mRNA_L-digitata_M_contig101144.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101144.1.1
Unique NamemRNA_L-digitata_M_contig101144.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101144.1.1 vs. uniprot
Match: A0A2D7FM51_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FM51_9PROT)

HSP 1 Score: 108 bits (271), Expect = 1.420e-26
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 ARVGLVRAMRDELVATYQLRQAIGEATAEKLGLPVELYNVEKHYREVRGKWWGLGASDGK 180
            ARVG VRAMRDELVATYQLRQA+G ATAE+L LPV LYNV+ HYREVRGKWWGLGA+DGK
Sbjct:  398 ARVGRVRAMRDELVATYQLRQAVGAATAERLELPVTLYNVDDHYREVRGKWWGLGANDGK 457
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BLAST of mRNA_L-digitata_M_contig101144.1.1 vs. uniprot
Match: A0A3D2BQD6_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D2BQD6_9PROT)

HSP 1 Score: 101 bits (252), Expect = 7.810e-26
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 ARVGLVRAMRDELVATYQLRQAIGEATAEKLGLPVELYNVEKHYREVRGKWWGLGASDGK 180
            ARVGL R+MRDELVATYQLR+A+GE TA KL LPV+LYN E HYR VRGKWWGL A DGK
Sbjct:  115 ARVGLARSMRDELVATYQLRRAVGELTAAKLSLPVDLYNPETHYRRVRGKWWGLTADDGK 174
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BLAST of mRNA_L-digitata_M_contig101144.1.1 vs. uniprot
Match: A0A520NN88_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NN88_9PROT)

HSP 1 Score: 100 bits (249), Expect = 1.810e-23
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 ARVGLVRAMRDELVATYQLRQAIGEATAEKLGLPVELYNVEKHYREVRGKWWGLGASDGK 180
            ARVGLVR+MRDELVATYQLR+A+G+ TA KL LPV LYN E HYR  RGKWWGL A DGK
Sbjct:  399 ARVGLVRSMRDELVATYQLRRAVGDLTAAKLSLPVNLYNPETHYRRARGKWWGLAADDGK 458
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BLAST of mRNA_L-digitata_M_contig101144.1.1 vs. uniprot
Match: A0A2D8PV20_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PV20_9PROT)

HSP 1 Score: 96.7 bits (239), Expect = 4.440e-22
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    1 ARVGLVRAMRDELVATYQLRQAIGEATAEKLGLPVELYNVEKHYREVRGKWWGLGAS 171
            ARVGLVRA+RDELVATY+LRQA+GE TA+KLGLPV +YNVE +YR VR KWWGLG  
Sbjct:  396 ARVGLVRALRDELVATYRLRQAVGELTAQKLGLPVVIYNVETNYRRVRNKWWGLGID 452
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BLAST of mRNA_L-digitata_M_contig101144.1.1 vs. uniprot
Match: A0A2S6QBP4_9PROT (Outer membrane efflux protein BepC n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6QBP4_9PROT)

HSP 1 Score: 90.5 bits (223), Expect = 7.600e-20
Identity = 40/60 (66.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 ARVGLVRAMRDELVATYQLRQAIGEATAEKLGLPVELYNVEKHYREVRGKWWGLGASDGK 180
            ARVG+ R MRDELVATY+LR A+GE TA KLGLPV+ Y+  KH++  RGKWWGL A DG+
Sbjct:  399 ARVGVARTMRDELVATYRLRSAVGELTAVKLGLPVKFYDPGKHHQRARGKWWGLSADDGR 458
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BLAST of mRNA_L-digitata_M_contig101144.1.1 vs. uniprot
Match: A0A2D8G7L3_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G7L3_9PROT)

HSP 1 Score: 84.3 bits (207), Expect = 1.420e-18
Identity = 40/60 (66.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 ARVGLVRAMRDELVATYQLRQAIGEATAEKLGLPVELYNVEKHYREVRGKWWGLGASDGK 180
            ARVGLV A RDELVATY L +A+GE TAE+L L V+LYN + HY++VRGKWWGL A + K
Sbjct:  168 ARVGLVLARRDELVATYXLSEAMGELTAEELKLSVQLYNPDTHYKKVRGKWWGLTAGEVK 227
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BLAST of mRNA_L-digitata_M_contig101144.1.1 vs. uniprot
Match: UPI000402D06A (TolC family outer membrane protein n=1 Tax=Azospirillum halopraeferens TaxID=34010 RepID=UPI000402D06A)

HSP 1 Score: 77.4 bits (189), Expect = 3.610e-15
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 ARVGLVRAMRDELVATYQLRQAIGEATAEKLGLPVELYNVEKHYREVRGKWWGLGASD 174
            ARV LVRA R E+VA +QL  AIG  TA++L LPV+ YN++ HY++VRGKWWG   ++
Sbjct:  407 ARVNLVRAQRQEMVAAFQLLSAIGSLTAQQLNLPVDQYNMDDHYQQVRGKWWGTDVTE 464
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BLAST of mRNA_L-digitata_M_contig101144.1.1 vs. uniprot
Match: UPI0019CDBDC9 (TolC family protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=UPI0019CDBDC9)

