mRNA_L-digitata_M_contig101174.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101174.1.1
Unique NamemRNA_L-digitata_M_contig101174.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101174.1.1 vs. uniprot
Match: A0A6H5KUS9_9PHAE (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUS9_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 6.540e-22
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 1
Query:    1 WLQDDLHLHGVPATTLVEAKHPAFCYWDHKERKKLGSFQEFVRHDMV 141
            ++ DD +LHGVP TTLVEAKHPAFCYWDHKERKKLGSFQEFVRHDMV
Sbjct:  204 YILDDRNLHGVPPTTLVEAKHPAFCYWDHKERKKLGSFQEFVRHDMV 250          
BLAST of mRNA_L-digitata_M_contig101174.1.1 vs. uniprot
Match: A0A1V9YQN6_9STRA (Phosphatidylinositol kinase (PIK-F) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YQN6_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.700e-8
Identity = 28/47 (59.57%), Postives = 32/47 (68.09%), Query Frame = 1
Query:    1 WLQDDLHLHGVPATTLVEAKHPAFCYWDHKERKKLGSFQEFVRHDMV 141
            +L D  H  GVPATTL E KHPAF Y + +   K+GS QEFVRHD V
Sbjct:  266 YLLDKDHFAGVPATTLTEIKHPAFRYGEGEVVYKMGSLQEFVRHDDV 312          
BLAST of mRNA_L-digitata_M_contig101174.1.1 vs. uniprot
Match: T0QV05_SAPDV (Ubiquitin-like domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QV05_SAPDV)

HSP 1 Score: 56.2 bits (134), Expect = 5.960e-8
Identity = 27/44 (61.36%), Postives = 30/44 (68.18%), Query Frame = 1
Query:   10 DDLHLHGVPATTLVEAKHPAFCYWDHKERKKLGSFQEFVRHDMV 141
            D  H  GVPATTL E KHPAF Y + +   K+GS QEFVRHD V
Sbjct:  257 DKDHFAGVPATTLTEIKHPAFRYGEAEVVYKMGSLQEFVRHDDV 300          
BLAST of mRNA_L-digitata_M_contig101174.1.1 vs. uniprot
Match: A0A024GEE6_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GEE6_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 8.150e-8
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 1
Query:    1 WLQDDLHLHGVPATTLVEAKHPAFCYWDHKERK-KLGSFQEFVRHDMV 141
            +L D  H  GVPAT+LVEA+HP F Y D      K+GSFQEFV+HD V
Sbjct:  514 YLLDKNHFSGVPATSLVEARHPVFKYNDTARLHFKIGSFQEFVKHDDV 561          
BLAST of mRNA_L-digitata_M_contig101174.1.1 vs. uniprot
Match: A0A6G0WZ01_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZ01_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.110e-7
Identity = 27/47 (57.45%), Postives = 31/47 (65.96%), Query Frame = 1
Query:    1 WLQDDLHLHGVPATTLVEAKHPAFCYWDHKERKKLGSFQEFVRHDMV 141
            +L D  H  GVPATTL E KHPAF Y +     K+GS QEFVRH+ V
Sbjct:  215 YLLDKDHFAGVPATTLAEIKHPAFKYSEGDIEFKMGSLQEFVRHEDV 261          
BLAST of mRNA_L-digitata_M_contig101174.1.1 vs. uniprot
Match: F0WL98_9STRA (Phosphatidylinositol kinase (PIKF) putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WL98_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.110e-7
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 1
Query:    1 WLQDDLHLHGVPATTLVEAKHPAFCYWDHKERK-KLGSFQEFVRHDMV 141
            +L D  H  GVPAT+LVEA+HP F Y D      K+GSFQEFV+HD V
Sbjct:  264 YLLDKDHFSGVPATSLVEARHPVFKYDDTTRLHFKIGSFQEFVKHDDV 311          
BLAST of mRNA_L-digitata_M_contig101174.1.1 vs. uniprot
Match: A0A5D6XI28_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XI28_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.850e-7
Identity = 28/48 (58.33%), Postives = 32/48 (66.67%), Query Frame = 1
Query:    1 WLQDDLHLHGVPATTLVEAKHPAFCYWDHKERK-KLGSFQEFVRHDMV 141
            +L D  H  GVPAT+LVEA+HP F Y D      K+GS QEFVRHD V
Sbjct:  239 YLLDKDHFAGVPATSLVEARHPVFKYGDAGAHHFKVGSLQEFVRHDDV 286          
BLAST of mRNA_L-digitata_M_contig101174.1.1 vs. uniprot
Match: K3XAU6_GLOUD (Ubiquitin-like domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAU6_GLOUD)

