mRNA_L-digitata_M_contig101129.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101129.1.1
Unique NamemRNA_L-digitata_M_contig101129.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101129.1.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 2.380e-17
Identity = 43/68 (63.24%), Postives = 53/68 (77.94%), Query Frame = 1
Query:   37 KLVYNNPLEMWRKRAKEFPYLARLARRVLSIPATLAQSERMFSAAGLTVNKRRGSLDPENVEMLVFLR 240
            K V+NNPL+ WRK+  E+P LA LARRVL+IP++ AQSER+FS AGLTV   R  L  ENVE+LV+LR
Sbjct:  477 KKVFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLR 544          
BLAST of mRNA_L-digitata_M_contig101129.1.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.160e-16
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 1
Query:   43 VYNNPLEMWRKRAKEFPYLARLARRVLSIPATLAQSERMFSAAGLTVNKRRGSLDPENVEMLVFLR 240
            V   PLE WR +A+E+P LA LARRVL IPA  AQSER+FS+AGL V K R  +DPENV ++VFLR
Sbjct:  476 VRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLR 541          
BLAST of mRNA_L-digitata_M_contig101129.1.1 vs. uniprot
Match: A0A7S3PTX0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PTX0_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.540e-16
Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 1
Query:   46 YNNPLEMWRKRAKEFPYLARLARRVLSIPATLAQSERMFSAAGLTVNKRRGSLDPENVEMLVFLRCN 246
            +N+PL+ W++  +E+P +  LA+R+LS+PAT A SER+FS A L   K+RGSL P+NV MLVFL+ N
Sbjct:   91 FNSPLQWWKQNHREYPNIWMLAKRILSVPATSAPSERVFSVASLIATKKRGSLKPDNVNMLVFLKEN 157          
BLAST of mRNA_L-digitata_M_contig101129.1.1 vs. uniprot
Match: A0A7S3PUA6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PUA6_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 5.740e-16
Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 1
Query:   46 YNNPLEMWRKRAKEFPYLARLARRVLSIPATLAQSERMFSAAGLTVNKRRGSLDPENVEMLVFLRCN 246
            +N+PL+ W++  +E+P +  LA+R+LS+PAT A SER+FS A L   K+RGSL P+NV MLVFL+ N
Sbjct:  158 FNSPLQWWKQNHREYPNIWMLAKRILSVPATSAPSERVFSVASLIATKKRGSLKPDNVNMLVFLKEN 224          
BLAST of mRNA_L-digitata_M_contig101129.1.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 7.980e-16
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 1
Query:   43 VYNNPLEMWRKRAKEFPYLARLARRVLSIPATLAQSERMFSAAGLTVNKRRGSLDPENVEMLVFLR 240
            VY +PL+ WR R  +FP+LA LARRVL+IPAT A+SER+FS AG  V K R +L P  VE+LV LR
Sbjct:  219 VYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLR 284          
BLAST of mRNA_L-digitata_M_contig101129.1.1 vs. uniprot
Match: A0A4U5UIN6_COLLU (Zinc finger BED domain-containing protein 1 n=1 Tax=Collichthys lucidus TaxID=240159 RepID=A0A4U5UIN6_COLLU)

HSP 1 Score: 78.6 bits (192), Expect = 1.500e-15
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 1
Query:   49 NNPLEMWRKRAKEFPYLARLARRVLSIPATLAQSERMFSAAGLTVNKRRGSLDPENVEMLVFLRCN 246
            +NPL  W+    ++P+LARLARR LSIP T  ++ER+FS AG+ VNK+R +LDP NV+ LVFL  N
Sbjct:  236 SNPLSWWKTSGTKYPHLARLARRYLSIPGTSVRAERVFSTAGMIVNKKRSALDPANVDRLVFLANN 301          
BLAST of mRNA_L-digitata_M_contig101129.1.1 vs. uniprot
Match: A0A6G0IE79_LARCR (Uncharacterized protein n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0IE79_LARCR)

HSP 1 Score: 78.6 bits (192), Expect = 3.350e-15
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 1
Query:   49 NNPLEMWRKRAKEFPYLARLARRVLSIPATLAQSERMFSAAGLTVNKRRGSLDPENVEMLVFLRCN 246
            +NPL  W+    ++P+LARLARR LSIP T  ++ER+FS AG+ VNK+R +LDP NV+ LVFL  N
Sbjct:  410 SNPLSWWKTSGTKYPHLARLARRYLSIPGTSVRAERVFSTAGMIVNKKRSALDPANVDRLVFLANN 475          
BLAST of mRNA_L-digitata_M_contig101129.1.1 vs. uniprot
Match: A0A6G0IJ18_LARCR (Uncharacterized protein n=5 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0IJ18_LARCR)

HSP 1 Score: 78.6 bits (192), Expect = 3.450e-15
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 1
Query:   49 NNPLEMWRKRAKEFPYLARLARRVLSIPATLAQSERMFSAAGLTVNKRRGSLDPENVEMLVFLRCN 246
            +NPL  W+    ++P+LARLARR LSIP T  ++ER+FS AG+ VNK+R +LDP NV+ LVFL  N
Sbjct:  452 SNPLSWWKTSGTKYPHLARLARRYLSIPGTSVRAERVFSTAGMIVNKKRSALDPANVDRLVFLANN 517          
BLAST of mRNA_L-digitata_M_contig101129.1.1 vs. uniprot
Match: A0A1A8M216_9TELE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothobranchius pienaari TaxID=704102 RepID=A0A1A8M216_9TELE)

