mRNA_L-digitata_M_contig10125.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10125.1.1
Unique NamemRNA_L-digitata_M_contig10125.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig10125.1.1 vs. uniprot
Match: D7FPL8_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPL8_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 6.440e-28
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 QIDVNVTEAANEAKDNVKFLYTLERFIEPLYSGTATTIIDTLPALMNSIKMIHTIAR 171
            QIDVNVTEAANEAKDNVKFLYTLERFIEPLYSGTATTIIDTLPALMNSIKMIHTIAR
Sbjct:  298 QIDVNVTEAANEAKDNVKFLYTLERFIEPLYSGTATTIIDTLPALMNSIKMIHTIAR 354
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BLAST of mRNA_L-digitata_M_contig10125.1.1 vs. uniprot
Match: A0A6H5L5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A5_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 2.240e-27
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 QIDVNVTEAANEAKDNVKFLYTLERFIEPLYSGTATTIIDTLPALMNSIKMIHTIAR 171
            QIDVNVTEAANEAKDNVKFLYTLERFIEPLYSGTATTIIDTLPAL+NSIKMIHTIAR
Sbjct:   47 QIDVNVTEAANEAKDNVKFLYTLERFIEPLYSGTATTIIDTLPALINSIKMIHTIAR 103
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BLAST of mRNA_L-digitata_M_contig10125.1.1 vs. uniprot
Match: A0A7S4J3R3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J3R3_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.870e-26
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 QIDVNVTEAANEAKDNVKFLYTLERFIEPLYSGTATTIIDTLPALMNSIKMIHTIAR 171
            QID+ +TEAANEAKDNVK+LYTL+RFIEPLYSGTA TIID LPALMN+IKMIHTIAR
Sbjct:   48 QIDIGITEAANEAKDNVKYLYTLQRFIEPLYSGTAQTIIDGLPALMNAIKMIHTIAR 104
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BLAST of mRNA_L-digitata_M_contig10125.1.1 vs. uniprot
Match: F0YFN5_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFN5_AURAN)

HSP 1 Score: 104 bits (260), Expect = 8.270e-25
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 QIDVNVTEAANEAKDNVKFLYTLERFIEPLYSGTATTIIDTLPALMNSIKMIHTIAR 171
            Q DVN+TEAANEAKDNVK+L+TLERFIEPLY GTATTIIDTLPAL NSIKMIHTIAR
Sbjct:  178 QTDVNITEAANEAKDNVKYLFTLERFIEPLYKGTATTIIDTLPALTNSIKMIHTIAR 234
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BLAST of mRNA_L-digitata_M_contig10125.1.1 vs. uniprot
Match: A0A482S391_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S391_9ARCH)

HSP 1 Score: 104 bits (259), Expect = 1.130e-24
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 QIDVNVTEAANEAKDNVKFLYTLERFIEPLYSGTATTIIDTLPALMNSIKMIHTIAR 171
            QIDVN+TE+ANEAKDNVK+LYTLERFI+PLY+G A TIIDTLPALMNSIKMIHTIAR
Sbjct:  219 QIDVNITESANEAKDNVKYLYTLERFIDPLYTGNAETIIDTLPALMNSIKMIHTIAR 275
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BLAST of mRNA_L-digitata_M_contig10125.1.1 vs. uniprot
Match: A0A8J2SYB8_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SYB8_9STRA)

HSP 1 Score: 102 bits (255), Expect = 3.920e-24
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 QIDVNVTEAANEAKDNVKFLYTLERFIEPLYSGTATTIIDTLPALMNSIKMIHTIAR 171
            Q DVN+TEAANEAKDNVK+L+TLERFIEPLY GT TTI+DTLPAL NSIKMIHTIAR
Sbjct:  293 QTDVNITEAANEAKDNVKYLFTLERFIEPLYKGTTTTIVDTLPALTNSIKMIHTIAR 349
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BLAST of mRNA_L-digitata_M_contig10125.1.1 vs. uniprot
Match: A0A2R5GXI3_9STRA (Dynein heavy chain 5, axonemal n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GXI3_9STRA)

HSP 1 Score: 102 bits (254), Expect = 5.350e-24
Identity = 47/57 (82.46%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 QIDVNVTEAANEAKDNVKFLYTLERFIEPLYSGTATTIIDTLPALMNSIKMIHTIAR 171
            QID+N+TEAANEAKDNVK+L+TLE+FIEPLYSGT  +++DTLPALMNSIKMIHTIAR
Sbjct:  300 QIDINITEAANEAKDNVKYLFTLEKFIEPLYSGTPESVVDTLPALMNSIKMIHTIAR 356
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BLAST of mRNA_L-digitata_M_contig10125.1.1 vs. uniprot
Match: A0A2D4BRC3_PYTIN (Isoleucyl-tRNA synthetase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRC3_PYTIN)