HSP 1 Score: 54.3 bits (129), Expect = 2.850e-7
Identity = 28/48 (58.33%), Postives = 32/48 (66.67%), Query Frame = 1
Query:    1 WLQDDLHLHGVPATTLVEAKHPAFCYWDHKERK-KLGSFQEFVRHDMV 141
            +L D  H  GVPAT+LVEA+HP F Y D      K+GS QEFVRHD V
Sbjct:  258 YLLDKDHFAGVPATSLVEARHPVFKYGDGGPHHFKVGSLQEFVRHDDV 305          
BLAST of mRNA_L-digitata_M_contig101174.1.1 vs. uniprot
Match: A0A485L7W3_9STRA (Aste57867_17378 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7W3_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.330e-7
Identity = 29/48 (60.42%), Postives = 31/48 (64.58%), Query Frame = 1
Query:    1 WLQDDLHLHGVPATTLVEAKHPAFCYWDHKERK-KLGSFQEFVRHDMV 141
            +L D  H  GVPATTL E KHPAF Y D      K+GS QEFVRHD V
Sbjct:  217 YLLDKDHFAGVPATTLAEVKHPAFKYSDGGGVVYKMGSLQEFVRHDDV 264          
BLAST of mRNA_L-digitata_M_contig101174.1.1 vs. uniprot
Match: A0A2D4BF56_PYTIN (Phosphatidylinositol 3 and 4-kinase-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BF56_PYTIN)

HSP 1 Score: 52.8 bits (125), Expect = 9.930e-7
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 1
Query:    1 WLQDDLHLHGVPATTLVEAKHPAFCYWDH-KERKKLGSFQEFVRHDMV 141
            +L D  H  GVPAT+LVEA+HP F Y +  K   K+GS QEFV+HD V
Sbjct:  263 YLLDRDHFAGVPATSLVEARHPVFKYGECIKMHFKMGSLQEFVKHDDV 310          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101174.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUS9_9PHAE6.540e-2287.23Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
A0A1V9YQN6_9STRA1.700e-859.57Phosphatidylinositol kinase (PIK-F) n=1 Tax=Achlya... [more]
T0QV05_SAPDV5.960e-861.36Ubiquitin-like domain-containing protein n=2 Tax=S... [more]
A0A024GEE6_9STRA8.150e-858.33Ubiquitin-like domain-containing protein n=1 Tax=A... [more]
A0A6G0WZ01_9STRA1.110e-757.45Ubiquitin-like domain-containing protein n=1 Tax=A... [more]
F0WL98_9STRA1.110e-758.33Phosphatidylinositol kinase (PIKF) putative n=1 Ta... [more]
A0A5D6XI28_9STRA2.850e-758.33Ubiquitin-like domain-containing protein n=1 Tax=P... [more]
K3XAU6_GLOUD2.850e-758.33Ubiquitin-like domain-containing protein n=1 Tax=G... [more]
A0A485L7W3_9STRA5.330e-760.42Aste57867_17378 protein n=1 Tax=Aphanomyces stella... [more]
A0A2D4BF56_PYTIN9.930e-756.25Phosphatidylinositol 3 and 4-kinase-like protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101174contigL-digitata_M_contig101174:490..630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FS67
PFAMsPI3_PI4_kinase,ubiquitin
Model size141
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.07e-22
EggNOG OGsKOG2381@1|root,KOG2381@2759|Eukaryota
Description1-phosphatidylinositol 4-kinase activity
Cds size141
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406615.054297-CDS-L-digitata_M_contig101174:489..6301682406615.054297-CDS-L-digitata_M_contig101174:489..630Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101174 490..630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101174.1.1prot_L-digitata_M_contig101174.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101174 490..630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101174.1.1

>prot_L-digitata_M_contig101174.1.1 ID=prot_L-digitata_M_contig101174.1.1|Name=mRNA_L-digitata_M_contig101174.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=47bp
WLQDDLHLHGVPATTLVEAKHPAFCYWDHKERKKLGSFQEFVRHDMV
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mRNA from alignment at L-digitata_M_contig101174:490..630-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101174.1.1 ID=mRNA_L-digitata_M_contig101174.1.1|Name=mRNA_L-digitata_M_contig101174.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=141bp|location=Sequence derived from alignment at L-digitata_M_contig101174:490..630- (Laminaria digitata LdigPH10_18mv male)
TGGCTGCAGGACGACTTGCACCTGCACGGAGTGCCGGCGACGACCCTCGT GGAGGCCAAGCATCCGGCGTTCTGCTACTGGGACCACAAGGAGCGGAAGA AGCTCGGCAGCTTCCAAGAGTTCGTCCGGCACGATATGGTG
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Coding sequence (CDS) from alignment at L-digitata_M_contig101174:490..630-

>mRNA_L-digitata_M_contig101174.1.1 ID=mRNA_L-digitata_M_contig101174.1.1|Name=mRNA_L-digitata_M_contig101174.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=141bp|location=Sequence derived from alignment at L-digitata_M_contig101174:490..630- (Laminaria digitata LdigPH10_18mv male)
TGGCTGCAGGACGACTTGCACCTGCACGGAGTGCCGGCGACGACCCTCGT
GGAGGCCAAGCATCCGGCGTTCTGCTACTGGGACCACAAGGAGCGGAAGA
AGCTCGGCAGCTTCCAAGAGTTCGTCCGGCACGATATGGTG
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