mRNA_L-digitata_M_contig1012.5.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig1012.5.1
Unique NamemRNA_L-digitata_M_contig1012.5.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig1012.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig1012contigL-digitata_M_contig1012:10218..12050 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size651
Hectar predicted targeting categoryother localisation
Exons3
Cds size651
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406615.295086-CDS-L-digitata_M_contig1012:10217..102951682406615.295086-CDS-L-digitata_M_contig1012:10217..10295Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1012 10218..10295 -
1682406615.3048556-CDS-L-digitata_M_contig1012:11013..114061682406615.3048556-CDS-L-digitata_M_contig1012:11013..11406Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1012 11014..11406 -
1682406615.3137689-CDS-L-digitata_M_contig1012:11870..120501682406615.3137689-CDS-L-digitata_M_contig1012:11870..12050Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1012 11871..12050 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig1012.5.1prot_L-digitata_M_contig1012.5.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig1012 10218..12050 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig1012.5.1

>prot_L-digitata_M_contig1012.5.1 ID=prot_L-digitata_M_contig1012.5.1|Name=mRNA_L-digitata_M_contig1012.5.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=217bp
MRTSCIPCFDRLKEDVDILVKVARQWAGCLTWSRVSHGGWSYPGITTRLL
KQDLHKPQIEVCVNMKRIDGAGGAGGARRPGSDDSIQRNNKLPDGRNGWR
WHSRCQTEGGRQDYVGSVAAKRRDRRDDYAEVALWDPQSRSLYANLAGVF
GEEGMDAARRESAAAIAGRTELMARCYATLRVALQDIIEWKAPPCMLEAE
NRAAVRTSCLLWLNHTI
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mRNA from alignment at L-digitata_M_contig1012:10218..12050-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig1012.5.1 ID=mRNA_L-digitata_M_contig1012.5.1|Name=mRNA_L-digitata_M_contig1012.5.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=1833bp|location=Sequence derived from alignment at L-digitata_M_contig1012:10218..12050- (Laminaria digitata LdigPH10_18mv male)
ATGCGTACATCATGCATACCTTGTTTTGATAGGCTGAAAGAGGACGTGGA
CATACTGGTGAAGGTGGCCAGGCAGTGGGCGGGGTGCCTCACGTGGAGCC
GCGTCAGCCACGGAGGTTGGAGTTACCCGGGAATCACGACACGGCTGCTC
AAACAGGACCTGCACAAGCCGCAGATTGAGGTGGGGGCACAGCAGGCAGG
CAGGCCGGCAGGCGGGCGGTTACGATGGGTGGCACTTTTTTCCTGCCGTT
CCTTCTGAAAGCGATAAGTAGCAACGTGACCGTCCAGTTTTTGCTTATGG
CCCTCGGCAGGAGTTCTTGCCCAACATGAACTATTTTTGAACGTGAGCAG
GAAACATCGAGACAAACTCATGCCCATGCCGTATATTCGTAGACAGCTAC
TTAGTTAGCTGGCCGTGCTTGTAGCGTGGTGTACATCCTACCCGGCTTTG
