mRNA_L-digitata_M_contig101165.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101165.1.1
Unique NamemRNA_L-digitata_M_contig101165.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101165.1.1 vs. uniprot
Match: D7FR99_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR99_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 4.540e-24
Identity = 52/56 (92.86%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 LEDTRKSSEKLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAENMRTGSTMAEK 168
            LEDT+++SEKLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAENMRTG+TMAEK
Sbjct:   82 LEDTKRNSEKLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAENMRTGNTMAEK 137
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BLAST of mRNA_L-digitata_M_contig101165.1.1 vs. uniprot
Match: A0A7S2FIF4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FIF4_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 4.290e-22
Identity = 48/56 (85.71%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 LEDTRKSSEKLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAENMRTGSTMAEK 168
            +++T+K SEKLIDTLKAVLEETDIRIA+LKK+AYEFKRDIVVGAENMRTG TMAEK
Sbjct:   45 MDETKKHSEKLIDTLKAVLEETDIRIAELKKDAYEFKRDIVVGAENMRTGKTMAEK 100
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BLAST of mRNA_L-digitata_M_contig101165.1.1 vs. uniprot
Match: F0YL53_AURAN (DUF4201 domain-containing protein (Fragment) n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL53_AURAN)

HSP 1 Score: 90.9 bits (224), Expect = 8.670e-21
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:    7 DTRKSSEKLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAENMRTGSTMAEK 168
            D +K+SEKL DTL+AVLEETDIRIA+LKK+AYEFKRDIVVGAENMRTG TMAEK
Sbjct:   24 DNKKASEKLADTLRAVLEETDIRIAELKKDAYEFKRDIVVGAENMRTGKTMAEK 77
[Close]
BLAST of mRNA_L-digitata_M_contig101165.1.1 vs. uniprot
Match: A0A3F2RQ37_9STRA (DUF4201 domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RQ37_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 9.300e-21
Identity = 46/56 (82.14%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 LEDTRKSSEKLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAENMRTGSTMAEK 168
            LE+T++SSE+LIDTL+AVLEETDIRIA+LKK+AYEFKRDIVVGAEN RTG T+AEK
Sbjct:   91 LEETKRSSERLIDTLRAVLEETDIRIAELKKDAYEFKRDIVVGAENFRTGKTIAEK 146
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BLAST of mRNA_L-digitata_M_contig101165.1.1 vs. uniprot
Match: H3GA29_PHYRM (DUF4201 domain-containing protein n=19 Tax=Phytophthora TaxID=4783 RepID=H3GA29_PHYRM)

HSP 1 Score: 91.7 bits (226), Expect = 9.850e-21
Identity = 46/56 (82.14%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 LEDTRKSSEKLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAENMRTGSTMAEK 168
            LE+T++SSE+LIDTL+AVLEETDIRIA+LKK+AYEFKRDIVVGAEN RTG T+AEK
Sbjct:   89 LEETKRSSERLIDTLRAVLEETDIRIAELKKDAYEFKRDIVVGAENFRTGKTIAEK 144
[Close]
BLAST of mRNA_L-digitata_M_contig101165.1.1 vs. uniprot
Match: A0A0N7L787_PLAHL (DUF4201 domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L787_PLAHL)

HSP 1 Score: 91.7 bits (226), Expect = 1.010e-20
Identity = 46/56 (82.14%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 LEDTRKSSEKLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAENMRTGSTMAEK 168
            LE+T++SSE+LIDTL+AVLEETDIRIA+LKK+AYEFKRDIVVGAEN RTG T+AEK
Sbjct:   91 LEETKRSSERLIDTLRAVLEETDIRIAELKKDAYEFKRDIVVGAENFRTGKTIAEK 146
[Close]
BLAST of mRNA_L-digitata_M_contig101165.1.1 vs. uniprot
Match: A0A662WQ95_9STRA (DUF4201 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WQ95_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.030e-20
Identity = 46/56 (82.14%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 LEDTRKSSEKLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAENMRTGSTMAEK 168
            LE+T++SSE+LIDTL+AVLEETDIRIA+LKK+AYEFKRDIVVGAEN RTG T+AEK
Sbjct:   89 LEETKRSSERLIDTLRAVLEETDIRIAELKKDAYEFKRDIVVGAENFRTGKTIAEK 144
[Close]
BLAST of mRNA_L-digitata_M_contig101165.1.1 vs. uniprot
Match: A0A5D6Y8W9_9STRA (DUF4201 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8W9_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.110e-20
Identity = 46/56 (82.14%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 LEDTRKSSEKLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAENMRTGSTMAEK 168
            LE+TR++SE+LIDTL+AVLEETDIRIA+LKK+AYEFKRDIVVGAEN RTG T+AEK
Sbjct:   98 LEETRRTSERLIDTLRAVLEETDIRIAELKKDAYEFKRDIVVGAENFRTGKTIAEK 153
[Close]
BLAST of mRNA_L-digitata_M_contig101165.1.1 vs. uniprot
Match: A0A2D4BW04_PYTIN (DUF4201 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BW04_PYTIN)

