mRNA_L-digitata_M_contig101144.5.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101144.5.1
Unique NamemRNA_L-digitata_M_contig101144.5.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101144.5.1 vs. uniprot
Match: A0A3D2BPY3_9PROT (DUF2497 domain-containing protein n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D2BPY3_9PROT)

HSP 1 Score: 132 bits (332), Expect = 2.610e-35
Identity = 103/211 (48.82%), Postives = 116/211 (54.98%), Query Frame = 1
Query:    1 MSDQEAQQEPSMEEILASIRRIISEDGDDQTAATGEAAPEAVPEAVEEPEALXXXXXXXXAPDASEAAEEEDVLELTDEVQDDGTVVNLNTGEAVAEEETPEEFVEALELDEEEEVELEMVDAAEEPAEXXXXXXXXXXXXXXXXXXXXXXXPGEVLATEA--ADRLVSENPAMNSVGSLAALAAAVDTHRRAVDPSIGPRTIEDLVKDEM 627
            MSD  A+QEPSMEEILASIRRIISEDG++ TA      PE  P                       A  EE VLELTDEVQDDGTVVNL TGE V+EE             EEE+V LEM+DA  +P                         P    A EA  A++LVSE P M SV +L+ LAAAV+ HRRAVDPSIG RTIEDLVK+ M
Sbjct:    1 MSDPNAEQEPSMEEILASIRRIISEDGEEDTAEQPGLKPEPEPP----------------------AGHEEGVLELTDEVQDDGTVVNLKTGEEVSEEPV-----------EEEDVGLEMIDAEGKPE----------------------PEPVIEAAAEAVAAEKLVSEIPGMESVSALSGLAAAVNNHRRAVDPSIGARTIEDLVKEVM 156          
BLAST of mRNA_L-digitata_M_contig101144.5.1 vs. uniprot
Match: A0A2D7FM45_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FM45_9PROT)

HSP 1 Score: 125 bits (313), Expect = 4.440e-32
Identity = 100/215 (46.51%), Postives = 121/215 (56.28%), Query Frame = 1
Query:    1 MSDQEAQQEPSMEEILASIRRIISEDGDDQTAATGEAAPEAVPEAVEEPEALXXXXXXXXAPDASEAAEEEDVLELTDEVQDDGTVVNLNTGEAVAEEETPEEFVEALELDEEEEVELEMVDAAEEPAEXXXXXXXXXXXXXXXXXXXXXXXPGEVL------ATEAADRLVSENPAMNSVGSLAALAAAVDTHRRAVDPSIGPRTIEDLVKDEM 627
            M++Q  +QEPSMEEILASIRRIIS DGD++  A  E         V +P A+        AP   E  E+  VLELTDE+Q DGTVVNLNTG+ V+       F  +     EEEVE+++   AEE +E                       P   L        E  DRL+S + AMNSV SL+ALAAAVDT RRA+DPSIGPR+IEDLVKD M
Sbjct:    1 MTEQNKEQEPSMEEILASIRRIISADGDEKKTAAAERQ-------VIKPLAVA-------APGEPELNEDA-VLELTDEIQADGTVVNLNTGDQVSN------FTIS-----EEEVEIKLGAGAEESSEKESSEPEPSTLAFSQGVTASEPTPKSALEPENVSVEETVDRLISADAAMNSVASLSALAAAVDTRRRALDPSIGPRSIEDLVKDVM 189          
BLAST of mRNA_L-digitata_M_contig101144.5.1 vs. uniprot
Match: A0A2D8PUY9_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PUY9_9PROT)

HSP 1 Score: 119 bits (297), Expect = 6.290e-30
Identity = 99/209 (47.37%), Postives = 116/209 (55.50%), Query Frame = 1
Query:    1 MSDQEAQQEPSMEEILASIRRIISEDGDDQTAATGEAAPEAVPEAVEEPEALXXXXXXXXAPDASEAAEEEDVLELTDEVQDDGTVVNLNTGEAVAEEETPEEFVEALELDEEEEVELEMVDAAEEPAEXXXXXXXXXXXXXXXXXXXXXXXPGEVLATEAADRLVSENPAMNSVGSLAALAAAVDTHRRAVDPSIGPRTIEDLVKDEM 627
            MSDQ +QQEPSMEEILASIRRIISED D++    G AA +AV     EP+             A E+  EE+VLELTDEVQDDGTVVNL TGE      T +E  +  E D+    E  +VD     A                             A    +RLVS+   ++SV SL+ALAAAVD HRRA DPSIGPRTIEDLVK+ M
Sbjct:    1 MSDQNSQQEPSMEEILASIRRIISEDVDEE----GSAAEKAVEAFEAEPKIGDETIADDLV--AEESEYEEEVLELTDEVQDDGTVVNLKTGE------TLDEDTQQTEEDDPHR-ETGLVDEITTSAS----------------------------AAVIDERLVSQTAGIDSVSSLSALAAAVDDHRRASDPSIGPRTIEDLVKEVM 168          
BLAST of mRNA_L-digitata_M_contig101144.5.1 vs. uniprot
Match: A0A2S6QBL8_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6QBL8_9PROT)

