mRNA_L-digitata_M_contig101158.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101158.1.1
Unique NamemRNA_L-digitata_M_contig101158.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101158.1.1 vs. uniprot
Match: D8LEY0_ECTSI (Transmembrane 9 superfamily member n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY0_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 6.720e-24
Identity = 47/62 (75.81%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    4 VEWEESDTPFEKRFDFYLEPGFFEHEIHWFSIFNAFMMVIFLCGLVSLILVRTLKNDFAKVS 189
            V W E+D PF+KRFD YL+P FF+H IHWFSI N+FMMVIFLCGLV+LILV+TLKNDFAK S
Sbjct:  204 VAWVETDVPFDKRFDHYLDPKFFKHRIHWFSIINSFMMVIFLCGLVALILVKTLKNDFAKYS 265
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BLAST of mRNA_L-digitata_M_contig101158.1.1 vs. uniprot
Match: A0A6H5KXN7_9PHAE (Transmembrane 9 superfamily member n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXN7_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.180e-23
Identity = 47/61 (77.05%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 KVEWEESDTPFEKRFDFYLEPGFFEHEIHWFSIFNAFMMVIFLCGLVSLILVRTLKNDFAK 183
            +V W ESD PF+KRFD YLEP FF+H IHWFSI N+FMMV+FLCGLV+LILV+TLKNDFAK
Sbjct:  203 EVAWVESDVPFDKRFDSYLEPKFFKHRIHWFSIINSFMMVVFLCGLVALILVKTLKNDFAK 263
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BLAST of mRNA_L-digitata_M_contig101158.1.1 vs. uniprot
Match: A0A8K1FM96_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FM96_PYTOL)

HSP 1 Score: 99.8 bits (247), Expect = 5.650e-23
Identity = 47/61 (77.05%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 KVEWEESDTPFEKRFDFYLEPGFFEHEIHWFSIFNAFMMVIFLCGLVSLILVRTLKNDFAK 183
            +V W  SD PFE+RFD YLE  FFEH+IHWFSIFN+FMMVIFLCGLV+LIL+RTLKND+AK
Sbjct:  204 EVVWSPSDIPFERRFDRYLEDEFFEHQIHWFSIFNSFMMVIFLCGLVALILLRTLKNDYAK 264
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BLAST of mRNA_L-digitata_M_contig101158.1.1 vs. uniprot
Match: A0A662XZR7_9STRA (Transmembrane 9 superfamily member (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZR7_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.800e-22
Identity = 45/61 (73.77%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 KVEWEESDTPFEKRFDFYLEPGFFEHEIHWFSIFNAFMMVIFLCGLVSLILVRTLKNDFAK 183
            +V W E+  PFE RFD YLE  FFEH+IHWFSIFN+FMMVIFLCGLV+LIL+RTLKND+A+
Sbjct:  198 EVAWTETSIPFENRFDRYLEDEFFEHQIHWFSIFNSFMMVIFLCGLVALILLRTLKNDYAR 258
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BLAST of mRNA_L-digitata_M_contig101158.1.1 vs. uniprot
Match: A0A7R9U3Y7_9STRA (Transmembrane 9 superfamily member n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3Y7_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 5.310e-22
Identity = 44/60 (73.33%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    4 VEWEESDTPFEKRFDFYLEPGFFEHEIHWFSIFNAFMMVIFLCGLVSLILVRTLKNDFAK 183
            V W E+D PFE+R+D YL+  FFEH+IHWFSIFN+FMMVIFLCGLV LIL+RT++NDFAK
Sbjct:   68 VNWHETDKPFEQRWDEYLDNAFFEHQIHWFSIFNSFMMVIFLCGLVFLILIRTVRNDFAK 127
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BLAST of mRNA_L-digitata_M_contig101158.1.1 vs. uniprot
Match: UPI00193E6515 (transmembrane 9 superfamily member 3-like n=1 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193E6515)

