAACTTATAAACGTGCGATCGAGTGTGATGTACTTTGGTGGATGCCAAG
GGGAGGGCAGAGGGTGGGTGGGGGCGCAGAGAGGAGGTTGGGCAGGTTTC
TCCTAGAATGGGGTACCGCGCGACACCCTGGAAAAAAAATGTATTGGAAA
ATGCTGTGTTTTAAGCCCGCCGCCGCCGTGTGATACTAGAATATGTGGTT
AGCTATAATTTGGATGGTTGCTTGGTTGGTTGGTCGCTGGACAGCTGGTG
GATGTGTTGGTTTCTTGACGGTTGGTTGTTTTTTGGTTGATTGGTTGGTT
GGGTGATTGGTACATTGGTTGTTTTTTTGGTCGGTTTGCCGACCGATTGG
GTGGGTGTTGTGTTGGTTTGTCTGACTATTGTATTATTGTTGACCATGTA
TTTTTGTTTGCTTGTCGTGTTTGTCCGCCCTGCTTTTTTGTTTGCTGTCG
TTTTGTTTTTTCCCGGACACTTGAACACCAAAGGTTTCTATTCATTGTCC
GGCGTTTTTGCGCGCGCCCCTGGAGCTGACGTCCCCGTCGCTGGACCTCT
GGTCGACGGCGGTTCTGTTTTCCTCGGTTGCGGAAGAGATTATTCTGCGC
GCGCTGGATGCGCTGCTGCTGGAGAAAACTCTCGTGGTCTGCGGCCGAGA
TGTTGGAATGGTAAGTATTGCACACATCAGACAGATCATCGATTCCCACT
TCATGATCTAGATCTTTCAGGGCAGATCTATTTGATGATGTTGGAAATGT
CAAGTATTGCAAACGGACAGATCATCGATTCCCACTTTCATGATCTAGAT
ATTTCACGGCAGATCTATTTCGTGATCTGTGTGATCTAGCTCTCTCATGT
TGCCGGGTGGGAGTCGTATTTATCTGCACGATCTCGTAGGACAGGTTTCC
TGGGTTGGATCTGTACACTATACAGATCCTGTAAAACGTCTCAGAACAGC
AGGTTAGGGTCTAGATGTTTTAGATCGTGATATGTCCGACGTGCGAAACG
TATTGGGAGGGCGTTGGGTGGGGGGCGGGAACGAGTTCCTGGTGATGCTA
GATGACCGAGGGGGTGATATTTACGGCTACGTAGACGACATATATATATG
CGTCTCTCGTGGTGTATATCACACCGTAGACCCGTAAAATCCCGTCGCTG
CAGCTCTGGGCACCATCATGGCAACCCTCACACGCCTCGAGATCGACACA
TAACCCTATCCCGAAACGCAAGGTCTGAAACCCGGGGATGACTCCTAAGC
GTCCCCGTAGTTGTGATTTTTATCCCGCACGGGAAAAAGTAGAGGAATTT
TGTGCCTAGGGAATGCACGGAGGTAGACACCAACGAGCACAACCTGGAGA
CAGGCAGTGCACCAAGTATCCGCAAAACTTCGGCAAAATGATAAATCAGG
CGAAATGTGTCCACAAAACGAAAGATTGGACTGTGCGAACTGTACGCACA
AACCAAAATGCGCTAGTTGGATTCACGCAACATGCTTTTTAGCGGACTGT
TGGGCACATCGGACGGATCACGATCTAGATCATCTAGATCATCTAGATCC
AATGTTTGCCGTTGTTGTGTGTTGTGCAAGAGCTGTATCATGCAGACCCC
ACCCGGCAAACATGTGTGCAAGAGCGATGTCGTACAGATCCCACCCGGCA
AACATGATGTGCAGATCATACTAATCAGGAATCTATCTGCCCCGATTGGT
CTAGATCGTGAAATAGGGATCTGATCTGTCCGATGTGTGAACTATTCGGC
ATGAGCTTCGGTTACGTTACATAGTTGAGTGGTTGGCGGCGGAAGAGATC
TGCAGTAGTGGGGTTCGGGTAGACAGGCCAACACTTTTCGCTGTCATGGC
CGTGACCGTGCCCCTGAAGACCCATGACAATGTTCTCTATCATACGCACC
CACCCACGCACCCACCCACCCACTCACCTCCGCGACCCGCAACGTGCTCT
GAAAATGAAACGCCTCCATTCTGCAGGTTTCTATTGTCGCTACCGCTCTT
CTATCGCTGCTCGACCCTTTCAAGGTGAGGCTCTTCTTGGGGGTAAATTA
CCCGTAACCCCTTTACAATTGCACCCACGTTTGTGAGAACACTACTTGGA
GTTCGCCCGGGACAATTTCTGCTGTATTATCGGTAGTCCATTTCCCACTG
CACCCATGTTTCGGGGACGGGAATTAAAATGGGAAAGTTTTGCAGTAGTA
GAAAGGTTCAAGGCTAAATACAAGGCGTAAGGTGGGCCCCTTCTCTGCCG
CGTGTTGCGTCGTATGGCCAGTATGAAAGACGAATCTGCGCCGGCAGTGC
ACCTATTAATACAGAGGACCCCTCCGATCACCGTCTCTACCACCCCAACC
TCCACTACACCACCGCCTATACCACTACCACAACTACCAACACCACGACC
ACCACTCCCACGCCGCAACTACCACTAACGCCGCCACCACCACCGCCACC
ACCACCACTTCCGCTATTACCACAATTACCACCGCCACCTCCACCACACA
CATTTACACGACACCACCACCACTACATCTACCACCACAATCACCACCAC
