mRNA_L-digitata_M_contig101170.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101170.1.1
Unique NamemRNA_L-digitata_M_contig101170.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101170.1.1 vs. uniprot
Match: A0A8K1C9T9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C9T9_PYTOL)

HSP 1 Score: 64.3 bits (155), Expect = 5.100e-11
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 QEKCPGVIVVGVDPVGSILALPESLNDAGRLCSYKV 108
            +EKCPGVIVVGVDP GSILALP+SLND  RL SYKV
Sbjct:  207 KEKCPGVIVVGVDPEGSILALPDSLNDKNRLKSYKV 242
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BLAST of mRNA_L-digitata_M_contig101170.1.1 vs. uniprot
Match: K3W6D5_GLOUD (Cystathionine beta-synthase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6D5_GLOUD)

HSP 1 Score: 63.9 bits (154), Expect = 6.970e-11
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 QEKCPGVIVVGVDPVGSILALPESLNDAGRLCSYKV 108
            +EKCPGVI+VGVDP GSILALP+SLND  RL SYKV
Sbjct:  210 KEKCPGVIIVGVDPEGSILALPDSLNDKNRLQSYKV 245
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BLAST of mRNA_L-digitata_M_contig101170.1.1 vs. uniprot
Match: D8LKG4_ECTSI (Cystathionine beta-synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG4_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 9.510e-11
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 QEKCPGVIVVGVDPVGSILALPESLNDAGRLCSYKV 108
            +E+CP V++VGVDPVGSILALPE LND GRL SYKV
Sbjct:  267 KERCPDVVLVGVDPVGSILALPEHLNDEGRLSSYKV 302
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BLAST of mRNA_L-digitata_M_contig101170.1.1 vs. uniprot
Match: A0A662X795_9STRA (Cystathionine beta-synthase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X795_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.320e-10
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 QEKCPGVIVVGVDPVGSILALPESLNDAGRLCSYKV 108
            +EKCPGVIVVGVDP GSILA P+SLND  RL SYKV
Sbjct:  161 KEKCPGVIVVGVDPEGSILAQPDSLNDKNRLQSYKV 196
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BLAST of mRNA_L-digitata_M_contig101170.1.1 vs. uniprot
Match: A0A024TSH5_9STRA (Cystathionine beta-synthase n=10 Tax=Aphanomyces TaxID=100860 RepID=A0A024TSH5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 6.210e-10
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 QEKCPGVIVVGVDPVGSILALPESLNDAGRLCSYKV 108
            +EK P +IVVGVDPVGSILA PESLND  RLC YKV
Sbjct:  211 KEKIPNLIVVGVDPVGSILAQPESLNDKNRLCGYKV 246
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BLAST of mRNA_L-digitata_M_contig101170.1.1 vs. uniprot
Match: A0A397F1G9_9STRA (PALP domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F1G9_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 7.180e-10
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 QEKCPGVIVVGVDPVGSILALPESLNDAGRLCSYKV 108
            +EK P +IVVGVDPVGSILA PE+LND  RLC YKV
Sbjct:  212 KEKLPNIIVVGVDPVGSILAQPEALNDHNRLCGYKV 247
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BLAST of mRNA_L-digitata_M_contig101170.1.1 vs. uniprot
Match: A0A835Z791_9STRA (Cystathionine beta-synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z791_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 8.500e-10
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 QEKCPGVIVVGVDPVGSILALPESLNDAGRLCSYKV 108
            +E+CP VI++GVDPVGSILA PE+LND GRL SYKV
Sbjct:  181 RERCPEVIIIGVDPVGSILAEPEALNDDGRLQSYKV 216
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BLAST of mRNA_L-digitata_M_contig101170.1.1 vs. uniprot
Match: A0A397EGX0_9STRA (CBS domain-containing protein (Fragment) n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EGX0_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 9.050e-10
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 QEKCPGVIVVGVDPVGSILALPESLNDAGRLCSYKV 108
            +EK P +IVVGVDPVGSILA PE+LND  RLC YKV
Sbjct:    6 KEKLPNIIVVGVDPVGSILAQPEALNDHNRLCGYKV 41
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BLAST of mRNA_L-digitata_M_contig101170.1.1 vs. uniprot
Match: A0A3R7AJ36_9STRA (FYVE domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7AJ36_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.160e-9
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 QEKCPGVIVVGVDPVGSILALPESLNDAGRLCSYKV 108
            +EK P +IVVGVDPVGSILA PE+LND  RLC YKV
Sbjct:  188 KEKLPNIIVVGVDPVGSILAQPEALNDHNRLCGYKV 223
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BLAST of mRNA_L-digitata_M_contig101170.1.1 vs. uniprot
Match: A0A3M6VE71_9STRA (Cystathionine beta-synthase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VE71_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.160e-9
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 QEKCPGVIVVGVDPVGSILALPESLNDAGRLCSYKV 108
            +EKCP VIVVGVDP GSILA PESLND  RL SYKV
Sbjct:  238 KEKCPDVIVVGVDPEGSILAQPESLNDKNRLKSYKV 273
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101170.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8K1C9T9_PYTOL5.100e-1183.33Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3W6D5_GLOUD6.970e-1180.56Cystathionine beta-synthase n=1 Tax=Globisporangiu... [more]
D8LKG4_ECTSI9.510e-1177.78Cystathionine beta-synthase n=1 Tax=Ectocarpus sil... [more]
A0A662X795_9STRA3.320e-1080.56Cystathionine beta-synthase n=2 Tax=Nothophytophth... [more]
A0A024TSH5_9STRA6.210e-1077.78Cystathionine beta-synthase n=10 Tax=Aphanomyces T... [more]
A0A397F1G9_9STRA7.180e-1075.00PALP domain-containing protein (Fragment) n=2 Tax=... [more]
A0A835Z791_9STRA8.500e-1075.00Cystathionine beta-synthase n=1 Tax=Tribonema minu... [more]
A0A397EGX0_9STRA9.050e-1075.00CBS domain-containing protein (Fragment) n=4 Tax=A... [more]
A0A3R7AJ36_9STRA1.160e-975.00FYVE domain-containing protein (Fragment) n=2 Tax=... [more]
A0A3M6VE71_9STRA1.160e-980.56Cystathionine beta-synthase n=1 Tax=Peronospora ef... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101170contigL-digitata_M_contig101170:721..828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog36331.EPrPI00000017834
PFAMsCBS,PALP
Model size108
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.36e-12
EggNOG OGsCOG0031@1|root,KOG1252@2759|Eukaryota,1MG0Q@121069|Pythiales
DescriptionCystathionine beta-synthase. Source PGD
Cds size108
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406615.0299888-CDS-L-digitata_M_contig101170:720..8281682406615.0299888-CDS-L-digitata_M_contig101170:720..828Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101170 721..828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101170.1.1prot_L-digitata_M_contig101170.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101170 721..828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101170.1.1

