mRNA_L-digitata_M_contig101140.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101140.2.1
Unique NamemRNA_L-digitata_M_contig101140.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101140.2.1 vs. uniprot
Match: A0A3A4JJH7_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A3A4JJH7_9DELT)

HSP 1 Score: 74.7 bits (182), Expect = 4.280e-12
Identity = 66/229 (28.82%), Postives = 104/229 (45.41%), Query Frame = 1
Query:   37 SPQRGVALIMVMVITTLLAAISADLQNEAQVNVRAAANARDELQAQLHARSAIELELFVLRFQSMLKGAIGNFLP-----IPLFELSGVLVSSDTMK----GLLDRDPDRGPEDGRTKG----------------------SYALNQPFGDFNGSFWIEEVVDENRKINLNSDGFGVGCQNFKHLLLAAVFDDPKYDVLFENIGDSRDPVRNRLEIIANISDWVDANDT 630
            S ++GVALIMV+ + T+L  IS + Q E++V ++  AN RD  +A   A+S +E    +L  QS +   I  +       I L+++  + + SD  +    G+          +G   G                      S+A  + FG+F G F  E V+DE  KIN+N         N     L ++F    Y+ +FEN  D      +R EII+ I DW+D ++T
Sbjct:   13 SGRKGVALIMVLTVVTILTVISVEFQYESRVYLQTVANFRDRQRAYYLAKSGVEFTRLILYLQSTVDRLIRQYWKNNPPNIQLWQM--IPIDSDLARAVAGGMFSAQDQESLFEGTVAGQGLKEDEEESVAEKNMQQMQTVSFAQGEGFGEFEGHFHAE-VIDEESKINVNIRPNNYKEVNTMKATLESLFTPEMYNPVFEN-PDKDGQYHDRQEIISAIIDWIDPDNT 237          
BLAST of mRNA_L-digitata_M_contig101140.2.1 vs. uniprot
Match: A0A1L6MWW0_9DELT (Uncharacterized protein n=2 Tax=Pajaroellobacter abortibovis TaxID=1882918 RepID=A0A1L6MWW0_9DELT)

HSP 1 Score: 69.3 bits (168), Expect = 3.330e-10
Identity = 67/212 (31.60%), Postives = 101/212 (47.64%), Query Frame = 1
Query:   40 PQRGVALIMVMVITTLLAAISADLQNEAQVNVRAAANARDELQAQLHARSAIELELFVLRFQSMLKGAIGNFL--------PIPLFELSGVLVSSDTMKGLLDRDPDRGPEDGRTKG---SYALNQPFGDFNGSFWIEEVVDENRKINLNSDGFGVGCQN-FKHLLLA----AVFDDPKYDVLFENIGDSRDPVRNRLEIIANISDWVDAND 627
            P RGVAL+MV+ + ++L  +  ++Q+E    +  A   RD +QA+  ARSAI L   ++  +  ++ ++             IP++E +      D + G+   D   G    R  G   S   N   G  NG F I  VVDE+R IN+NS     G  N   HL LA     +   P+Y+ LFE + D +  V +RL I   I DW D ++
Sbjct:    6 PNRGVALVMVLAMISVLTVMLTEIQDEVSTEMAGAMGDRDSVQAEYLARSAINLARLLVASEPTVRQSVAPLFLFLRQTPPQIPVWEFA------DYLLGMFS-DSQGGSSFTRVTGADLSSGKNLKLG--NGYFEIS-VVDEDRMINVNS-----GASNDIAHLRLARQLMGLMAPPQYNSLFEQV-DEQGEVHDRLRICQAIIDWADEDE 201          
BLAST of mRNA_L-digitata_M_contig101140.2.1 vs. uniprot
Match: A0A4Q3KZ57_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A4Q3KZ57_9DELT)

