mRNA_L-digitata_M_contig101144.5.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig101144.5.1 vs. uniprot
Match: A0A3D2BPY3_9PROT (DUF2497 domain-containing protein n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D2BPY3_9PROT) HSP 1 Score: 132 bits (332), Expect = 2.610e-35 Identity = 103/211 (48.82%), Postives = 116/211 (54.98%), Query Frame = 1
Query: 1 MSDQEAQQEPSMEEILASIRRIISEDGDDQTAATGEAAPEAVPEAVEEPEALXXXXXXXXAPDASEAAEEEDVLELTDEVQDDGTVVNLNTGEAVAEEETPEEFVEALELDEEEEVELEMVDAAEEPAEXXXXXXXXXXXXXXXXXXXXXXXPGEVLATEA--ADRLVSENPAMNSVGSLAALAAAVDTHRRAVDPSIGPRTIEDLVKDEM 627
MSD A+QEPSMEEILASIRRIISEDG++ TA PE P A EE VLELTDEVQDDGTVVNL TGE V+EE EEE+V LEM+DA +P P A EA A++LVSE P M SV +L+ LAAAV+ HRRAVDPSIG RTIEDLVK+ M
Sbjct: 1 MSDPNAEQEPSMEEILASIRRIISEDGEEDTAEQPGLKPEPEPP----------------------AGHEEGVLELTDEVQDDGTVVNLKTGEEVSEEPV-----------EEEDVGLEMIDAEGKPE----------------------PEPVIEAAAEAVAAEKLVSEIPGMESVSALSGLAAAVNNHRRAVDPSIGARTIEDLVKEVM 156
BLAST of mRNA_L-digitata_M_contig101144.5.1 vs. uniprot
Match: A0A2D7FM45_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FM45_9PROT) HSP 1 Score: 125 bits (313), Expect = 4.440e-32 Identity = 100/215 (46.51%), Postives = 121/215 (56.28%), Query Frame = 1
Query: 1 MSDQEAQQEPSMEEILASIRRIISEDGDDQTAATGEAAPEAVPEAVEEPEALXXXXXXXXAPDASEAAEEEDVLELTDEVQDDGTVVNLNTGEAVAEEETPEEFVEALELDEEEEVELEMVDAAEEPAEXXXXXXXXXXXXXXXXXXXXXXXPGEVL------ATEAADRLVSENPAMNSVGSLAALAAAVDTHRRAVDPSIGPRTIEDLVKDEM 627
M++Q +QEPSMEEILASIRRIIS DGD++ A E V +P A+ AP E E+ VLELTDE+Q DGTVVNLNTG+ V+ F + EEEVE+++ AEE +E P L E DRL+S + AMNSV SL+ALAAAVDT RRA+DPSIGPR+IEDLVKD M
Sbjct: 1 MTEQNKEQEPSMEEILASIRRIISADGDEKKTAAAERQ-------VIKPLAVA-------APGEPELNEDA-VLELTDEIQADGTVVNLNTGDQVSN------FTIS-----EEEVEIKLGAGAEESSEKESSEPEPSTLAFSQGVTASEPTPKSALEPENVSVEETVDRLISADAAMNSVASLSALAAAVDTRRRALDPSIGPRSIEDLVKDVM 189
BLAST of mRNA_L-digitata_M_contig101144.5.1 vs. uniprot
Match: A0A2D8PUY9_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PUY9_9PROT) HSP 1 Score: 119 bits (297), Expect = 6.290e-30 Identity = 99/209 (47.37%), Postives = 116/209 (55.50%), Query Frame = 1
Query: 1 MSDQEAQQEPSMEEILASIRRIISEDGDDQTAATGEAAPEAVPEAVEEPEALXXXXXXXXAPDASEAAEEEDVLELTDEVQDDGTVVNLNTGEAVAEEETPEEFVEALELDEEEEVELEMVDAAEEPAEXXXXXXXXXXXXXXXXXXXXXXXPGEVLATEAADRLVSENPAMNSVGSLAALAAAVDTHRRAVDPSIGPRTIEDLVKDEM 627
MSDQ +QQEPSMEEILASIRRIISED D++ G AA +AV EP+ A E+ EE+VLELTDEVQDDGTVVNL TGE T +E + E D+ E +VD A A +RLVS+ ++SV SL+ALAAAVD HRRA DPSIGPRTIEDLVK+ M
Sbjct: 1 MSDQNSQQEPSMEEILASIRRIISEDVDEE----GSAAEKAVEAFEAEPKIGDETIADDLV--AEESEYEEEVLELTDEVQDDGTVVNLKTGE------TLDEDTQQTEEDDPHR-ETGLVDEITTSAS----------------------------AAVIDERLVSQTAGIDSVSSLSALAAAVDDHRRASDPSIGPRTIEDLVKEVM 168