CACTACATCCCACACCACAACTATCACTGCGACCAACACTACCACCGCCA
CCACCAACACCGATACCGACACCACCACAACTACCGCCACTACCACCACC
ACCACCACCGCCACTACCACCAACACCGCCCCTACCACCACCGCTACCAC
CACCACTACTTCTTCTACCACCACGATTACCACCACCACCTCCACCACCA
CACACATTTACCGTAAGCACCACCTTACCTACCACCACCCCAGCAACACT
ACCACCGACACCTCCACCATCACACCACCGCCACCATCACGTACCACCAC
CACCACTTAACACCACCACCACTTAACACCACCCCCACCCCCACCCCCCT
CGCATTTCCCCTGTCCTGGTTTGTTTTCGTCAAAGTGGGAAGGCGTTTTC
GTCCCAGTCGTTCCCCTGAAACTGATGGACGTGCTGGAGAGTCCTGTCCC
CGCCTTGGTCGGGGTCCAAGCACCGTTTGACCCCGTCGAATACGCCTTCG
ACGGTGTGTTGGTACTCGACCTCGACGCGCGCCAGGCTTCGGTGAGTAGA
CTATACATCGAGGAGACGTTCCAGCGGCAACGACGACGGCAATGACAACG
GTAATACCAACGGTAATGTCAACGGCAATGCCAGTGGTAATGCCACCGGC
AATGCCGACCGTAATGTCAACGGCAATGACAACGGCAACGATAGCGGCAG
TGCCAACGGTACTACCAACGGCAGCGGCAATGCCAACGGTACTACCGACG
GTGGTGTAAACGGCAATGCCAGCAGTAATGCCACCGGCAATGCAAACCGT
AGTGTCAACGGCAACCGTAATATCAACGGTAATGTCAACGGCAACGCCGA
CGGCAATGACAACGGCAATATCAACGGTGATGCTAACGGTATTGCAACGG
TACTACCCACGATAGTTACAGCGCAAATACCAACGGTAAATGCCGACGGC
AATGCCAACGACAAGGCTTTGTTGTCTCATCAACGACTTTGTTTTCGCTG
CTGTTTGTTGTCAACGGTAATTGTATTTGCTCTTGTGCTCCAGGGACAGC
TTTTCATGGGAGGCATGGACGAGAAGCTTCCGGTATCGGACGACCTAGTG
ATGGCTCTGGGAAAGGCCAACACCCTCAGAGGGAGGGGACGTGGCGCAGG
AGCCCCGGTAAGATAA
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig10126:1057..8672+

>mRNA_L-digitata_M_contig10126.1.1 ID=mRNA_L-digitata_M_contig10126.1.1|Name=mRNA_L-digitata_M_contig10126.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=1038bp|location=Sequence derived from alignment at L-digitata_M_contig10126:1057..8672+ (Laminaria digitata LdigPH10_18mv male)
CCGGGGTTGACGATAAGGAACCGGACGGGAAAACGCGGGGGTGGGGGGGG
GGCGGTTGGGGCGGCGGCGGCAGCGGTGGCAGAAGCCGCGTGGGGTAAGG
AGGCAGCTAGGGGTGGGGGAGATGGGAAGGCTTGGTCGGTGATGATGGAG
CAGTGCTACGTGATGGTCAGCTGTCACAGAAATCATCCTGTCATGTTCAA
GGTGCTTAAGGCCGTCGTCGACGCCGAGCGATCTACCCGCCCGGGCACTG
CCCCTACCTCCTCGCCCCCCCCCCCGCGTCCCCGCTCCCTCCCGCACTCT
GGAGGGCGCGGTGTGGAGAGCGGTCTAGGCTCTCTGTCTCCTTCTGTGCG
AGGGGAGGGCGGAGGCGGTGGGGGGGCGGGGACGGCGAAGGATAGTCCCC
GGTCGGCAAGCAGTTTTCGAACTGTTGCTGCGGCGGCGGCGGAGGAGGCG
AAGGTGCGACACCGGAGGATGCTGCGGGACAGGTTCCTGCACCAAGTCCG
GACGGACAGGAGCTGTGTCGGAGAGGGAAAGAAGGTTTCTATTCATTGTC
CGGCGTTTTTGCGCGCGCCCCTGGAGCTGACGTCCCCGTCGCTGGACCTC
TGGTCGACGGCGGTTCTGTTTTCCTCGGTTGCGGAAGAGATTATTCTGCG
CGCGCTGGATGCGCTGCTGCTGGAGAAAACTCTCGTGGTCTGCGGCCGAG
ATGTTGGAATGGTTTCTATTGTCGCTACCGCTCTTCTATCGCTGCTCGAC
CCTTTCAAGTGGGAAGGCGTTTTCGTCCCAGTCGTTCCCCTGAAACTGAT
GGACGTGCTGGAGAGTCCTGTCCCCGCCTTGGTCGGGGTCCAAGCACCGT
TTGACCCCGTCGAATACGCCTTCGACGGTGTGTTGGTACTCGACCTCGAC
GCGCGCCAGGCTTCGGGACAGCTTTTCATGGGAGGCATGGACGAGAAGCT
TCCGGTATCGGACGACCTAGTGATGGCTCTGGGAAAGGCCAACACCCTCA
GAGGGAGGGGACGTGGCGCAGGAGCCCCGGTAAGATAA
back to top