HSP 1 Score: 90.1 bits (222), Expect = 6.400e-22
Identity = 42/63 (66.67%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    1 KVEWEESDTPFEKRFDFYLEPGFFEHEIHWFSIFNAFMMVIFLCGLVSLILVRTLKNDFAKVS 189
            +V W  S+T FE RFD YL+P FF+H IHWFSIFN+FMMVIFL GLVS+IL+RTL+ D+A+ S
Sbjct:   32 EVNWYRSNTKFEDRFDKYLDPNFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYS 94
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BLAST of mRNA_L-digitata_M_contig101158.1.1 vs. uniprot
Match: A0A662Y5B2_9STRA (Cellulase domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y5B2_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.320e-21
Identity = 45/61 (73.77%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 KVEWEESDTPFEKRFDFYLEPGFFEHEIHWFSIFNAFMMVIFLCGLVSLILVRTLKNDFAK 183
            +V W E+  PFE RFD YLE  FFEH+IHWFSIFN+FMMVIFLCGLV+LIL+RTLKND+A+
Sbjct:  766 EVAWTETAIPFENRFDRYLEDEFFEHQIHWFSIFNSFMMVIFLCGLVALILLRTLKNDYAR 826
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BLAST of mRNA_L-digitata_M_contig101158.1.1 vs. uniprot
Match: A0A2D4CLM2_PYTIN (Transmembrane 9 superfamily member (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CLM2_PYTIN)

HSP 1 Score: 94.4 bits (233), Expect = 1.660e-21
Identity = 44/61 (72.13%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 KVEWEESDTPFEKRFDFYLEPGFFEHEIHWFSIFNAFMMVIFLCGLVSLILVRTLKNDFAK 183
            +V W ++D  FE RFD YLE  FFEH+IHWFSIFN+FMMVIFLCGLV+LIL+RTLKND+A+
Sbjct:  194 EVTWSKTDIAFEDRFDRYLEDEFFEHQIHWFSIFNSFMMVIFLCGLVALILLRTLKNDYAR 254
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BLAST of mRNA_L-digitata_M_contig101158.1.1 vs. uniprot
Match: A0A7S4DBZ3_HETAK (Transmembrane 9 superfamily member n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBZ3_HETAK)