HSP 1 Score: 69.7 bits (169), Expect = 3.450e-11
Identity = 49/98 (50.00%), Postives = 57/98 (58.16%), Query Frame = 1
Query:    1 MSDQEAQQEPSMEEILASIRRIISEDGDDQTAATGEAAPEAVPEAVEEPEALXXXXXXXXAPDASEAAEEE-----DVLELTDEVQDDGTVVNLNTGE 279
            MSDQ A++EPSMEEILASIR+IISEDG    A                P            P++ +A E+E     DVLELTDEV+DDGTVVNL TGE
Sbjct:    1 MSDQRAEKEPSMEEILASIRQIISEDGQKVVA----------------PPTDNMNLMAGSKPNSLDALEQETRVFEDVLELTDEVKDDGTVVNLKTGE 82          
BLAST of mRNA_L-digitata_M_contig101144.5.1 vs. uniprot
Match: UPI001A9775D2 (DUF2497 domain-containing protein n=1 Tax=Azospirillum sp. SYSU D00513 TaxID=2812561 RepID=UPI001A9775D2)

HSP 1 Score: 59.3 bits (142), Expect = 3.270e-7
Identity = 54/90 (60.00%), Postives = 60/90 (66.67%), Query Frame = 1
Query:    1 MSDQEAQQEPSMEEILASIRRIISEDGDDQTAATGEAAPEAVPEAVEEPEALXXXXXXXXAPDASEAAEEEDVLELTDEVQDDGTVVNLN 270
            MSD+  QQEPSMEEILASIRRIISEDGD   AATG            EPE  XXXXXXXX         E+DVLELT  V+DDG+VV++N
Sbjct:    1 MSDK-GQQEPSMEEILASIRRIISEDGD---AATGG-----------EPETXXXXXXXXXXXXXXXXXVEDDVLELTQMVRDDGSVVDVN 75          
BLAST of mRNA_L-digitata_M_contig101144.5.1 vs. uniprot
Match: A0A2S6RAY4_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium MarineAlpha10_Bin1 TaxID=2013103 RepID=A0A2S6RAY4_9PROT)

HSP 1 Score: 57.4 bits (137), Expect = 1.000e-6
Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 MSDQEAQQEPSMEEILASIRRIISEDGDDQTAATGEAAPEAVPEAVEEPEALXXXXXXXXAPDASEAAEEEDVLELTDEVQDDGTVVNLNTGEAVAEEETP 303
            M D+ +Q+EPSMEEILASIRRIISEDG+++ A   EA  EA   A E+     XXXXXXX       A  ++VLELT+EV   G VV+    E  A E  P
Sbjct:    1 MVDETSQEEPSMEEILASIRRIISEDGEEEGAPAAEAGAEA---ATEDAAGANXXXXXXXXXXPMADAAGDEVLELTEEVDAQGNVVSDEIAETPAPEPEP 98          
BLAST of mRNA_L-digitata_M_contig101144.5.1 vs. uniprot
Match: A0A0Q7SIH8_9CAUL (Uncharacterized protein n=1 Tax=Brevundimonas sp. Root1423 TaxID=1736462 RepID=A0A0Q7SIH8_9CAUL)

HSP 1 Score: 55.5 bits (132), Expect = 6.310e-6
Identity = 41/79 (51.90%), Postives = 46/79 (58.23%), Query Frame = 1
Query:    1 MSDQEAQQEPSMEEILASIRRIISEDGDDQTAATGEAAPEAVPEAVEEPEALXXXXXXXXAPDASEA-AEEEDVLELTD 234
            M+DQ A QEP+MEEILASIRRIISED      AT  AAP A  E   + E           P   EA + EEDVLELT+
Sbjct:    1 MTDQTAAQEPTMEEILASIRRIISEDDAPAETATAAAAPGAEVEPAADAEPESSPALMDETPSRQEADSPEEDVLELTE 79          
BLAST of mRNA_L-digitata_M_contig101144.5.1 vs. uniprot
Match: A0A2E8XMY7_9PROT (Pole-organizing protein PopZ n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XMY7_9PROT)

