mRNA_L-digitata_M_contig1012.6.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig1012.6.1
Unique NamemRNA_L-digitata_M_contig1012.6.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig1012.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig1012contigL-digitata_M_contig1012:12731..17718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1045
Hectar predicted targeting categoryother localisation
Exons4
Cds size843
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406615.3421302-CDS-L-digitata_M_contig1012:12730..128531682406615.3421302-CDS-L-digitata_M_contig1012:12730..12853Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1012 12731..12853 -
1682406615.349986-CDS-L-digitata_M_contig1012:15241..154301682406615.349986-CDS-L-digitata_M_contig1012:15241..15430Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1012 15242..15430 -
1682406615.359367-CDS-L-digitata_M_contig1012:16513..167201682406615.359367-CDS-L-digitata_M_contig1012:16513..16720Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1012 16514..16720 -
1682406615.3672392-CDS-L-digitata_M_contig1012:17192..175161682406615.3672392-CDS-L-digitata_M_contig1012:17192..17516Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1012 17193..17516 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406615.3764672-UTR-L-digitata_M_contig1012:17516..177181682406615.3764672-UTR-L-digitata_M_contig1012:17516..17718Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig1012 17517..17718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig1012.6.1prot_L-digitata_M_contig1012.6.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig1012 12731..17516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig1012.6.1

>prot_L-digitata_M_contig1012.6.1 ID=prot_L-digitata_M_contig1012.6.1|Name=mRNA_L-digitata_M_contig1012.6.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=281bp
MQSPSRSRTRHSLSDPRRPDSMPRLLHQSSAEGASPVRKHPRRQSLPARL
SPYRAEEFNGSVHRRGVSLSSSVSGAPGKIHGGGPIFRRGVPDHLTRGQK
SFYSCMVKICDVVSTQPLPMKVTSVTGHGEFFDRGDPVPRHATVVVRGVE
DPLVGRLKLDRLVCAALAERSHRRNDQMVAFVKKALEPNGGAVIGEAKAV
DRTVSGCGGSDSEVEGEASESWWSRLCDNKHLTKHDEFYRVRDGEPLGTV
ADGVEWALLETIRARNGHTGGVCAGTSPPPP