HSP 1 Score: 62.4 bits (150), Expect = 6.970e-8
Identity = 64/206 (31.07%), Postives = 94/206 (45.63%), Query Frame = 1
Query:   37 SPQRGVALIMVMVITTLLAAISADLQNEAQVNVRAAANARDELQAQLHARSAIELELFVLR----FQSMLKG---AIGNFLPIPLFELSGVLVSSDTMKGLLDRDPDRGPEDGRTKGSYALNQPFGDFNGSFWIEEVVDENRKI--NLNSDGFGVGCQNFKHLLLAAVFDDPKYDVLFENIGDSRDPVRNRLEIIAN-ISDWVDAN 624
            S QRGVAL+MV+ +  LL  + AD Q  +QV+VR A NARDELQA+ +A SA+ +   +L+     Q+++ G   A+G         +  +L       GLL     R        G+        DF     +     E+ KI  NL ++G   G Q     +L     DP+    FE   D         +I+ N ++DWVDA+
Sbjct:    1 SSQRGVALLMVLGLLALLGTVIADFQYSSQVDVRLAYNARDELQAEYNALSALRVRALILKQARKVQALVNGSMQAMGGASGAAAPPIGAILDMIPVECGLLSAITKRIDRSATGPGAQE------DFFPGECMATSESEHAKIAINLLANGLNQGAQTAVANMLRGTLFDPRLRKHFEQ-DDLMGQHAETPDILVNALADWVDAD 199          
BLAST of mRNA_L-digitata_M_contig101140.2.1 vs. uniprot
Match: A0A7Y5GZ59_9DELT (General secretion pathway protein GspK n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y5GZ59_9DELT)

HSP 1 Score: 56.6 bits (135), Expect = 6.810e-6
Identity = 31/78 (39.74%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   37 SPQRGVALIMVMVITTLLAAISADLQNEAQVNVRAAANARDELQAQLHARSAIELELFVLRFQSMLK---GAIGNFLP 261
            S  RGVAL+MV+++ +L+AA S +     +VN++ A+N   E+QA  HARS++EL   V+R Q+++    G +  F P
Sbjct:   29 SKPRGVALLMVLIMVSLMAAFSTEFSYNTRVNLKMASNLEREVQAYYHARSSVELARMVIRGQALVDQMLGLVAQFAP 106          
BLAST of mRNA_L-digitata_M_contig101140.2.1 vs. uniprot
Match: D6PCC5_9BACT (Putative general secretory pathway protein K n=1 Tax=uncultured marine bacterium MedDCM-OCT-S01-C143 TaxID=743046 RepID=D6PCC5_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 5.320e-5
Identity = 54/203 (26.60%), Postives = 95/203 (46.80%), Query Frame = 1
Query:   64 MVMVITTLLAAISADLQNEAQVNVRAAANARDELQAQLHARSAIELELFVLRFQSMLKGAIGNFLPIPLFELSGVLVSSDTMK------GLLDRDPDRGPEDGRTKGSYALNQPFGD--------FNGSFWIEEVVDENRKINLNSDGFGVGCQNFKHL--LLAAVFDDPKYDVLFENIGDSRDPVRNRLEIIANISDWVDAN 624
            MV++I  ++ A+ +D Q  + V+   A NARDE+QA+ +A SA+ +   +LR  + LKG +     I   +++ +L     M+      G+L     +G  DG ++ S+  +   G+          G   +     E+ KI++N        +  K L  +L A+  DPK +  F+    + +   +  E+I  I DWVD N
Sbjct:    1 MVLLIIFMVTAVVSDFQYNSNVDFELAINARDEVQAEYNALSALRVRAMILRQSNKLKGGLDQLQKIAGMDMNAMLPIGKMMEMIPVECGILSSFLSKGG-DGFSEESFDDDPASGEVLSDEEPPLQGEC-LATAESEHSKISINMLR-RQSNRTSKELTAMLLAMLSDPKLERHFQEDDRNGNHAESPEELIGAIQDWVDGN 200          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101140.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3A4JJH7_9DELT4.280e-1228.82Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A1L6MWW0_9DELT3.330e-1031.60Uncharacterized protein n=2 Tax=Pajaroellobacter a... [more]
A0A4Q3KZ57_9DELT6.970e-831.07Uncharacterized protein (Fragment) n=1 Tax=Deltapr... [more]
A0A7Y5GZ59_9DELT6.810e-639.74General secretion pathway protein GspK n=1 Tax=Myx... [more]
D6PCC5_9BACT5.320e-526.60Putative general secretory pathway protein K n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101140contigL-digitata_M_contig101140:278..925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog404589.Anae109_0723
Preferred namegspK
PFAMsT2SSK
Model size648
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K02460
KEGG TC3.A.15
KEGG Pathwayko03070,ko05111,map03070,map05111
KEGG ModuleM00331
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.61e-11
EggNOG OGsCOG3156@1|root,COG3156@2|Bacteria,1RIW9@1224|Proteobacteria,42V6H@68525|delta/epsilon subdivisions,2X2BW@28221|Deltaproteobacteria,2YVV7@29|Myxococcales
DescriptionType II secretion system (T2SS), protein K
Cds size648
COG categoryU
BRITEko00000,ko00001,ko00002,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406614.6202805-CDS-L-digitata_M_contig101140:277..9251682406614.6202805-CDS-L-digitata_M_contig101140:277..925Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101140 278..925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101140.2.1prot_L-digitata_M_contig101140.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101140 278..925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101140.2.1