BLAST of mRNA_L-digitata_M_contig101144.5.1 vs. uniprot
Match: A0A2S6QBL8_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6QBL8_9PROT) HSP 1 Score: 69.7 bits (169), Expect = 3.450e-11 Identity = 49/98 (50.00%), Postives = 57/98 (58.16%), Query Frame = 1
Query: 1 MSDQEAQQEPSMEEILASIRRIISEDGDDQTAATGEAAPEAVPEAVEEPEALXXXXXXXXAPDASEAAEEE-----DVLELTDEVQDDGTVVNLNTGE 279
MSDQ A++EPSMEEILASIR+IISEDG A P P++ +A E+E DVLELTDEV+DDGTVVNL TGE
Sbjct: 1 MSDQRAEKEPSMEEILASIRQIISEDGQKVVA----------------PPTDNMNLMAGSKPNSLDALEQETRVFEDVLELTDEVKDDGTVVNLKTGE 82
BLAST of mRNA_L-digitata_M_contig101144.5.1 vs. uniprot
Match: UPI001A9775D2 (DUF2497 domain-containing protein n=1 Tax=Azospirillum sp. SYSU D00513 TaxID=2812561 RepID=UPI001A9775D2) HSP 1 Score: 59.3 bits (142), Expect = 3.270e-7 Identity = 54/90 (60.00%), Postives = 60/90 (66.67%), Query Frame = 1
Query: 1 MSDQEAQQEPSMEEILASIRRIISEDGDDQTAATGEAAPEAVPEAVEEPEALXXXXXXXXAPDASEAAEEEDVLELTDEVQDDGTVVNLN 270
MSD+ QQEPSMEEILASIRRIISEDGD AATG EPE XXXXXXXX E+DVLELT V+DDG+VV++N
Sbjct: 1 MSDK-GQQEPSMEEILASIRRIISEDGD---AATGG-----------EPETXXXXXXXXXXXXXXXXXVEDDVLELTQMVRDDGSVVDVN 75
BLAST of mRNA_L-digitata_M_contig101144.5.1 vs. uniprot
Match: A0A2S6RAY4_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium MarineAlpha10_Bin1 TaxID=2013103 RepID=A0A2S6RAY4_9PROT) HSP 1 Score: 57.4 bits (137), Expect = 1.000e-6 Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = 1
Query: 1 MSDQEAQQEPSMEEILASIRRIISEDGDDQTAATGEAAPEAVPEAVEEPEALXXXXXXXXAPDASEAAEEEDVLELTDEVQDDGTVVNLNTGEAVAEEETP 303
M D+ +Q+EPSMEEILASIRRIISEDG+++ A EA EA A E+ XXXXXXX A ++VLELT+EV G VV+ E A E P
Sbjct: 1 MVDETSQEEPSMEEILASIRRIISEDGEEEGAPAAEAGAEA---ATEDAAGANXXXXXXXXXXPMADAAGDEVLELTEEVDAQGNVVSDEIAETPAPEPEP 98
BLAST of mRNA_L-digitata_M_contig101144.5.1 vs. uniprot
Match: A0A0Q7SIH8_9CAUL (Uncharacterized protein n=1 Tax=Brevundimonas sp. Root1423 TaxID=1736462 RepID=A0A0Q7SIH8_9CAUL) HSP 1 Score: 55.5 bits (132), Expect = 6.310e-6 Identity = 41/79 (51.90%), Postives = 46/79 (58.23%), Query Frame = 1
Query: 1 MSDQEAQQEPSMEEILASIRRIISEDGDDQTAATGEAAPEAVPEAVEEPEALXXXXXXXXAPDASEA-AEEEDVLELTD 234
M+DQ A QEP+MEEILASIRRIISED AT AAP A E + E P EA + EEDVLELT+
Sbjct: 1 MTDQTAAQEPTMEEILASIRRIISEDDAPAETATAAAAPGAEVEPAADAEPESSPALMDETPSRQEADSPEEDVLELTE 79
BLAST of mRNA_L-digitata_M_contig101144.5.1 vs. uniprot
Match: A0A2E8XMY7_9PROT (Pole-organizing protein PopZ n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XMY7_9PROT) HSP 1 Score: 54.3 bits (129), Expect = 1.010e-5 Identity = 46/93 (49.46%), Postives = 54/93 (58.06%), Query Frame = 1
