mRNA_L-digitata_M_contig101134.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101134.1.1
Unique NamemRNA_L-digitata_M_contig101134.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101134.1.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 7.450e-15
Identity = 38/91 (41.76%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:    7 LHAKYHNNSKEARQACYEKLVNVRMEQGQDPDDYIFKLLEVRGRLHEMGEKISDERFEDILLQGLTDDYEFVKMTSFHSPNFGIDDIQSMM 279
            L   +  ++KEAR+AC  KL +  M+ G+DP D++ K+ ++R RL +MGEKI DE +ED+LL+ L+ +Y F++ TS     FG+ +I++ M
Sbjct:   67 LEDSFDGSTKEARRACRYKLFHTTMKSGEDPSDFLAKMDDLRLRLEDMGEKIPDESYEDVLLRALSKEYYFIRQTSHKDRTFGLTEIRTTM 157
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BLAST of mRNA_L-digitata_M_contig101134.1.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.420e-11
Identity = 31/68 (45.59%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:   79 MEQGQDPDDYIFKLLEVRGRLHEMGEKISDERFEDILLQGLTDDYEFVKMTSFHSPNFGIDDIQSMMR 282
            M QG+DPD +   + +VR R  +M E ISDERFED++LQ +++DY++V+ TSF   +FG+++I++ M+
Sbjct:    1 MAQGEDPDGFFITVEDVRQRPKDMVEIISDERFEDVILQAISNDYDYVRPTSFRVRHFGLEEIKTTMK 68
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BLAST of mRNA_L-digitata_M_contig101134.1.1 vs. uniprot
Match: A0A6H5K0G3_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G3_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 4.850e-11
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:   49 ACYEKLVNVRMEQGQDPDDYIFKLLEVRGRLHEMGEKISDERFEDILLQGLTDDYEFVKMTSFHSPNFGIDDIQSMMR 282
            A  E+L N  M  G+DPDDY  +   +R +L  MGE ISD RF+DI +QG++D+++ VK+  F  P F + D+QS MR
Sbjct:   72 AKMEELENNPMNPGEDPDDYCNQKHLLRTQLDTMGEPISDRRFKDICVQGISDEHKDVKLMVFRDPTFNVLDMQSTMR 149
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BLAST of mRNA_L-digitata_M_contig101134.1.1 vs. uniprot
Match: A0A6H5JKA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKA6_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 5.820e-10
Identity = 35/92 (38.04%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    7 LHAKYHNNSKEARQACYEKLVNVRMEQGQDPDDYIFKLLEVRGRLHEMGEKISDERFEDILLQGLTDDYEFVKMTSFHSPNFGIDDIQSMMR 282
            L A Y+  + E  +A  + L    ME G++PDD+  K   +R +L +MGE ISD RF+DI +QGL++D + +K+  F  P+F +  +Q+ +R
Sbjct:  120 LKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGLSEDCKDIKLMVFLDPSFDVQQMQATVR 211
[Close]
BLAST of mRNA_L-digitata_M_contig101134.1.1 vs. uniprot
Match: A0A6H5K6P4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P4_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.160e-7
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:   49 ACYEKLVNVRMEQGQDPDDYIFKLLEVRGRLHEMGEKISDERFEDILLQGLTDDYEFVKMTSFHSPNFGIDDIQSMMR 282
            A  ++L N  M  G +PDD   +   +R +L +MG  ISD RF+DI ++G++D+Y+ VK+  F  P F + D++S MR
Sbjct:  142 AKMKELENNPMNPGDNPDDNFNQRHLLRAQLDKMGAPISDRRFKDICVRGVSDEYKDVKLMVFRDPTFNVLDMKSTMR 219
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101134.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE7.450e-1541.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWF9_9PHAE3.420e-1145.59Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K0G3_9PHAE4.850e-1146.15CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JKA6_9PHAE5.820e-1038.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6P4_9PHAE1.160e-739.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101134contigL-digitata_M_contig101134:553..834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size282
Hectar predicted targeting categoryother localisation
Exons1
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406614.5739765-CDS-L-digitata_M_contig101134:552..8341682406614.5739765-CDS-L-digitata_M_contig101134:552..834Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101134 553..834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101134.1.1prot_L-digitata_M_contig101134.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101134 553..834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101134.1.1

>prot_L-digitata_M_contig101134.1.1 ID=prot_L-digitata_M_contig101134.1.1|Name=mRNA_L-digitata_M_contig101134.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=94bp
NALHAKYHNNSKEARQACYEKLVNVRMEQGQDPDDYIFKLLEVRGRLHEM
GEKISDERFEDILLQGLTDDYEFVKMTSFHSPNFGIDDIQSMMR
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mRNA from alignment at L-digitata_M_contig101134:553..834+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101134.1.1 ID=mRNA_L-digitata_M_contig101134.1.1|Name=mRNA_L-digitata_M_contig101134.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=282bp|location=Sequence derived from alignment at L-digitata_M_contig101134:553..834+ (Laminaria digitata LdigPH10_18mv male)
AATGCTCTGCACGCCAAATACCACAACAACAGCAAGGAGGCACGGCAGGC
CTGCTACGAGAAGCTAGTGAACGTTCGGATGGAGCAAGGACAGGACCCTG
ACGACTACATCTTCAAGCTACTTGAGGTTCGAGGGCGACTTCATGAAATG
GGAGAGAAGATCTCGGACGAGAGGTTTGAAGACATCCTACTGCAGGGACT
CACCGACGACTACGAGTTCGTAAAAATGACGAGCTTCCACAGCCCGAACT
TCGGAATCGACGACATCCAATCGATGATGAGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig101134:553..834+

>mRNA_L-digitata_M_contig101134.1.1 ID=mRNA_L-digitata_M_contig101134.1.1|Name=mRNA_L-digitata_M_contig101134.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=282bp|location=Sequence derived from alignment at L-digitata_M_contig101134:553..834+ (Laminaria digitata LdigPH10_18mv male)
AATGCTCTGCACGCCAAATACCACAACAACAGCAAGGAGGCACGGCAGGC
CTGCTACGAGAAGCTAGTGAACGTTCGGATGGAGCAAGGACAGGACCCTG
ACGACTACATCTTCAAGCTACTTGAGGTTCGAGGGCGACTTCATGAAATG
GGAGAGAAGATCTCGGACGAGAGGTTTGAAGACATCCTACTGCAGGGACT
CACCGACGACTACGAGTTCGTAAAAATGACGAGCTTCCACAGCCCGAACT
TCGGAATCGACGACATCCAATCGATGATGAGA
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