mRNA_L-digitata_M_contig101254.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101254.1.1
Unique NamemRNA_L-digitata_M_contig101254.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig101254.1.1 vs. uniprot
Match: D7G8A0_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A0_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.120e-19
Identity = 45/55 (81.82%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 MLRPRSVLALTATASKAVVADICTTLRIP-PEGVRIGSWDRPNLDVRVLRTSSDD 162
            +LRPR VLALTATASKAVV DICTTLRIP  +GV++GSWDRPNLDVRVLR++SDD
Sbjct: 1508 LLRPRGVLALTATASKAVVEDICTTLRIPRKDGVKVGSWDRPNLDVRVLRSASDD 1562
[Close]
BLAST of mRNA_L-digitata_M_contig101254.1.1 vs. uniprot
Match: A0A6H5JFV2_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV2_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.960e-19
Identity = 45/55 (81.82%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 MLRPRSVLALTATASKAVVADICTTLRIPPE-GVRIGSWDRPNLDVRVLRTSSDD 162
            +LRPR VLALTATASKAVV DICTTLRIP + GV++GSWDRPNLDVRVLR++SDD
Sbjct: 1654 LLRPRGVLALTATASKAVVEDICTTLRIPRKHGVKVGSWDRPNLDVRVLRSASDD 1708
[Close]
BLAST of mRNA_L-digitata_M_contig101254.1.1 vs. uniprot
Match: A0A835Z8Q0_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Q0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.360e-10
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    4 LRPRSVLALTATASKAVVADICTTLRIPPEGVRIGSWDRPNLDVRVLRTSSD 159
            L  R VLALTATAS+AVV+++C +L IP  GVR+GSW RPNL V V R + D
Sbjct:  136 LNARCVLALTATASRAVVSELCASLSIPACGVRVGSWQRPNLRVAVQRVADD 187
[Close]
BLAST of mRNA_L-digitata_M_contig101254.1.1 vs. uniprot
Match: A0A7S3JR36_9STRA (DNA helicase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JR36_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.640e-7
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 MLRPRSVLALTATASKAVVADICTTLRIPPEG------VRIGSWDRPNLDVRVLR 147
            +LRPR+VLALTATAS+AVV DIC  L +  +       VRI SW R NLD+ V+R
Sbjct:  432 VLRPRAVLALTATASRAVVNDICQVLDLNSQSASEGGDVRIDSWRRSNLDLEVVR 486
[Close]
BLAST of mRNA_L-digitata_M_contig101254.1.1 vs. uniprot
Match: A0A7V1RCJ2_9BACT (ATP-dependent DNA helicase RecQ (Fragment) n=1 Tax=Chthonomonadales bacterium TaxID=2282151 RepID=A0A7V1RCJ2_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 1.970e-5
Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:    4 LRPRSVLALTATASKAVVADICTTLRIPPEGVRIGSWDRPNLDVRVLRTSSDDGQSF 174
            +R   VLALTATA++AVV DIC    IPPE   +  + RPNL++RV   ++ +  S 
Sbjct:  166 IRAERVLALTATATRAVVEDICRAFEIPPECAVVTGFYRPNLELRVSPVAAAERDSL 222
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101254.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G8A0_ECTSI2.120e-1981.82DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JFV2_9PHAE3.960e-1981.82DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A835Z8Q0_9STRA1.360e-1061.54DNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S3JR36_9STRA4.640e-756.36DNA helicase n=1 Tax=Aureoumbra lagunensis TaxID=4... [more]
A0A7V1RCJ2_9BACT1.970e-545.61ATP-dependent DNA helicase RecQ (Fragment) n=1 Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101254contigL-digitata_M_contig101254:113..286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G8A0
PFAMsDEAD,Drc1-Sld2,Helicase_C,SAP,zf-CCHC,zf-GRF
Model size174
Max annot lvl2759|Eukaryota
KEGG koko:K10730,ko:K12662
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.48e-20
EggNOG OGsCOG0514@1|root,KOG0351@2759|Eukaryota
EC3.6.4.12
Descriptionfour-way junction helicase activity
Cds size174
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03041,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406616.248854-CDS-L-digitata_M_contig101254:112..2861682406616.248854-CDS-L-digitata_M_contig101254:112..286Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101254 113..286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101254.1.1prot_L-digitata_M_contig101254.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101254 113..286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101254.1.1

>prot_L-digitata_M_contig101254.1.1 ID=prot_L-digitata_M_contig101254.1.1|Name=mRNA_L-digitata_M_contig101254.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=58bp
MLRPRSVLALTATASKAVVADICTTLRIPPEGVRIGSWDRPNLDVRVLRT
SSDDGQSF
back to top

mRNA from alignment at L-digitata_M_contig101254:113..286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101254.1.1 ID=mRNA_L-digitata_M_contig101254.1.1|Name=mRNA_L-digitata_M_contig101254.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=174bp|location=Sequence derived from alignment at L-digitata_M_contig101254:113..286+ (Laminaria digitata LdigPH10_18mv male)
ATGTTGCGCCCTAGGAGCGTGCTTGCTCTAACAGCTACCGCGAGCAAGGC
TGTGGTTGCGGACATCTGCACCACCTTGAGGATACCCCCGGAAGGAGTTA
GGATTGGCTCGTGGGATCGGCCCAACCTCGACGTGCGGGTCTTGAGAACT
TCCTCCGATGATGGTCAGTCGTTT
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig101254:113..286+

>mRNA_L-digitata_M_contig101254.1.1 ID=mRNA_L-digitata_M_contig101254.1.1|Name=mRNA_L-digitata_M_contig101254.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=174bp|location=Sequence derived from alignment at L-digitata_M_contig101254:113..286+ (Laminaria digitata LdigPH10_18mv male)
ATGTTGCGCCCTAGGAGCGTGCTTGCTCTAACAGCTACCGCGAGCAAGGC
TGTGGTTGCGGACATCTGCACCACCTTGAGGATACCCCCGGAAGGAGTTA
GGATTGGCTCGTGGGATCGGCCCAACCTCGACGTGCGGGTCTTGAGAACT
TCCTCCGATGATGGTCAGTCGTTT
back to top