>prot_L-digitata_M_contig101140.2.1 ID=prot_L-digitata_M_contig101140.2.1|Name=mRNA_L-digitata_M_contig101140.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=216bp
MARRRRRRRNGHSPQRGVALIMVMVITTLLAAISADLQNEAQVNVRAAAN
ARDELQAQLHARSAIELELFVLRFQSMLKGAIGNFLPIPLFELSGVLVSS
DTMKGLLDRDPDRGPEDGRTKGSYALNQPFGDFNGSFWIEEVVDENRKIN
LNSDGFGVGCQNFKHLLLAAVFDDPKYDVLFENIGDSRDPVRNRLEIIAN
ISDWVDANDTVDTVCM
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mRNA from alignment at L-digitata_M_contig101140:278..925+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101140.2.1 ID=mRNA_L-digitata_M_contig101140.2.1|Name=mRNA_L-digitata_M_contig101140.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=648bp|location=Sequence derived from alignment at L-digitata_M_contig101140:278..925+ (Laminaria digitata LdigPH10_18mv male)
ATGGCAAGGCGGAGGCGACGACGACGCAATGGCCACAGCCCGCAGAGGGG TGTGGCCTTGATCATGGTCATGGTCATCACGACCCTTTTGGCCGCGATCT CCGCAGACCTTCAAAATGAGGCTCAGGTGAATGTTCGTGCCGCGGCCAAC GCCCGCGACGAGCTGCAAGCGCAATTGCATGCGCGCAGCGCCATCGAGTT GGAGCTGTTCGTGCTGCGCTTTCAAAGCATGCTCAAGGGCGCCATCGGTA ACTTCCTGCCTATCCCCCTGTTCGAACTCTCTGGGGTCCTGGTCAGCTCG GATACTATGAAGGGCCTGCTGGACCGCGACCCCGACCGCGGCCCCGAGGA CGGCCGCACCAAGGGCAGCTACGCGCTCAATCAACCCTTTGGCGACTTCA ACGGCTCCTTCTGGATTGAGGAGGTGGTCGACGAGAACCGCAAGATCAAC CTCAACAGCGATGGCTTTGGGGTCGGCTGCCAAAACTTCAAGCACCTGCT GCTGGCTGCGGTCTTCGACGACCCTAAGTACGATGTGCTGTTCGAGAACA TTGGCGACTCGCGGGACCCGGTGCGCAATCGGCTGGAGATCATCGCCAAC ATCTCCGACTGGGTGGACGCCAACGACACGGTGGACACCGTGTGCATG
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Coding sequence (CDS) from alignment at L-digitata_M_contig101140:278..925+

>mRNA_L-digitata_M_contig101140.2.1 ID=mRNA_L-digitata_M_contig101140.2.1|Name=mRNA_L-digitata_M_contig101140.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=648bp|location=Sequence derived from alignment at L-digitata_M_contig101140:278..925+ (Laminaria digitata LdigPH10_18mv male)
ATGGCAAGGCGGAGGCGACGACGACGCAATGGCCACAGCCCGCAGAGGGG
TGTGGCCTTGATCATGGTCATGGTCATCACGACCCTTTTGGCCGCGATCT
CCGCAGACCTTCAAAATGAGGCTCAGGTGAATGTTCGTGCCGCGGCCAAC
GCCCGCGACGAGCTGCAAGCGCAATTGCATGCGCGCAGCGCCATCGAGTT
GGAGCTGTTCGTGCTGCGCTTTCAAAGCATGCTCAAGGGCGCCATCGGTA
ACTTCCTGCCTATCCCCCTGTTCGAACTCTCTGGGGTCCTGGTCAGCTCG
GATACTATGAAGGGCCTGCTGGACCGCGACCCCGACCGCGGCCCCGAGGA
CGGCCGCACCAAGGGCAGCTACGCGCTCAATCAACCCTTTGGCGACTTCA
ACGGCTCCTTCTGGATTGAGGAGGTGGTCGACGAGAACCGCAAGATCAAC
CTCAACAGCGATGGCTTTGGGGTCGGCTGCCAAAACTTCAAGCACCTGCT
GCTGGCTGCGGTCTTCGACGACCCTAAGTACGATGTGCTGTTCGAGAACA
TTGGCGACTCGCGGGACCCGGTGCGCAATCGGCTGGAGATCATCGCCAAC
ATCTCCGACTGGGTGGACGCCAACGACACGGTGGACACCGTGTGCATG
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