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mRNA from alignment at L-digitata_M_contig1012:12731..17718-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig1012.6.1 ID=mRNA_L-digitata_M_contig1012.6.1|Name=mRNA_L-digitata_M_contig1012.6.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=4988bp|location=Sequence derived from alignment at L-digitata_M_contig1012:12731..17718- (Laminaria digitata LdigPH10_18mv male)
GTTTGAGCGACCTCTCAACATCTCTTTTTGGCGTGTAACTAAACCACCGG
CAAGGGTGCATGGGTGGGCGGGCTGAAGGAAGGTTGGGACTAGAGAGAGG
CCAGGAGCACCCAAGGCGCTTGCTGGACCGGCCGGTCAACCGGCCCTGAG
CCCTGAACCCTGAGCCCTGAGCCCCTGCTACTGCAACGCTGCAAACACGA
CGATGCAGTCACCTTCGAGGTCAAGGACAAGGCATTCGCTCTCGGATCCT
CGAAGGCCGGATTCGATGCCCCGCCTGCTACATCAGAGTTCGGCAGAGGG
GGCTTCGCCCGTGAGGAAGCATCCCAGACGGCAGAGCCTCCCCGCTCGAC
TGTCGCCGTACCGGGCTGAGGAGTTCAATGGTAGTGTTCACCGCAGGGGC
GTGTCGCTGTCTTCATCTGTCTCTGGAGCCCCGGGCAAGATCCATGGAGG
AGGTCCTATCTTTCGGCGAGGTGTGCCTGATCATCTCACACGGGGCCAGA
AGTCTTTCTACTCTTGCATGGTGAAGGTACGATGATAATGCTCGTACGAC
TCGTACGTACTGCTGCTGCTTTGTCTAGATTGGTGGTCGACTACACTGAT
AGATAACGTACGCCAGGGTTGGCGACTCAGCGAAAAATTATGTAAGTTGA
CGAACGGGATGCAGCCTGTTGCTTCTGCCAGCCCCTCACCCAGTATCTTG
CTGTCTGGTACCAGGTACTCTTGTCAGCAGATCATGACACTCATATACTG
CCCAAAGAAAAAACCCATCAGACTCCCCCCCCGGAGCCCCCACTGTGAAG
GCAACGGGCACCTCTGACCTGGTGTATCATACGTAGCCGATACTCTCCAC
TACTCTCTCCACAACTGACACGAACGATTTAATCATTTTGACCAGTAGAC
ACTATTAATAGCACCACGCCTCGGCGCAATCTGTCTCACCCCCCGCCATC
TCTCAACCATTACCCCCTCCCCCACCCTCTCTCTACATCTTGGCGAAGAT
CTGCGACGTGGTCTCGACGCAGCCGCTGCCCATGAAGGTCACCTCGGTCA
CGGGCCACGGAGAGTTTTTCGACCGGGGTGACCCAGTCCCGAGGCACGCG
ACAGTTGTCGTCAGGGGGGTGGAGGACCCGCTGGTGGGGAGGCTGAAGCT
GGATCGACTCGTTTGCGCCGCTTTGGCTGAGAGGTCCCACCGGAGGAATG
ACCAGGTGGGCGATTTGTGCGACGAAGACAGCAACAGCTGCAGTAGTAGC
AGTAGCAGAACTATTAGTAGTGTAAGTATATCCCACAGCAGTAGTTGCAC
TTGTGGTGCAGCGCCAATCAATGGCATTGGCCTGCTTTTCCCTACGTGTT
CATAGATTAAGGTTGGATGGAGGCATGCCAGGGTATACATACAGATATTT
CTATATATACAAAATCAATACCGAGCGCTTATACAGCGAAGCTCGGACTT
GGAGGTTCCGAAAATTGCGTCTTGAATTTAGACTGGACTCCGGCAGCCTT
CACTCTGGGGGCTTTGGACTTGCTCTCTCGACCGGTCTCCTCGAGGGTCG
CGCTCGCCGGCCTCCGACGGGTCTCCTCCCGTGCGCGCAAACCTAGTAGT
CACGCGCCGCCGCCGAGCCAGCGACCCCGAACTGAGCGGATCTTGCGGAG
AACAGGACACACGGAGGTTCGAGGTTTTACTTTGAAAAAATCCGTCGCTC
TTGCGGAGACGGTGGGACATGACAACATGGGTACTTTCTTGTTAATACGG
TACACGGTATTACGTGGAGAAGAACGCCGAGGAGGAGGACAGGCTAGGAG
AGGAGAGGGGGGGATAGGGCGCACGAGGCCGCATGGCCTGCACGCGACAC
ATGTAATTCTGAAGCGATACTCTGTTCATCTGAGGCAGAACCGGAGTATT
