mRNA_L-digitata_M_contig101140.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig101140.2.1 vs. uniprot
Match: A0A3A4JJH7_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A3A4JJH7_9DELT) HSP 1 Score: 74.7 bits (182), Expect = 4.280e-12 Identity = 66/229 (28.82%), Postives = 104/229 (45.41%), Query Frame = 1
Query: 37 SPQRGVALIMVMVITTLLAAISADLQNEAQVNVRAAANARDELQAQLHARSAIELELFVLRFQSMLKGAIGNFLP-----IPLFELSGVLVSSDTMK----GLLDRDPDRGPEDGRTKG----------------------SYALNQPFGDFNGSFWIEEVVDENRKINLNSDGFGVGCQNFKHLLLAAVFDDPKYDVLFENIGDSRDPVRNRLEIIANISDWVDANDT 630
S ++GVALIMV+ + T+L IS + Q E++V ++ AN RD +A A+S +E +L QS + I + I L+++ + + SD + G+ +G G S+A + FG+F G F E V+DE KIN+N N L ++F Y+ +FEN D +R EII+ I DW+D ++T
Sbjct: 13 SGRKGVALIMVLTVVTILTVISVEFQYESRVYLQTVANFRDRQRAYYLAKSGVEFTRLILYLQSTVDRLIRQYWKNNPPNIQLWQM--IPIDSDLARAVAGGMFSAQDQESLFEGTVAGQGLKEDEEESVAEKNMQQMQTVSFAQGEGFGEFEGHFHAE-VIDEESKINVNIRPNNYKEVNTMKATLESLFTPEMYNPVFEN-PDKDGQYHDRQEIISAIIDWIDPDNT 237
BLAST of mRNA_L-digitata_M_contig101140.2.1 vs. uniprot
Match: A0A1L6MWW0_9DELT (Uncharacterized protein n=2 Tax=Pajaroellobacter abortibovis TaxID=1882918 RepID=A0A1L6MWW0_9DELT) HSP 1 Score: 69.3 bits (168), Expect = 3.330e-10 Identity = 67/212 (31.60%), Postives = 101/212 (47.64%), Query Frame = 1
Query: 40 PQRGVALIMVMVITTLLAAISADLQNEAQVNVRAAANARDELQAQLHARSAIELELFVLRFQSMLKGAIGNFL--------PIPLFELSGVLVSSDTMKGLLDRDPDRGPEDGRTKG---SYALNQPFGDFNGSFWIEEVVDENRKINLNSDGFGVGCQN-FKHLLLA----AVFDDPKYDVLFENIGDSRDPVRNRLEIIANISDWVDAND 627
P RGVAL+MV+ + ++L + ++Q+E + A RD +QA+ ARSAI L ++ + ++ ++ IP++E + D + G+ D G R G S N G NG F I VVDE+R IN+NS G N HL LA + P+Y+ LFE + D + V +RL I I DW D ++
Sbjct: 6 PNRGVALVMVLAMISVLTVMLTEIQDEVSTEMAGAMGDRDSVQAEYLARSAINLARLLVASEPTVRQSVAPLFLFLRQTPPQIPVWEFA------DYLLGMFS-DSQGGSSFTRVTGADLSSGKNLKLG--NGYFEIS-VVDEDRMINVNS-----GASNDIAHLRLARQLMGLMAPPQYNSLFEQV-DEQGEVHDRLRICQAIIDWADEDE 201
BLAST of mRNA_L-digitata_M_contig101140.2.1 vs. uniprot
Match: A0A4Q3KZ57_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A4Q3KZ57_9DELT) HSP 1 Score: 62.4 bits (150), Expect = 6.970e-8 Identity = 64/206 (31.07%), Postives = 94/206 (45.63%), Query Frame = 1
Query: 37 SPQRGVALIMVMVITTLLAAISADLQNEAQVNVRAAANARDELQAQLHARSAIELELFVLR----FQSMLKG---AIGNFLPIPLFELSGVLVSSDTMKGLLDRDPDRGPEDGRTKGSYALNQPFGDFNGSFWIEEVVDENRKI--NLNSDGFGVGCQNFKHLLLAAVFDDPKYDVLFENIGDSRDPVRNRLEIIAN-ISDWVDAN 624
S QRGVAL+MV+ + LL + AD Q +QV+VR A NARDELQA+ +A SA+ + +L+ Q+++ G A+G + +L GLL R G+ DF + E+ KI NL ++G G Q +L DP+ FE D +I+ N ++DWVDA+
Sbjct: 1 SSQRGVALLMVLGLLALLGTVIADFQYSSQVDVRLAYNARDELQAEYNALSALRVRALILKQARKVQALVNGSMQAMGGASGAAAPPIGAILDMIPVECGLLSAITKRIDRSATGPGAQE------DFFPGECMATSESEHAKIAINLLANGLNQGAQTAVANMLRGTLFDPRLRKHFEQ-DDLMGQHAETPDILVNALADWVDAD 199