HSP 1 Score: 54.3 bits (129), Expect = 1.010e-5
Identity = 46/93 (49.46%), Postives = 54/93 (58.06%), Query Frame = 1
Query:    1 MSDQEAQQEPSMEEILASIRRIISEDGDDQTAATGEAAPEAVPEAVE-----EPEALXXXXXXXXAPDASEAAE-----EEDVLELTDEVQDD 249
            MSD   QQEPSMEEILASIRRIISEDG+++    G  A EA  E VE     EPE +          DA   AE     +ED+LELTD + D+
Sbjct:    1 MSDTPDQQEPSMEEILASIRRIISEDGEEEV---GGEALEADAEEVETLTETEPETV----------DAEPVAEPGGDLDEDILELTDVIDDE 80          
BLAST of mRNA_L-digitata_M_contig101144.5.1 vs. uniprot
Match: A0A1B0Z2B2_9PROT (Uncharacterized protein n=1 Tax=uncultured Alphaproteobacteria bacterium TaxID=91750 RepID=A0A1B0Z2B2_9PROT)

HSP 1 Score: 54.7 bits (130), Expect = 1.160e-5
Identity = 43/90 (47.78%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    1 MSDQEAQQEPSMEEILASIRRIISEDGDDQTAATGEAAPEAVPEAVEEPEALXXXXXXXXAP--DASE-AAEEEDVLELTDEVQDDGTVV 261
            M+D+ +Q EPSMEEILASIRRIISE G++      E  P+A   ++E+  AL        A   DA+E  A  ++VLELTDEV + G VV
Sbjct:    1 MADETSQAEPSMEEILASIRRIISEGGEE------EEKPDAARPSIEKYSALGAGRISAEAQLADAAELTAAGDEVLELTDEVDEHGNVV 84          
BLAST of mRNA_L-digitata_M_contig101144.5.1 vs. uniprot
Match: A0A519HJD5_9CAUL (DUF2497 domain-containing protein n=2 Tax=unclassified Brevundimonas TaxID=2622653 RepID=A0A519HJD5_9CAUL)

HSP 1 Score: 54.3 bits (129), Expect = 1.470e-5
Identity = 44/79 (55.70%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    1 MSDQEAQQEPSMEEILASIRRIISEDGDDQTAATGEAAPEAVPEAVEEPE-ALXXXXXXXXAPDASEAAEEEDVLELTD 234
            M+D  A QEP+MEEILASIRRIISED      AT  AAP A PEA   P  AL         P+ASE    EDVLELT+
Sbjct:    1 MTDTTAAQEPTMEEILASIRRIISEDDAPAETATA-AAPTAEPEAEAAPSPALMDETPSMQEPEASE----EDVLELTE 74          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101144.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A3D2BPY3_9PROT2.610e-3548.82DUF2497 domain-containing protein n=2 Tax=Rhodospi... [more]
A0A2D7FM45_9PROT4.440e-3246.51Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A2D8PUY9_9PROT6.290e-3047.37Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A2S6QBL8_9PROT3.450e-1150.00Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
UPI001A9775D23.270e-760.00DUF2497 domain-containing protein n=1 Tax=Azospiri... [more]
A0A2S6RAY4_9PROT1.000e-650.50Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
A0A0Q7SIH8_9CAUL6.310e-651.90Uncharacterized protein n=1 Tax=Brevundimonas sp. ... [more]
A0A2E8XMY7_9PROT1.010e-549.46Pole-organizing protein PopZ n=1 Tax=Alphaproteoba... [more]
A0A1B0Z2B2_9PROT1.160e-547.78Uncharacterized protein n=1 Tax=uncultured Alphapr... [more]
A0A519HJD5_9CAUL1.470e-555.70DUF2497 domain-containing protein n=2 Tax=unclassi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101144contigL-digitata_M_contig101144:305..931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog570952.ATVH01000011_gene249
PFAMsDUF2497
Model size627
Max annot lvl204441|Rhodospirillales
KEGG koko:K09991
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.01e-05
EggNOG OGsCOG3827@1|root,COG3827@2|Bacteria,1MX61@1224|Proteobacteria,2TSG8@28211|Alphaproteobacteria,2JT2F@204441|Rhodospirillales
DescriptionProtein conserved in bacteria
Cds size627
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406614.7363446-CDS-L-digitata_M_contig101144:304..9311682406614.7363446-CDS-L-digitata_M_contig101144:304..931Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101144 305..931 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101144.5.1prot_L-digitata_M_contig101144.5.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101144 305..931 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101144.5.1