GTGACAAACTCGGCACATACTGGTACTACAATAGCAGTAGCGCGAATAAA
ATCACGGTTCAGGTATGGTGAACGGCGCGGAGTGCGTGTGCGCGTTCAAA
GCGTGATACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTC
CTCCCCCCCGCCCCGCTCCGCTCGCCCACCCGCCGCCGCTTCGCCACCCC
TGCTCGCTTCTGGCGCAGCTGNNNNNNNNNNGGGGGAAAAAAGGCGCGGT
TTGGGTTTGGGGACGGGGGGGGGGGGCGGGGGGGGGTTCAAAGGGGGACA
CCCCCCCCCCCCCCCGCTCCCTCCGCTGTTCGTTCTACTCTGTACTGCCC
ATGTAATCATGCCGCCCATGGTTTGCCGATCCTCGCAGATGGTTGCGTTC
GTGAAGAAGGCGCTAGAACCGAACGGTGGAGCCGTAATCGGAGAAGCTAA
AGCTGTAGACAGGACTGTCAGTGGCTGCGGTGGCAGTGACAGTGAGGTGG
AGGGGGAGGCCAGTGAAAGCTGGTGGTCTAGACTCTGCGACAACAAGCAT
CTCACTAAGCACGACGAGTTCTATCGGGTGAGAGGAACAACTCCACCACC
CAATGATGAGCTCAACATGTTCAATCCCGCCTTGCACCGCTGTTTTTCAA
TGTGTCAAACGTGCGGCAGTACGCTGTGCGGGCGGCCCGTTGTTTGTCGT
ACATCAGTACATATATAGGTACCCGGGTATTATACGATACTGCTATATCA
TGCCCGGGAATTTAAGGACCGTTTGAGTAATCATATCAATACCTAAACGG
CCCTTACATTTCCGCACATTTATGGTACATGAGTTCGACACGGCTAACGC
GTTACAGGCCCGTAGTCGTTTCCGCGCAGAAGAGAAGACACAACTACAGT
AACTGTCCCCGCAAGCAAGGCCCTTTCATGATGGCTATTCAGTATGCGAT
GCCGTCGTGCCCGAGTGGTTAAGGGAAGTGGTTTGAAAGGAAACCCAGTG
TGATTTACGCGCAGGTTCGAGTTCTGCCGACGCCGCCAGTGTTATAGATG
TAGACTTGTAGGTTTACTATCGGTTAGTACACCTGACTGGGCGAAACACT
TTCGTGCCTCGACTAGCTGTCTTCTTCTGTTGTATTTTGACGAGTACTCG
GATTTCTAGTCTCTCACCAGCGAAGCGCTTTTTTTGGCCTTTGGTTGGCT
GCACACTTACTTAAGCAGTGCACTCGATACCCTTCGCGGCCTGAATAACC
TTGCTAGCTGGGCACACTTGGTCGGTAGTTAGCGGTCTACACCGTATACA
ATAATGTTTCGGCAGGTTCTCGCTTGAGTGCACGTCGTTGGGGAGGAACG
ACCCAGTTGCGCTCCCACCGAAGGGGATCCGTGTCTCCCGCGAGCGGCTG
CATGCCCCAAAGAGAGTGGCGCAGACCCTTGACCTTCTGGACATACTCGC
TCATATTCGACGCGCCCCGCAAGGGTAGCAACGAGAGCTGCGGAACGAGT
TTGAGGCTAAGGTGGAGGTAATTCGTTCTTGAGAGGCGTCATTGTCCTCG
ACCGGGGGCAACGGCGGAAACTGCGGCCCCGGGTTGAACACCGCGGCGGC
TCCGTGCTGAGCGGCGCCGGCGTACGTACGCGGAGGCGGCGGCGGTGGCG
GTGGCGGTGTAGCATCCCCGTATGCAGGTGGATGTGGCGGTGGTGCACCC
CCGTACGCAGGTGAAGGTGGTGGCGGTTGTGCGTTGCAGTACTGCGGTGG
TGGGGCGTTGCTGTATGTAGGTGGTGGTGCGATGCCGTGCAAGTAAGGTG
GTGCGTTGCCATAAGTACATGGTGCGTGGCCGTACGTAAGTGGTGGTGGT
GTAGGCGCGCCGGGGTGTTGTGCAGGTTGATGATGTACTGACCCGGAGTG
TCGTGCTGGGTGGTGCTGGACTGGCTCGTAGTCGAGGCGGTTGAGGCGGT
GATGCTGAGTGGTGAACTGGTTTGAAGACATCCTTCGACAGCGTCCCCTT
CCCCGTCGGTTGATCATGCTGTAGCAGCCGTGCCGCACCGAACCGTGCTG
CGCAACCTGCGAGCCGGACTCGGGACACACCTGCGCTGGCCCACGCTCCG
CGGCGGCCTAAACTTCGGGCGGTCCTTCCGGCTCGCAGGATGCGCAGCAC
GGTTCGGTACGGCACGGTTGGTACAGCATGATCAACCGACGGGTAAGGGG