HSP 1 Score: 67.8 bits (164), Expect = 2.250e-13
Identity = 35/60 (58.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 ARVGLVRAMRDELVATYQLRQAIGEATAEKLGLPVELYNVEKHYREVRGKWWGLGASDGK 180
            A+V L  A  D  VAT Q+R AIGE TAE LGLPVELY+   HY EVRGK +G G   G+
Sbjct:   37 AQVNLTNAHHDFQVATLQVRAAIGEMTAESLGLPVELYDPSLHYNEVRGKLFGTGTVPGE 96
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BLAST of mRNA_L-digitata_M_contig101144.1.1 vs. uniprot
Match: A0A6N7FFU1_9PROT (TolC family outer membrane protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7FFU1_9PROT)

HSP 1 Score: 72.0 bits (175), Expect = 2.910e-13
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 ARVGLVRAMRDELVATYQLRQAIGEATAEKLGLPVELYNVEKHYREVRGKWWGLGAS 171
            ARV LV+A RDE+VA++ LR A+GE TA  L LPVE Y+ E HY+ VRGK+WG    
Sbjct:  400 ARVSLVQAQRDEVVASFSLRAAVGELTARNLNLPVEGYDYEAHYKAVRGKFWGTSID 456
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BLAST of mRNA_L-digitata_M_contig101144.1.1 vs. uniprot
Match: A0A3N5NVM4_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3N5NVM4_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 3.970e-13
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 ARVGLVRAMRDELVATYQLRQAIGEATAEKLGLPVELYNVEKHYREVRGKWWGLGAS 171
            ARV LVRA  DE+VAT+ LR A+G  TA++L L V+ Y+V+ HYR VRGKW G G  
Sbjct:  396 ARVNLVRAQHDEVVATFSLRSAVGTLTADRLALNVDRYDVDGHYRAVRGKWIGTGVD 452
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101144.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7FM51_9PROT1.420e-2685.00Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A3D2BQD6_9PROT7.810e-2678.33Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A520NN88_9PROT1.810e-2376.67Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A2D8PV20_9PROT4.440e-2277.19Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A2S6QBP4_9PROT7.600e-2066.67Outer membrane efflux protein BepC n=1 Tax=Alphapr... [more]
A0A2D8G7L3_9PROT1.420e-1866.67Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
UPI000402D06A3.610e-1556.90TolC family outer membrane protein n=1 Tax=Azospir... [more]
UPI0019CDBDC92.250e-1358.33TolC family protein n=1 Tax=Rhodospirillaceae bact... [more]
A0A6N7FFU1_9PROT2.910e-1357.89TolC family outer membrane protein n=1 Tax=Alphapr... [more]
A0A3N5NVM4_9BACT3.970e-1357.89Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101144contigL-digitata_M_contig101144:2..184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1121033.AUCF01000001_gene2232
Preferred nametolC
PFAMsOEP
Model size183
Max annot lvl204441|Rhodospirillales
KEGG koko:K12340
KEGG TC1.B.17,2.A.6.2
KEGG Pathwayko01501,ko01503,ko02020,ko03070,ko04626,ko05133,map01501,map01503,map02020,map03070,map04626,map05133
KEGG ModuleM00325,M00326,M00339,M00571,M00575,M00646,M00647,M00696,M00697,M00709,M00720,M00821
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.99e-12
EggNOG OGsCOG1538@1|root,COG1538@2|Bacteria,1MWCJ@1224|Proteobacteria,2TR3S@28211|Alphaproteobacteria,2JP85@204441|Rhodospirillales
DescriptionCyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin)
Cds size159
COG categoryMU
BRITEko00000,ko00001,ko00002,ko01504,ko02000,ko02044
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406614.6890836-UTR-L-digitata_M_contig101144:1..251682406614.6890836-UTR-L-digitata_M_contig101144:1..25Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig101144 2..25 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406614.7102358-CDS-L-digitata_M_contig101144:25..1841682406614.7102358-CDS-L-digitata_M_contig101144:25..184Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101144 26..184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101144.1.1prot_L-digitata_M_contig101144.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101144 26..184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101144.1.1

>prot_L-digitata_M_contig101144.1.1 ID=prot_L-digitata_M_contig101144.1.1|Name=mRNA_L-digitata_M_contig101144.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=53bp
MRDELVATYQLRQAIGEATAEKLGLPVELYNVEKHYREVRGKWWGLGASD
GK*
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mRNA from alignment at L-digitata_M_contig101144:2..184+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101144.1.1 ID=mRNA_L-digitata_M_contig101144.1.1|Name=mRNA_L-digitata_M_contig101144.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=183bp|location=Sequence derived from alignment at L-digitata_M_contig101144:2..184+ (Laminaria digitata LdigPH10_18mv male)
GCCCGGGTTGGGCTGGTGCGGGCCATGCGCGACGAACTTGTCGCGACCTA
TCAGCTTCGCCAGGCAATCGGCGAAGCGACAGCCGAAAAACTGGGGCTTC
CAGTGGAACTCTACAATGTCGAAAAGCACTACCGTGAAGTGCGCGGAAAG
TGGTGGGGGCTTGGCGCCAGTGACGGCAAGTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig101144:2..184+

>mRNA_L-digitata_M_contig101144.1.1 ID=mRNA_L-digitata_M_contig101144.1.1|Name=mRNA_L-digitata_M_contig101144.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=159bp|location=Sequence derived from alignment at L-digitata_M_contig101144:2..184+ (Laminaria digitata LdigPH10_18mv male)
ATGCGCGACGAACTTGTCGCGACCTATCAGCTTCGCCAGGCAATCGGCGA
AGCGACAGCCGAAAAACTGGGGCTTCCAGTGGAACTCTACAATGTCGAAA
AGCACTACCGTGAAGTGCGCGGAAAGTGGTGGGGGCTTGGCGCCAGTGAC
GGCAAGTGA
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