HSP 1 Score: 100 bits (250), Expect = 1.860e-23
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 QIDVNVTEAANEAKDNVKFLYTLERFIEPLYSGTATTIIDTLPALMNSIKMIHTIAR 171
            QID N+TEAANEAKDNVK+L TLERFIEPLYSGT T++ID LPALMNS+KMIHTIAR
Sbjct:  341 QIDTNITEAANEAKDNVKYLATLERFIEPLYSGTPTSVIDALPALMNSVKMIHTIAR 397
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BLAST of mRNA_L-digitata_M_contig10125.1.1 vs. uniprot
Match: A0A662XKM8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XKM8_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 8.830e-23
Identity = 46/57 (80.70%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 QIDVNVTEAANEAKDNVKFLYTLERFIEPLYSGTATTIIDTLPALMNSIKMIHTIAR 171
            QID N+TEA+NEAKDNVK+L TLERFIEPLY+GT T+I+D+LPALMNS+KMIHTIAR
Sbjct:  358 QIDTNITEASNEAKDNVKYLATLERFIEPLYTGTPTSIVDSLPALMNSVKMIHTIAR 414
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BLAST of mRNA_L-digitata_M_contig10125.1.1 vs. uniprot
Match: A0A6A3HGX3_9STRA (DHC_N1 domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HGX3_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 9.460e-23
Identity = 44/57 (77.19%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 QIDVNVTEAANEAKDNVKFLYTLERFIEPLYSGTATTIIDTLPALMNSIKMIHTIAR 171
            QID+ +TEAANEAKDNV +L+TLE+FI PLY+GT ++IIDTLPALMNSIKMIH+IAR
Sbjct:   57 QIDIGITEAANEAKDNVMYLFTLEKFIIPLYNGTPSSIIDTLPALMNSIKMIHSIAR 113
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10125.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPL8_ECTSI6.440e-28100.00Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5L5A5_9PHAE2.240e-2798.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4J3R3_9STRA2.870e-2685.96Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
F0YFN5_AURAN8.270e-2589.47Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A482S391_9ARCH1.130e-2487.72Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A8J2SYB8_9STRA3.920e-2485.96Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A2R5GXI3_9STRA5.350e-2482.46Dynein heavy chain 5, axonemal n=1 Tax=Hondaea fer... [more]
A0A2D4BRC3_PYTIN1.860e-2384.21Isoleucyl-tRNA synthetase n=1 Tax=Pythium insidios... [more]
A0A662XKM8_9STRA8.830e-2380.70Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A6A3HGX3_9STRA9.460e-2377.19DHC_N1 domain-containing protein n=1 Tax=Phytophth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10125contigL-digitata_M_contig10125:5976..6149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FPL8
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N1,DHC_N2,Dynein_heavy,MT
Model size174
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005623,GO:0005929,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031514,GO:0034622,GO:0035082,GO:0036158,GO:0040011,GO:0042995,GO:0043226,GO:0043933,GO:0044085,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036
Exons1
Evalue1.06e-28
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size174
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406616.2242367-CDS-L-digitata_M_contig10125:5975..61491682406616.2242367-CDS-L-digitata_M_contig10125:5975..6149Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10125 5976..6149 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10125.1.1prot_L-digitata_M_contig10125.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10125 5976..6149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10125.1.1

>prot_L-digitata_M_contig10125.1.1 ID=prot_L-digitata_M_contig10125.1.1|Name=mRNA_L-digitata_M_contig10125.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=58bp
QIDVNVTEAANEAKDNVKFLYTLERFIEPLYSGTATTIIDTLPALMNSIK
MIHTIAR*
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mRNA from alignment at L-digitata_M_contig10125:5976..6149+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10125.1.1 ID=mRNA_L-digitata_M_contig10125.1.1|Name=mRNA_L-digitata_M_contig10125.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=174bp|location=Sequence derived from alignment at L-digitata_M_contig10125:5976..6149+ (Laminaria digitata LdigPH10_18mv male)
CAGATCGATGTGAATGTTACCGAGGCGGCTAACGAGGCCAAGGATAACGT
GAAGTTCCTCTACACCCTGGAGCGCTTCATCGAGCCCCTCTACAGCGGAA
CGGCGACGACGATCATCGACACGCTGCCGGCGCTGATGAACAGCATCAAG
ATGATACACACCATCGCAAGGTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig10125:5976..6149+

>mRNA_L-digitata_M_contig10125.1.1 ID=mRNA_L-digitata_M_contig10125.1.1|Name=mRNA_L-digitata_M_contig10125.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=174bp|location=Sequence derived from alignment at L-digitata_M_contig10125:5976..6149+ (Laminaria digitata LdigPH10_18mv male)
CAGATCGATGTGAATGTTACCGAGGCGGCTAACGAGGCCAAGGATAACGT
GAAGTTCCTCTACACCCTGGAGCGCTTCATCGAGCCCCTCTACAGCGGAA
CGGCGACGACGATCATCGACACGCTGCCGGCGCTGATGAACAGCATCAAG
ATGATACACACCATCGCAAGGTAG
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