>prot_L-digitata_M_contig101170.1.1 ID=prot_L-digitata_M_contig101170.1.1|Name=mRNA_L-digitata_M_contig101170.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=36bp
QEKCPGVIVVGVDPVGSILALPESLNDAGRLCSYKV
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mRNA from alignment at L-digitata_M_contig101170:721..828+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101170.1.1 ID=mRNA_L-digitata_M_contig101170.1.1|Name=mRNA_L-digitata_M_contig101170.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=108bp|location=Sequence derived from alignment at L-digitata_M_contig101170:721..828+ (Laminaria digitata LdigPH10_18mv male)
CAGGAGAAATGCCCAGGCGTAATCGTTGTGGGAGTGGATCCCGTCGGCTC
CATCCTGGCCCTGCCGGAGAGCCTCAACGACGCGGGACGATTGTGTTCTT
ACAAGGTA
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Coding sequence (CDS) from alignment at L-digitata_M_contig101170:721..828+

>mRNA_L-digitata_M_contig101170.1.1 ID=mRNA_L-digitata_M_contig101170.1.1|Name=mRNA_L-digitata_M_contig101170.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=108bp|location=Sequence derived from alignment at L-digitata_M_contig101170:721..828+ (Laminaria digitata LdigPH10_18mv male)
CAGGAGAAATGCCCAGGCGTAATCGTTGTGGGAGTGGATCCCGTCGGCTC
CATCCTGGCCCTGCCGGAGAGCCTCAACGACGCGGGACGATTGTGTTCTT
ACAAGGTA
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