Query: 1 MSDQEAQQEPSMEEILASIRRIISEDGDDQTAATGEAAPEAVPEAVE-----EPEALXXXXXXXXAPDASEAAE-----EEDVLELTDEVQDD 249
MSD QQEPSMEEILASIRRIISEDG+++ G A EA E VE EPE + DA AE +ED+LELTD + D+
Sbjct: 1 MSDTPDQQEPSMEEILASIRRIISEDGEEEV---GGEALEADAEEVETLTETEPETV----------DAEPVAEPGGDLDEDILELTDVIDDE 80
BLAST of mRNA_L-digitata_M_contig101144.5.1 vs. uniprot
Match: A0A1B0Z2B2_9PROT (Uncharacterized protein n=1 Tax=uncultured Alphaproteobacteria bacterium TaxID=91750 RepID=A0A1B0Z2B2_9PROT) HSP 1 Score: 54.7 bits (130), Expect = 1.160e-5 Identity = 43/90 (47.78%), Postives = 56/90 (62.22%), Query Frame = 1
Query: 1 MSDQEAQQEPSMEEILASIRRIISEDGDDQTAATGEAAPEAVPEAVEEPEALXXXXXXXXAP--DASE-AAEEEDVLELTDEVQDDGTVV 261
M+D+ +Q EPSMEEILASIRRIISE G++ E P+A ++E+ AL A DA+E A ++VLELTDEV + G VV
Sbjct: 1 MADETSQAEPSMEEILASIRRIISEGGEE------EEKPDAARPSIEKYSALGAGRISAEAQLADAAELTAAGDEVLELTDEVDEHGNVV 84
BLAST of mRNA_L-digitata_M_contig101144.5.1 vs. uniprot
Match: A0A519HJD5_9CAUL (DUF2497 domain-containing protein n=2 Tax=unclassified Brevundimonas TaxID=2622653 RepID=A0A519HJD5_9CAUL) HSP 1 Score: 54.3 bits (129), Expect = 1.470e-5 Identity = 44/79 (55.70%), Postives = 48/79 (60.76%), Query Frame = 1
Query: 1 MSDQEAQQEPSMEEILASIRRIISEDGDDQTAATGEAAPEAVPEAVEEPE-ALXXXXXXXXAPDASEAAEEEDVLELTD 234
M+D A QEP+MEEILASIRRIISED AT AAP A PEA P AL P+ASE EDVLELT+
Sbjct: 1 MTDTTAAQEPTMEEILASIRRIISEDDAPAETATA-AAPTAEPEAEAAPSPALMDETPSMQEPEASE----EDVLELTE 74 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101144.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig101144.5.1 >prot_L-digitata_M_contig101144.5.1 ID=prot_L-digitata_M_contig101144.5.1|Name=mRNA_L-digitata_M_contig101144.5.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=209bp MSDQEAQQEPSMEEILASIRRIISEDGDDQTAATGEAAPEAVPEAVEEPEback to top mRNA from alignment at L-digitata_M_contig101144:305..931+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig101144.5.1 ID=mRNA_L-digitata_M_contig101144.5.1|Name=mRNA_L-digitata_M_contig101144.5.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=627bp|location=Sequence derived from alignment at L-digitata_M_contig101144:305..931+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig101144:305..931+ >mRNA_L-digitata_M_contig101144.5.1 ID=mRNA_L-digitata_M_contig101144.5.1|Name=mRNA_L-digitata_M_contig101144.5.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=627bp|location=Sequence derived from alignment at L-digitata_M_contig101144:305..931+ (Laminaria digitata LdigPH10_18mv male)back to top |