HSP 1 Score: 90.5 bits (223), Expect = 1.290e-20
Identity = 45/56 (80.36%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 LEDTRKSSEKLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAENMRTGSTMAEK 168
            LE+T+++SE+LIDTL+AVLEETDIRIA+LKK+AYEFKRDIVVGAEN RTG T+AEK
Sbjct:   30 LEETKRTSERLIDTLRAVLEETDIRIAELKKDAYEFKRDIVVGAENFRTGKTIAEK 85
[Close]
BLAST of mRNA_L-digitata_M_contig101165.1.1 vs. uniprot
Match: K3WVN1_GLOUD (DUF4201 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVN1_GLOUD)

HSP 1 Score: 91.3 bits (225), Expect = 1.400e-20
Identity = 45/56 (80.36%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 LEDTRKSSEKLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAENMRTGSTMAEK 168
            LE+TR++SE+L+DTL+AVLEETDIRIA+LKK+AYEFKRDIVVGAEN RTG T+AEK
Sbjct:   89 LEETRRTSERLVDTLRAVLEETDIRIAELKKDAYEFKRDIVVGAENFRTGKTIAEK 144
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101165.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR99_ECTSI4.540e-2492.86Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A7S2FIF4_9STRA4.290e-2285.71Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0YL53_AURAN8.670e-2185.19DUF4201 domain-containing protein (Fragment) n=2 T... [more]
A0A3F2RQ37_9STRA9.300e-2182.14DUF4201 domain-containing protein n=1 Tax=Phytopht... [more]
H3GA29_PHYRM9.850e-2182.14DUF4201 domain-containing protein n=19 Tax=Phytoph... [more]
A0A0N7L787_PLAHL1.010e-2082.14DUF4201 domain-containing protein n=1 Tax=Plasmopa... [more]
A0A662WQ95_9STRA1.030e-2082.14DUF4201 domain-containing protein n=2 Tax=Nothophy... [more]
A0A5D6Y8W9_9STRA1.110e-2082.14DUF4201 domain-containing protein n=1 Tax=Pythium ... [more]
A0A2D4BW04_PYTIN1.290e-2080.36DUF4201 domain-containing protein n=1 Tax=Pythium ... [more]
K3WVN1_GLOUD1.400e-2080.36DUF4201 domain-containing protein n=1 Tax=Globispo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101165contigL-digitata_M_contig101165:477..644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FR99
Preferred nameCCDC113
PFAMsDUF4201
Model size168
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006996,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031974,GO:0031981,GO:0032991,GO:0034451,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044782,GO:0060271,GO:0070013,GO:0070925,GO:0071840,GO:0120031,GO:0120036
Exons1
Evalue7.45e-25
EggNOG OGs28MPJ@1|root,2QU7J@2759|Eukaryota
Descriptioncilium assembly
Cds size168
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406615.0066304-CDS-L-digitata_M_contig101165:476..6441682406615.0066304-CDS-L-digitata_M_contig101165:476..644Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101165 477..644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101165.1.1prot_L-digitata_M_contig101165.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101165 477..644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101165.1.1

>prot_L-digitata_M_contig101165.1.1 ID=prot_L-digitata_M_contig101165.1.1|Name=mRNA_L-digitata_M_contig101165.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=56bp
LEDTRKSSEKLIDTLKAVLEETDIRIADLKKEAYEFKRDIVVGAENMRTG
STMAEK
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mRNA from alignment at L-digitata_M_contig101165:477..644+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101165.1.1 ID=mRNA_L-digitata_M_contig101165.1.1|Name=mRNA_L-digitata_M_contig101165.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=168bp|location=Sequence derived from alignment at L-digitata_M_contig101165:477..644+ (Laminaria digitata LdigPH10_18mv male)
CTGGAGGATACGAGAAAAAGCTCAGAGAAATTGATAGACACGCTCAAGGC
AGTCTTGGAGGAGACAGATATTCGTATTGCCGACCTCAAGAAGGAGGCGT
ATGAGTTCAAAAGGGACATCGTTGTTGGAGCTGAAAACATGAGAACAGGA
AGCACGATGGCGGAAAAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig101165:477..644+

>mRNA_L-digitata_M_contig101165.1.1 ID=mRNA_L-digitata_M_contig101165.1.1|Name=mRNA_L-digitata_M_contig101165.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=168bp|location=Sequence derived from alignment at L-digitata_M_contig101165:477..644+ (Laminaria digitata LdigPH10_18mv male)
CTGGAGGATACGAGAAAAAGCTCAGAGAAATTGATAGACACGCTCAAGGC
AGTCTTGGAGGAGACAGATATTCGTATTGCCGACCTCAAGAAGGAGGCGT
ATGAGTTCAAAAGGGACATCGTTGTTGGAGCTGAAAACATGAGAACAGGA
AGCACGATGGCGGAAAAG
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