>prot_L-digitata_M_contig101144.5.1 ID=prot_L-digitata_M_contig101144.5.1|Name=mRNA_L-digitata_M_contig101144.5.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=209bp
MSDQEAQQEPSMEEILASIRRIISEDGDDQTAATGEAAPEAVPEAVEEPE
ALAEPEPEPEAPDASEAAEEEDVLELTDEVQDDGTVVNLNTGEAVAEEET
PEEFVEALELDEEEEVELEMVDAAEEPAEEAVAEPAAEPEPAPVVQEEPQ
PEPGEVLATEAADRLVSENPAMNSVGSLAALAAAVDTHRRAVDPSIGPRT
IEDLVKDEM
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mRNA from alignment at L-digitata_M_contig101144:305..931+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101144.5.1 ID=mRNA_L-digitata_M_contig101144.5.1|Name=mRNA_L-digitata_M_contig101144.5.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=627bp|location=Sequence derived from alignment at L-digitata_M_contig101144:305..931+ (Laminaria digitata LdigPH10_18mv male)
ATGAGCGACCAGGAAGCACAACAAGAACCATCGATGGAGGAGATTCTCGC CTCTATCAGGCGGATCATATCCGAAGATGGCGATGACCAGACCGCTGCTA CTGGCGAAGCGGCGCCTGAGGCTGTGCCCGAGGCAGTCGAAGAACCGGAA GCATTGGCTGAACCCGAACCCGAACCGGAGGCGCCGGACGCATCGGAGGC AGCCGAAGAGGAGGATGTCCTCGAGCTTACCGATGAAGTCCAGGACGACG GTACGGTCGTAAATCTCAATACGGGCGAAGCTGTCGCGGAAGAAGAAACA CCTGAAGAATTCGTCGAGGCTCTTGAGTTGGACGAAGAGGAAGAGGTTGA ACTCGAGATGGTTGACGCTGCGGAAGAGCCCGCAGAAGAGGCGGTCGCCG AACCGGCAGCCGAACCGGAACCTGCACCCGTGGTGCAGGAAGAACCGCAG CCGGAGCCCGGAGAGGTGCTTGCGACCGAGGCCGCAGACCGTCTCGTATC GGAAAACCCGGCAATGAATTCCGTTGGATCCCTTGCAGCGCTTGCGGCTG CCGTAGATACGCATCGTCGCGCTGTCGATCCCAGCATCGGTCCGCGCACC ATCGAAGATCTGGTTAAGGACGAGATG
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Coding sequence (CDS) from alignment at L-digitata_M_contig101144:305..931+

>mRNA_L-digitata_M_contig101144.5.1 ID=mRNA_L-digitata_M_contig101144.5.1|Name=mRNA_L-digitata_M_contig101144.5.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=627bp|location=Sequence derived from alignment at L-digitata_M_contig101144:305..931+ (Laminaria digitata LdigPH10_18mv male)
ATGAGCGACCAGGAAGCACAACAAGAACCATCGATGGAGGAGATTCTCGC
CTCTATCAGGCGGATCATATCCGAAGATGGCGATGACCAGACCGCTGCTA
CTGGCGAAGCGGCGCCTGAGGCTGTGCCCGAGGCAGTCGAAGAACCGGAA
GCATTGGCTGAACCCGAACCCGAACCGGAGGCGCCGGACGCATCGGAGGC
AGCCGAAGAGGAGGATGTCCTCGAGCTTACCGATGAAGTCCAGGACGACG
GTACGGTCGTAAATCTCAATACGGGCGAAGCTGTCGCGGAAGAAGAAACA
CCTGAAGAATTCGTCGAGGCTCTTGAGTTGGACGAAGAGGAAGAGGTTGA
ACTCGAGATGGTTGACGCTGCGGAAGAGCCCGCAGAAGAGGCGGTCGCCG
AACCGGCAGCCGAACCGGAACCTGCACCCGTGGTGCAGGAAGAACCGCAG
CCGGAGCCCGGAGAGGTGCTTGCGACCGAGGCCGCAGACCGTCTCGTATC
GGAAAACCCGGCAATGAATTCCGTTGGATCCCTTGCAGCGCTTGCGGCTG
CCGTAGATACGCATCGTCGCGCTGTCGATCCCAGCATCGGTCCGCGCACC
ATCGAAGATCTGGTTAAGGACGAGATG
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