HSP 1 Score: 95.1 bits (235), Expect = 1.700e-21
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    4 VEWEESDTPFEKRFDFYLEPGFFEHEIHWFSIFNAFMMVIFLCGLVSLILVRTLKNDFAK 183
            V W  +D PF  RFD YL+  FFEH+IHWFSIFN+FMMVIFLCGLV LIL+RTLKNDFAK
Sbjct:   44 VHWSPTDQPFHSRFDRYLDNDFFEHQIHWFSIFNSFMMVIFLCGLVFLILMRTLKNDFAK 103
[Close]
BLAST of mRNA_L-digitata_M_contig101158.1.1 vs. uniprot
Match: M4B789_HYAAE (Transmembrane 9 superfamily member n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B789_HYAAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.720e-21
Identity = 44/61 (72.13%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 KVEWEESDTPFEKRFDFYLEPGFFEHEIHWFSIFNAFMMVIFLCGLVSLILVRTLKNDFAK 183
            + EW E+  PF+ RFD YLE  FFEH+IHWFSIFN+FMMVIFLCGLV+LIL+RTLKND+A+
Sbjct:  200 EAEWSETTIPFDGRFDRYLEDEFFEHQIHWFSIFNSFMMVIFLCGLVALILLRTLKNDYAR 260
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101158.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEY0_ECTSI6.720e-2475.81Transmembrane 9 superfamily member n=1 Tax=Ectocar... [more]
A0A6H5KXN7_9PHAE1.180e-2377.05Transmembrane 9 superfamily member n=1 Tax=Ectocar... [more]
A0A8K1FM96_PYTOL5.650e-2377.05Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662XZR7_9STRA2.800e-2273.77Transmembrane 9 superfamily member (Fragment) n=1 ... [more]
A0A7R9U3Y7_9STRA5.310e-2273.33Transmembrane 9 superfamily member n=1 Tax=Pinguio... [more]
UPI00193E65156.400e-2266.67transmembrane 9 superfamily member 3-like n=1 Tax=... [more]
A0A662Y5B2_9STRA1.320e-2173.77Cellulase domain-containing protein (Fragment) n=1... [more]
A0A2D4CLM2_PYTIN1.660e-2172.13Transmembrane 9 superfamily member (Fragment) n=1 ... [more]
A0A7S4DBZ3_HETAK1.700e-2175.00Transmembrane 9 superfamily member n=1 Tax=Heteros... [more]
M4B789_HYAAE1.720e-2172.13Transmembrane 9 superfamily member n=1 Tax=Hyalope... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101158contigL-digitata_M_contig101158:109..297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LEY0
Preferred nameTM9SF3
PFAMsEMP70
Model size189
Max annot lvl2759|Eukaryota
KEGG koko:K02639,ko:K17087
KEGG Pathwayko00195,map00195
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005795,GO:0005797,GO:0005801,GO:0005802,GO:0012505,GO:0016020,GO:0016021,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0097708,GO:0098791
Exons1
Evalue1.1e-24
EggNOG OGsKOG1278@1|root,KOG1277@2759|Eukaryota
Ec32 ortholog descriptionNonaspanin (TM9SF)
Ec32 orthologEc-21_005980.1
Descriptionsecretion of lysosomal enzymes
Cds size189
COG categoryI
BRITEko00000,ko00001,ko00194,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406614.8990643-CDS-L-digitata_M_contig101158:108..2971682406614.8990643-CDS-L-digitata_M_contig101158:108..297Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101158 109..297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101158.1.1prot_L-digitata_M_contig101158.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101158 109..297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101158.1.1

>prot_L-digitata_M_contig101158.1.1 ID=prot_L-digitata_M_contig101158.1.1|Name=mRNA_L-digitata_M_contig101158.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=63bp
KVEWEESDTPFEKRFDFYLEPGFFEHEIHWFSIFNAFMMVIFLCGLVSLI
LVRTLKNDFAKVS
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mRNA from alignment at L-digitata_M_contig101158:109..297-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101158.1.1 ID=mRNA_L-digitata_M_contig101158.1.1|Name=mRNA_L-digitata_M_contig101158.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=189bp|location=Sequence derived from alignment at L-digitata_M_contig101158:109..297- (Laminaria digitata LdigPH10_18mv male)
AAGGTGGAGTGGGAAGAGTCTGATACTCCCTTCGAAAAGCGGTTCGACTT
TTACTTGGAACCCGGGTTCTTTGAGCATGAGATTCACTGGTTTTCTATTT
TCAACGCGTTCATGATGGTGATCTTCTTGTGCGGCCTGGTGTCTCTGATC
CTGGTTCGCACTCTCAAGAATGACTTTGCCAAGGTGAGT
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Coding sequence (CDS) from alignment at L-digitata_M_contig101158:109..297-

>mRNA_L-digitata_M_contig101158.1.1 ID=mRNA_L-digitata_M_contig101158.1.1|Name=mRNA_L-digitata_M_contig101158.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=189bp|location=Sequence derived from alignment at L-digitata_M_contig101158:109..297- (Laminaria digitata LdigPH10_18mv male)
AAGGTGGAGTGGGAAGAGTCTGATACTCCCTTCGAAAAGCGGTTCGACTT
TTACTTGGAACCCGGGTTCTTTGAGCATGAGATTCACTGGTTTTCTATTT
TCAACGCGTTCATGATGGTGATCTTCTTGTGCGGCCTGGTGTCTCTGATC
CTGGTTCGCACTCTCAAGAATGACTTTGCCAAGGTGAGT
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