ACGCTGTCGAAGGAGGTCTTCAAACCAGTTCACCACTCAGCAGCACCGCC
TCAACCGCCATGACTGCACGACGAACCAGTCCGGCACCCCTCAGCATGAC
ACTCCGGGTCATTACATCCTTACCCTGCACAATACCCCGGCGCGCCTATA
CCACCACCACCACCACCACCTACGTACGGCCACGCACCATGTACTTACGT
CGACGCACCACCTTCTTTCTACGGCATCGCACCATCACCTACATACGGCA
ACGCCTCACCACCACAGTACTGCAACGCACAACCGCCACCACCTCCACCT
GCGTACGGGGGTGCGCCACCGCCACATCCACCTGCATACGGGGGTGCTCC
ACCGCCACCGCCACCGCCATCGCCGCCGCCTCCGCGTACGTACGCCGGCG
CCGCTCAGCAAGGAGCCGCCGCGGCGTTCAACCCGGGGCCGCCGTTTCCG
CCGTTGCCCCCGGTCGGGGACAATCATGCCTCTCAAGAACGGATTAGGAC
GGCGTACCTCCACCTCAGCCTCAGCTTCGTTCCGTAGCTCTCGGGAGTTG
ATACAGGTTGGCTCGACTTTTGCACAAAGACGTAAGAAACCTGTATAATT
TTTACTGAAACTCGTGTACTAGAGCACACCCTACCTCACACAATATAATT
TGAACCTGACCCAAAATGTGAGCTGCTTCAGTGGTTTCGCGTATTATTTT
TTAAATGCATAATGTAGCGCCGTGGTTGCGTTCCTCATTTTAGCGTCGCC
GGCCCTCGAACGCAGGTGCGGGACGGGGAGCCGCTGGGAACTGTTGCGGA
TGGCGTTGAGTGGGCTCTGCTGGAAACGATTCGTGCTCGGAATGGCCACA
CCGGCGGAGTGTGTGCGGGCACCTCCCCCCCCCCCCCC
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Coding sequence (CDS) from alignment at L-digitata_M_contig1012:12731..17718-

>mRNA_L-digitata_M_contig1012.6.1 ID=mRNA_L-digitata_M_contig1012.6.1|Name=mRNA_L-digitata_M_contig1012.6.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=843bp|location=Sequence derived from alignment at L-digitata_M_contig1012:12731..17718- (Laminaria digitata LdigPH10_18mv male)
ATGCAGTCACCTTCGAGGTCAAGGACAAGGCATTCGCTCTCGGATCCTCG
AAGGCCGGATTCGATGCCCCGCCTGCTACATCAGAGTTCGGCAGAGGGGG
CTTCGCCCGTGAGGAAGCATCCCAGACGGCAGAGCCTCCCCGCTCGACTG
TCGCCGTACCGGGCTGAGGAGTTCAATGGTAGTGTTCACCGCAGGGGCGT
GTCGCTGTCTTCATCTGTCTCTGGAGCCCCGGGCAAGATCCATGGAGGAG
GTCCTATCTTTCGGCGAGGTGTGCCTGATCATCTCACACGGGGCCAGAAG
TCTTTCTACTCTTGCATGGTGAAGATCTGCGACGTGGTCTCGACGCAGCC
GCTGCCCATGAAGGTCACCTCGGTCACGGGCCACGGAGAGTTTTTCGACC
GGGGTGACCCAGTCCCGAGGCACGCGACAGTTGTCGTCAGGGGGGTGGAG
GACCCGCTGGTGGGGAGGCTGAAGCTGGATCGACTCGTTTGCGCCGCTTT
GGCTGAGAGGTCCCACCGGAGGAATGACCAGATGGTTGCGTTCGTGAAGA
AGGCGCTAGAACCGAACGGTGGAGCCGTAATCGGAGAAGCTAAAGCTGTA
GACAGGACTGTCAGTGGCTGCGGTGGCAGTGACAGTGAGGTGGAGGGGGA
GGCCAGTGAAAGCTGGTGGTCTAGACTCTGCGACAACAAGCATCTCACTA
AGCACGACGAGTTCTATCGGGTGCGGGACGGGGAGCCGCTGGGAACTGTT
GCGGATGGCGTTGAGTGGGCTCTGCTGGAAACGATTCGTGCTCGGAATGG
CCACACCGGCGGAGTGTGTGCGGGCACCTCCCCCCCCCCCCCC
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