HSP 1 Score: 73.9 bits (180), Expect = 6.790e-15
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   49 NNPLEMWRKRAKEFPYLARLARRVLSIPATLAQSERMFSAAGLTVNKRRGSLDPENVEMLVFLRCN 246
            ++PL  W+   + FP LA+LA  +L IPAT   SER+FSAAG  V+K+R SL PE+V+ML FL CN
Sbjct:   77 DDPLIWWKANEQRFPTLAKLANSLLCIPATSTPSERLFSAAGNIVSKKRASLSPEHVDMLTFLHCN 142          
BLAST of mRNA_L-digitata_M_contig101129.1.1 vs. uniprot
Match: UPI0019625210 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Perca fluviatilis TaxID=8168 RepID=UPI0019625210)

HSP 1 Score: 75.1 bits (183), Expect = 1.730e-14
Identity = 40/78 (51.28%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   13 ETNAKGETKLVYNNPLEMWRKRAKEFPYLARLARRVLSIPATLAQSERMFSAAGLTVNKRRGSLDPENVEMLVFLRCN 246
            +T  K     + +NPL+ WR     FP LARLA+R L IP T   SER+FSAAGL VN+ R  L PE+V+MLVF   N
Sbjct:  177 DTYVKDSRSSLESNPLDWWRANQTRFPRLARLAQRYLCIPGTSVPSERVFSAAGLVVNRLRTRLTPEHVDMLVFFNKN 254          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101129.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCS5_ECTSI2.380e-1763.24Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JHP9_9PHAE1.160e-1663.64Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A7S3PTX0_9STRA1.540e-1653.73Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3PUA6_9STRA5.740e-1653.73Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6H5JWI1_9PHAE7.980e-1660.61Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A4U5UIN6_COLLU1.500e-1556.06Zinc finger BED domain-containing protein 1 n=1 Ta... [more]
A0A6G0IE79_LARCR3.350e-1556.06Uncharacterized protein n=1 Tax=Larimichthys croce... [more]
A0A6G0IJ18_LARCR3.450e-1556.06Uncharacterized protein n=5 Tax=Larimichthys croce... [more]
A0A1A8M216_9TELE6.790e-1554.55Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
UPI00196252101.730e-1451.28E3 SUMO-protein ligase ZBED1-like n=1 Tax=Perca fl... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101129contigL-digitata_M_contig101129:551..796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G5Z0
PFAMsDUF659,Dimer_Tnp_hAT,zf-BED
Model size246
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.17e-19
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota
Descriptionprotein dimerization activity
Cds size246
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406614.5517354-CDS-L-digitata_M_contig101129:550..7961682406614.5517354-CDS-L-digitata_M_contig101129:550..796Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101129 551..796 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101129.1.1prot_L-digitata_M_contig101129.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101129 551..796 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101129.1.1

>prot_L-digitata_M_contig101129.1.1 ID=prot_L-digitata_M_contig101129.1.1|Name=mRNA_L-digitata_M_contig101129.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=82bp
MFRDETNAKGETKLVYNNPLEMWRKRAKEFPYLARLARRVLSIPATLAQS
ERMFSAAGLTVNKRRGSLDPENVEMLVFLRCN
back to top

mRNA from alignment at L-digitata_M_contig101129:551..796-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101129.1.1 ID=mRNA_L-digitata_M_contig101129.1.1|Name=mRNA_L-digitata_M_contig101129.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=246bp|location=Sequence derived from alignment at L-digitata_M_contig101129:551..796- (Laminaria digitata LdigPH10_18mv male)
ATGTTCAGAGACGAGACTAACGCCAAAGGGGAGACCAAGTTGGTTTACAA CAACCCGCTGGAGATGTGGCGCAAGAGGGCGAAGGAGTTCCCCTACCTCG CAAGGCTGGCACGCCGCGTGTTATCCATCCCCGCCACGCTGGCGCAGTCT GAACGCATGTTCTCAGCTGCGGGGCTGACTGTGAACAAGAGGCGTGGTTC GCTCGACCCGGAAAATGTGGAGATGCTGGTTTTCCTGCGATGCAAC
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig101129:551..796-

>mRNA_L-digitata_M_contig101129.1.1 ID=mRNA_L-digitata_M_contig101129.1.1|Name=mRNA_L-digitata_M_contig101129.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=246bp|location=Sequence derived from alignment at L-digitata_M_contig101129:551..796- (Laminaria digitata LdigPH10_18mv male)
ATGTTCAGAGACGAGACTAACGCCAAAGGGGAGACCAAGTTGGTTTACAA
CAACCCGCTGGAGATGTGGCGCAAGAGGGCGAAGGAGTTCCCCTACCTCG
CAAGGCTGGCACGCCGCGTGTTATCCATCCCCGCCACGCTGGCGCAGTCT
GAACGCATGTTCTCAGCTGCGGGGCTGACTGTGAACAAGAGGCGTGGTTC
GCTCGACCCGGAAAATGTGGAGATGCTGGTTTTCCTGCGATGCAAC
back to top