BLAST of mRNA_L-digitata_M_contig101140.2.1 vs. uniprot
Match: A0A7Y5GZ59_9DELT (General secretion pathway protein GspK n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y5GZ59_9DELT) HSP 1 Score: 56.6 bits (135), Expect = 6.810e-6 Identity = 31/78 (39.74%), Postives = 50/78 (64.10%), Query Frame = 1
Query: 37 SPQRGVALIMVMVITTLLAAISADLQNEAQVNVRAAANARDELQAQLHARSAIELELFVLRFQSMLK---GAIGNFLP 261
S RGVAL+MV+++ +L+AA S + +VN++ A+N E+QA HARS++EL V+R Q+++ G + F P
Sbjct: 29 SKPRGVALLMVLIMVSLMAAFSTEFSYNTRVNLKMASNLEREVQAYYHARSSVELARMVIRGQALVDQMLGLVAQFAP 106
BLAST of mRNA_L-digitata_M_contig101140.2.1 vs. uniprot
Match: D6PCC5_9BACT (Putative general secretory pathway protein K n=1 Tax=uncultured marine bacterium MedDCM-OCT-S01-C143 TaxID=743046 RepID=D6PCC5_9BACT) HSP 1 Score: 53.9 bits (128), Expect = 5.320e-5 Identity = 54/203 (26.60%), Postives = 95/203 (46.80%), Query Frame = 1
Query: 64 MVMVITTLLAAISADLQNEAQVNVRAAANARDELQAQLHARSAIELELFVLRFQSMLKGAIGNFLPIPLFELSGVLVSSDTMK------GLLDRDPDRGPEDGRTKGSYALNQPFGD--------FNGSFWIEEVVDENRKINLNSDGFGVGCQNFKHL--LLAAVFDDPKYDVLFENIGDSRDPVRNRLEIIANISDWVDAN 624
MV++I ++ A+ +D Q + V+ A NARDE+QA+ +A SA+ + +LR + LKG + I +++ +L M+ G+L +G DG ++ S+ + G+ G + E+ KI++N + K L +L A+ DPK + F+ + + + E+I I DWVD N
Sbjct: 1 MVLLIIFMVTAVVSDFQYNSNVDFELAINARDEVQAEYNALSALRVRAMILRQSNKLKGGLDQLQKIAGMDMNAMLPIGKMMEMIPVECGILSSFLSKGG-DGFSEESFDDDPASGEVLSDEEPPLQGEC-LATAESEHSKISINMLR-RQSNRTSKELTAMLLAMLSDPKLERHFQEDDRNGNHAESPEELIGAIQDWVDGN 200 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101140.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig101140.2.1 >prot_L-digitata_M_contig101140.2.1 ID=prot_L-digitata_M_contig101140.2.1|Name=mRNA_L-digitata_M_contig101140.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=216bp MARRRRRRRNGHSPQRGVALIMVMVITTLLAAISADLQNEAQVNVRAAANback to top mRNA from alignment at L-digitata_M_contig101140:278..925+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig101140.2.1 ID=mRNA_L-digitata_M_contig101140.2.1|Name=mRNA_L-digitata_M_contig101140.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=648bp|location=Sequence derived from alignment at L-digitata_M_contig101140:278..925+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig101140:278..925+ >mRNA_L-digitata_M_contig101140.2.1 ID=mRNA_L-digitata_M_contig101140.2.1|Name=mRNA_L-digitata_M_contig101140.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=648bp|location=Sequence derived from alignment at L-digitata_M_contig101140:278..925+ (Laminaria digitata LdigPH10_18mv male)back to top |