ATGCATCGAGCGTCGAGAGGGTGCTGCGCTCGCTCTCACTGCTGAGAGCT
ATCATAGCTGGTAGGCGTGATAATTTCCTCTTGAGAAAACAGCAACAGCC
CCCGTGTCATGCCGCAACCCCCCCAGAGCGCAAATACGTGATGAACGCCT
AATATTTTTTCTCTTTTTTGGCGGCGGAACTGCCGACCAACCAGGTTTGC
GTCAACATGAAAAGGATCGATGGCGCGGGGGGAGCAGGAGGAGCACGACG
TCCCGGCAGCGATGATAGTATTCAGAGGAACAACAAACTTCCCGACGGGA
GGAACGGTTGGCGGTGGCACTCCCGCTGCCAGACTGAGGGGGGGAGGCAA
GACTACGTCGGCAGCGTCGCGGCCAAGCGTCGCGACCGTAGGGACGATTA
CGCGGAGGTGGCGTTGTGGGACCCCCAATCTCGCAGCCTCTACGCGAACC
TGGCGGGCGTGTTCGGGGAGGAGGGGATGGACGCAGCTCGAAGGGAATCG
GCGGCAGCGATCGCCGGGCGCACCGAGCTGATGGCTCGCTGCTATGCCAC
CCTTCGCGTCGCGCTCCAGGATATCATCGAGTGGAAGGTGGGCGGACGCG
GGGGCAGGGGAGGGGTGGGGGGTGCACGAATGGTCCTTCGCGAGAGCTGC
GGCTCTTTGCAAAGCTGTGGTGTGTTTTGTCACCAAGGACAGCAGCTACC
CCTTACGCAAAGAGCGAAACCGAAACGCCATGCTGGCAGTGAGTGTCATG
GCCTTGGGTATAACTTTGGCCGGGGCGAATTCCAGTCTTGAACGTCGTGT
GCGATCGACCTCCCTCCCCCCCACATGCCACCGATTTTATGGTACCGTAC
GAGTACAACACGCAAGGTAGCACACCCCCTTGAAAAAATTTCCACGCTGA
TTTTCTCGGCAACGGGGAGGGTGCAAACGCCGAGCGATATGTCTATGGAA
TGATCTCGACGACATGTTCCCAACGCCGCTGCTTTTGTTGTGTGCGGCCC
CCCTAGTTGCGGAGAAACTCGGTTCGGAAATTCGTTCCAGGGTAGGTGTG
TGTTATCTTGCGTGTTATATATACGGAATATCGTGTCCGAAATGTCGCTC
GAATGGTGAGGGGGGATCTGTTGGAGTATCGGCCGCCATCACAGTGCGCT
CGTCGTTTCTAATCCCATTCTCCTTTCCCGTGCCTTCCTCGCTCATCCCC
TATCCCCACGCTCCCGGATTTCGTAACGTATCGTATCGTATTGTATCGTA
TCGTGTCGTTTTTTGTTCGTTTTTCGTTTTTCTTTTTTTTTTTTTTTTGT
GGCAGGCGCCACCGTGCATGCTGGAGGCAGAGAACCGCGCTGCCGTGAGG
ACGTCTTGCCTCCTGTGGCTGAACCATACTATC
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Coding sequence (CDS) from alignment at L-digitata_M_contig1012:10218..12050-

>mRNA_L-digitata_M_contig1012.5.1 ID=mRNA_L-digitata_M_contig1012.5.1|Name=mRNA_L-digitata_M_contig1012.5.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=651bp|location=Sequence derived from alignment at L-digitata_M_contig1012:10218..12050- (Laminaria digitata LdigPH10_18mv male)
ATGCGTACATCATGCATACCTTGTTTTGATAGGCTGAAAGAGGACGTGGA
CATACTGGTGAAGGTGGCCAGGCAGTGGGCGGGGTGCCTCACGTGGAGCC
GCGTCAGCCACGGAGGTTGGAGTTACCCGGGAATCACGACACGGCTGCTC
AAACAGGACCTGCACAAGCCGCAGATTGAGGTTTGCGTCAACATGAAAAG
GATCGATGGCGCGGGGGGAGCAGGAGGAGCACGACGTCCCGGCAGCGATG
ATAGTATTCAGAGGAACAACAAACTTCCCGACGGGAGGAACGGTTGGCGG
TGGCACTCCCGCTGCCAGACTGAGGGGGGGAGGCAAGACTACGTCGGCAG
CGTCGCGGCCAAGCGTCGCGACCGTAGGGACGATTACGCGGAGGTGGCGT
TGTGGGACCCCCAATCTCGCAGCCTCTACGCGAACCTGGCGGGCGTGTTC
GGGGAGGAGGGGATGGACGCAGCTCGAAGGGAATCGGCGGCAGCGATCGC
CGGGCGCACCGAGCTGATGGCTCGCTGCTATGCCACCCTTCGCGTCGCGC
TCCAGGATATCATCGAGTGGAAGGCGCCACCGTGCATGCTGGAGGCAGAG
AACCGCGCTGCCGTGAGGACGTCTTGCCTCCTGTGGCTGAACCATACTAT
C
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